XLOC_024609 (gene) - C. hemisphaerica

Overview
NameXLOC_024609
Unique NameXLOC_024609
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002439:9034..19118-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_024609 ID=XLOC_024609|Name=XLOC_024609|organism=Clytia hemisphaerica|type=gene|length=10085bp|location=Sequence derived from alignment at sc0002439:9034..19118- (Clytia hemisphaerica)
TTTAAAGTACCTTGTAGGCTCGCAAATAGAAAATTAAGAACGTAGACAAT
TCACTCTTTAATTTTTCATTTCCATCTCGTTTTCTCTGATTTCAGTCTGT
ATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGTAAGTTAT
TTTTGCTGTTCTCAACAAGTGAAATGAACTGTCTCCAACGTTTTTACCTC
AATTTTAACATTGTCAATAATTTTGAACTTCTAAATATCGAGGGTACTGT
AGTATTATTAATCACTGTTTGATTTTTCAACAGAATCTATCAGATTTCTC
TATACCAGCAGATACCAGCACTGTGTAACCAAATTCTAACCTTTTCTTCG
TCTTATTTGTGCTTTCAAGGAAGCGTTGAAAGAGTTACGGCAAAAGACGG
CAGGTTATATGCGAACGAATGAAGATGACTTTCTTCCTTTCACCTCCAAC
ACGAATACCGGTGACATGCTTAGCACTGGTGAGTTTTCAATGGTTGTTGA
CTGTTAGAAAGTTTTTTGAAATTACTGACCTATCAAAGGTTCCTATACCA
ATAAAATATTTTGAAGAATCAAACTGGTTCTTATTTTTGGACCTACCTCN
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ATTTTCTGACTGATTTTTTTCATTTTTCTTTTCGCATTGCTATCTAACTT
TAATCATCAGGTAGGTCCATTCAGCATATTGCTTGTTATATTTAAAGCTT
TTAAAAAGGAAACGGTGAAAATCACGATTAAAAGCTTTCGCAACGCTCTC
TTTTCGGTACTCCTAAAATAGAGTGCACCGCCAGAAACGACGGCCGATTT
CAAACCACTATGAATCTTTTTCGACACTTTGAATAATTTTGTTTTTGTTA
CAGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTACCACGTGG
GGTGGTCAACTAGAGGTATGTTATTTCATTGTAAAGCTCATATCCGGGGG
GAGGGGGGCTACTCGATTTCGAAATGACGGTATGTGCTTTTCAAAATCTG
CTTTTCAAAATCTGCTTTTCAAAATCGTACCCTTACAGTGCAGTTCAATA
TGGCTGAACAGGTACCCTTTCAGTGCATTTTCTCATGATTTACCCAACCC
TTATAGTGCACTATATTTTTCAGTTGTAAATCTGCATGAAAAAAGAAGCT
TGGGAAATTTTCTGTTTCAAAGAAAAACTCAGAAAATTATTTTTGTCAGC
TGTAATTATCAGACAATAGAAACTTTTTCAAACAAACGAGAAGTAAAAAC
CTTTATTTTTATCAGTTATTTTGAATTTGTTTTAATTCGACTCTTGCAGT
GCTATCTGACAGAAACACACCCTTACAGTGCATTTTGGGATGCTGAAAAA
CCCGGTACATGACGTAAGCCAGATCATATGAGTGCCCCCCTCCCCCTGGG
GCTCATATATCTGAGGTTTCGCTGTTATCTTTTTACTGCTGGCCAGAGTA
ACTGACATTGCTTCTCAAAGAATCAGTATATTACTGCTAGTATGAAAAGC
TCGAAAAGGTTTCGAAAAAGAAATGTCCTCCTCTTTACAGATTCGTGCGA
TATCGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGCCAACGCTCCC
AGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTTCGATTATC
GTAAGTTGCCTTTTTGATGTAAACTCTGATTTTAATTATCGCCAAAAACC
AAAGACCCCACACTGATAAAGTTTATAAAGCCTCTGACATTGCAATTTAA
TCTTTGACCTAGAAAGCCTTATGCTTAATATCTGGAATATGCTCAGTCAG
AGGCGTAACCACGGGTTTTCGTTTCGGGGGATGAGATTGGAAAATTTTTG
ACCTTTTTAGGGGGAATTTTTGGAGAAGATTTTTCTCGTAACTTATGCTC
CGCGGGCGTCAATTGCTGCTCTAAGAAATCTCAAGTTGCTTGAAAAAGAG
GCATCTGAAGGTCAATGTTAGCGAGAGTAAGATCACAAAAAGTGCGGAAA
AACTTAAAATTTCATGTCGCAGAGAGTTTTCTTTGTAATCTTGGCGCCGC
AGGCAAAAAGAAAATAGCTAACCAGGCGGACCACAGGGAGGCTTTTATTT
AAGATTTGGAATCCTAAAAGTGAAAATAACGCCATAGTAACAGCAAAAAA
GAAAAAAAAGCTGGAATTTGTCCACTGTTTGCTATTTATAGTAACAGAAA
TTCTGTTTTTTTTCTTTGGTTGTTTCCAATAAGAAGAATGACGTAATCTT
AACTTGTGCGAAATTCTCTCTTTCACCTTTGCAGGCAACTTGAATGAATG
CAACTTGAAATACATAATTTATTATCGCTATTTATAGAAATTTTCGTAGA
ATTGACAGTTAGTGTGACAGATGCGATGTCGTTTGTTTTTGTCAATAATT
TATATACCCCTTACCTGTTGTTATCTCCTGTCCATTTTTAAGTTCCAGAA
AACTAATACAATTTTTTAAATCGCAACCATCCTCGTATGAGTAAAAATAA
TATTTAATATAGTACCATGAATGACATTTCTATGAATTTTATCGATATAG
AAAATTTAACTTAACTGGATTAACTGGATTTATGAATTTCGATGTCACAT
CAGAAAATGTTAATCAAATTTCAAACACTTTGTCTTGATAACACGAAGTA
GAAGCATTGTGTAAAGATAATATCGATGCAATGGCTTTTCTCAGTGTTGT
TGTTTTGACCTTATCGTTATTACTAAAGTTCGCTTCTACAACGGTGTTAG
ATACTCTATCGAACACTGTCAACAAAGGTGCAACTCTGGCTGGAGAAAAC
ATCGAATCTTTACTACCCGATGCCGAAGTTGCTTTAGCTGGATCCATCAT
TAATTACAGTAAATGGTCTCTCATCGAACGTGAATGGGAAATAGAATACG
GAGATGTTGATATCCCTGCAGAGACTGTACACCCTGGGTACGAGGAAGCT
TTTGTTACGGAAAAAGATTCGGCTTTCTTCAAGCTTCATCATGGTGTTTC
TGGCAAACTGTCATGGGAGGTCAAAACCTTTAATGAATCATACATAATTC
ATTTTATGTATGATATCCCCTATGATTTGGGGTTCAAGGAGCATAACCAA
CTGGCTATTGCTCTCTGCTCATCAAACGACAGCCTTTGCCGGGAACTTTC
CCGATCGGATTTGAAATCGAAGACGTACTCTTTCTCCAAACGTCGGCTTT
ACAGATATACCATCGAAGATGTGTCTGTTTGTAACCAGGATTTATGCGTC
TTCGCTAAGATGGGTACTGGACACAAAGCCACAGCCAAAATCAGAGTCTT
CCCAACGCGAGAAGAAGATGCCGCTACGAAAATAAAGGAAAAATTGCAAC
ATGATTCCTTTGGAAATCAAGAATATGATAATTTTTTGGAAGACGAAAAA
GATTCGTCCAACCGAACCTCCAGAGCTGCTTTTCTCCAATTATATTCATT
CTTCACGATTGTTGTTGTCACCCTCGCATATGTTGGGCTGGTGTAACTTG
ACGATCTTATCGGATGTTATTTCTAACCTGAAGAACCTTTTTTTTAAATT
TAGCAGACACAAACTTGAACAGTGAAAAATGGCACTTTGAAAAACCTTTG
TGACTGATTGAAAACTAGCCATTACAACAGCATAATGAAAAATATACAGT
CAAGCTTGGAAAACAATCTTAAGTTTTTTTTAATTTCTGTTATTATGATT
TTATTACCACCTTTTTTGAATTTTATTTTCCGAAGTATCGCGCACATTTT
TTTCTATATCAAAATTTTGTTCTTTTTTCTACGGTATTTATTGATGGGAG
TTGCTGATGATTCTTGGTGATTCTGGTTTTAGGTGTAATAGACAGACCCT
ATGAAAGACCCTTCATTCTTGAATATAATATAAATATTTTATGAAGACTA
GAAACCCTTGAAAATATATTCCAAGAACCCTGTTAACCATTGACACCCTT
GCTATATAGGGCTCTTTGTATAAAAGTTAATATTTGTGTCACATTTTATT
TTGTGTCTATTTTACGTGATTTTCAATGAAATATTTACGATATTTTAAGA
AATGTTTGTTTCAAATTTTATTCAAAAAAGATAAATTTCCATTTTCATTC
CACGTACAAACAACCGATTGAATTTTTATAAAAATAAGGTTTACTGAAAT
ATATCGCCTGGCAACTAAACTGACTTGAAAGAAATATTGATTGGTTTAGT
CCCTTTTTCATTTAGTATTCAACTCGAGTATTTTTCAAAAATTAATTGAT
TGATCGAAGTTTCTTTGACTCGTCATTTTCGATGTTTTTTGTAAAAGAAA
CCTCTTTACAATGAAGTTGGCACTGAAAATTGCGTTTTGTTTTACCATTT
TCTGCCTAAGTTTCACCTTTTCGCATGTTTTCCAATTAAAACAGTGCAAT
AATTTTGATGCAGAATTTTCCAAAGTCACTTATGGTCAACGGCTTTTAGG
TGAAATTCTCTTGACTTTGAGTTCACTTTCATTGCGTGGCTGTCTCACTG
AATGTATGTACCATCTTGGATGTCTATCCGTTAATTACATGAGAGAAGAT
TCTACTTGTGAAATCTTGGGGAACATAATCCAAAGAAACATTGAACAACA
CGTGACCGTCTTAACCAATCAGACGGGTTGGAATCATTTCGAAACAAATT
ATGACCGAAAAGCTGTAAGTTATCAATATCATTCATTCACTTTTGAACTT
TTAGTGGTCCGAATTTCAAAATTTGAGCTTTCAAAAGCCTCCATTTGAGC
TTTCAAGAGCCTCCATTTGAGCGGTGTACTAAAGTCTTTTGTTGGACCTG
AATCGAGGTTTTGCAGTTGACTTTTCGTAGCTTAAACATCATTATATAAA
CTCTTTATTCTATTTTGTTTTTTAGATTGGAATCACTTGTTCCCGAAGTA
ATCCATGCCCATCGGATAAACGTTGTGTTGATAATTGTGATGGCTTGGCT
TCTTGCGTCCCTCTTACAGTCGGTAAGACATCGGAGTATCCAATAAGCGA
CCATTCTGAAAACTAATCTTCCTTCCTTCTCTTCACTATTTAGGCGCCAT
TGCTTTTTTGGACCTACCTCGGAGGTCCTTTAAATTAATGTTCGTCCGTC
CGTCCGTCCGTCCGTTCGTTCGTTCGTCTGTTACCAGTTTTTCTCGGGAT
TGGCTCATTACTTTATTCTGTTTTTTGGCGCAATGATGCAAAATGATGAT
TCCTAAAAAGTGAGGGAGCCCGATTTTCGAAAAAAATTTTCCGGTCGTAT
GCCGGAAAACTGTNTTTTTGTAAAAGAAACCTCTTTACAATGAAGTTGGC
ACTGAAAATTGCGTTTTGTTTTACCATTTTCTGCCTAAGTTTCACCTTTT
CGCATGTTTTCCAATTAAAACAGTGCAATAATTTTGATGCAGAATTTTCC
AAAGTCACTTATGGTCAACGGCTTTTAGGTGAAATTCTCTTGACTTTGAG
TTCACTCTCATTGCGTGGCTGTCTCACTGAATGTATGTACCATCTTGGAT
GTCTATCCGTTAATTACATGAGAGAGGATTCTACTTGTGAAATCTTGGGG
AACATAATCCAAAGAAACATTGAACAACACGTGACCGTCTTAACCAATCA
GACGGGTTGGAATCATTTCGAAACAAATTATGACCGAAAAGCTGTAAGTT
ATCAATATCATTCATTCACTTTTGAACTTTTAGTGGTCCGAATTTCAAAA
TTTGAGCTTTCAAAAGCCTCCATTTGAGCTTTCAAGAGCCTCCATTTGAG
CGGTGTACTAAAGTCTTTTGTTGGACCTGAATCGAGGTTTTGCAGTTGAC
TTTTCGTAGCTTAAACATCATTATATAAACTCTTTATTCTATTTTGTTTT
TTAGATTGGAATCACTTGTTCCCGAAGTAATCCATGCCCATCGGATAAAC
GTTGTGTTGATAATTGTGATGGCTTGGCTTCTTGCGTCCCTCTTACAGTC
GGTAAGACATCGGAGTATCCAATAAGCGACCATTCTGAAAACTAATCTTC
CTTCCTTCTCTTCACTATTTAGGCGCCATTGCTTTTTTGGACCTACCTCG
GAGGTCCTTTAAATTAATGTTCGTCCGTCCGTCCGTNNNNNNNNNNNNNN
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GGGGGGGGGGCATTCTAACAAAGGGTACTGGTAATTTTTGTTCGATTTAA
GGGGGGAGTTTTCTTTAAGGGCAAAGTAACATTTTTTAAGGGGGGAGACT
GAAAAGGTAGGCAAAAACCATGCAGGTAGGCAAAAACCATGCAGCTTTTG
ATATAGGGCCTGTCCTAGAAGTCTCTAAGTGTTCCCACAAGAAGTAATCT
TTCGGTTTCCCTTGTAAAAAAATAACGTCATACACAAAAAGTCACAAATT
TTCCTTCGCTTTCCAAAAGTGAAGAAATGAACAGTTTTGTGGTGAAGATA
TAACGAGAGAACGTTTTCAAATACTGTGTTCTGTCAATTTTGCTCATTTC
TGTCTATTTAGGCGGAATTCAACAATCGTGTGTTC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00040477TCONS_00040477Clytia hemisphaericatranscript
TCONS_00040476TCONS_00040476Clytia hemisphaericatranscript
TCONS_00040475TCONS_00040475Clytia hemisphaericatranscript
TCONS_00040474TCONS_00040474Clytia hemisphaericatranscript
TCONS_00040473TCONS_00040473Clytia hemisphaericatranscript
TCONS_00040472TCONS_00040472Clytia hemisphaericatranscript
TCONS_00040471TCONS_00040471Clytia hemisphaericatranscript
TCONS_00040470TCONS_00040470Clytia hemisphaericatranscript
TCONS_00040469TCONS_00040469Clytia hemisphaericatranscript
TCONS_00040468TCONS_00040468Clytia hemisphaericatranscript
TCONS_00040467TCONS_00040467Clytia hemisphaericatranscript
TCONS_00040466TCONS_00040466Clytia hemisphaericatranscript
TCONS_00040465TCONS_00040465Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00040465-proteinTCONS_00040465-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002439supercontigsc0002439:9034..19118 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
54.31	52.97	41.34	38.66	52.37	40.3	39.8	48.26	45.57	43.4	27.38	25.86	22.18	19.61	18.52	19.43	39.68	35.83	19.39	24.18	33.7	35.37	44.1	51.35	52.14	70.07	60.73	77.84	23.21	22.73