TCONS_00040476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040476
Unique NameTCONS_00040476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040476 ID=TCONS_00040476|Name=TCONS_00040476|organism=Clytia hemisphaerica|type=transcript|length=654bp
AGGCTCGCAAATAGAAAATTAAGAACGTAGACAATTCActctttaatttt
tcatttccatCTCGTTTTCTCTGATTTCAGTCTGTATAATTCGGTTATCG
TTCAAAAGTTTGGTTCATCCACCAAAGAAGCGTTGAAAGAGTTACGGCAA
AAGACGGCAGGTTATATGCGAACGAATGAAGATGACTTTCTTCCTTTCAC
CTCCAACACGAATACCGGTGACATGCTTAGCACTGAGGAGTATGGGAAGT
ACTGTGATGACATAGAGAATACTACCACGTGGGGTGGTCAACTAGAGATT
CGTGCGATATCGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGCCAA
CGCTCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTTC
GATTATCGCAACTTGAATGAATGCAACTTGAAATACATAATTTATTATCG
CTATTTATAGAAATTTTCGTAGAATTGACAGTTAGTGTGACAGATGCGAT
GTCGTttgtttttgtcaataatttatATACCCCTTACCTGTTGTTATCTC
CTGTCCATTTTTAAGTTCCAGAAAACtaatacaattttttaaatcgcaAC
CATCCTCGTATGagtaaaaataatatttaataTAGTACCATGAATGACAT
TTCT
Run BLAST on NCBI

transcript from alignment at sc0002439:14488..19103-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040476 ID=TCONS_00040476|Name=TCONS_00040476|organism=Clytia hemisphaerica|type=transcript|length=4616bp|location=Sequence derived from alignment at sc0002439:14488..19103- (Clytia hemisphaerica)
AGGCTCGCAAATAGAAAATTAAGAACGTAGACAATTCACTCTTTAATTTT
TCATTTCCATCTCGTTTTCTCTGATTTCAGTCTGTATAATTCGGTTATCG
TTCAAAAGTTTGGTTCATCCACCAAAGTAAGTTATTTTTGCTGTTCTCAA
CAAGTGAAATGAACTGTCTCCAACGTTTTTACCTCAATTTTAACATTGTC
AATAATTTTGAACTTCTAAATATCGAGGGTACTGTAGTATTATTAATCAC
TGTTTGATTTTTCAACAGAATCTATCAGATTTCTCTATACCAGCAGATAC
CAGCACTGTGTAACCAAATTCTAACCTTTTCTTCGTCTTATTTGTGCTTT
CAAGGAAGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGTTATATGCGAA
CGAATGAAGATGACTTTCTTCCTTTCACCTCCAACACGAATACCGGTGAC
ATGCTTAGCACTGGTGAGTTTTCAATGGTTGTTGACTGTTAGAAAGTTTT
TTGAAATTACTGACCTATCAAAGGTTCCTATACCAATAAAATATTTTGAA
GAATCAAACTGGTTCTTATTTTTGGACCTACCTCNNNNNNNNNNNNNNNN
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TTTTTCATTTTTCTTTTCGCATTGCTATCTAACTTTAATCATCAGGTAGG
TCCATTCAGCATATTGCTTGTTATATTTAAAGCTTTTAAAAAGGAAACGG
TGAAAATCACGATTAAAAGCTTTCGCAACGCTCTCTTTTCGGTACTCCTA
AAATAGAGTGCACCGCCAGAAACGACGGCCGATTTCAAACCACTATGAAT
CTTTTTCGACACTTTGAATAATTTTGTTTTTGTTACAGAGGAGTATGGGA
AGTACTGTGATGACATAGAGAATACTACCACGTGGGGTGGTCAACTAGAG
GTATGTTATTTCATTGTAAAGCTCATATCCGGGGGGAGGGGGGCTACTCG
ATTTCGAAATGACGGTATGTGCTTTTCAAAATCTGCTTTTCAAAATCTGC
TTTTCAAAATCGTACCCTTACAGTGCAGTTCAATATGGCTGAACAGGTAC
CCTTTCAGTGCATTTTCTCATGATTTACCCAACCCTTATAGTGCACTATA
TTTTTCAGTTGTAAATCTGCATGAAAAAAGAAGCTTGGGAAATTTTCTGT
TTCAAAGAAAAACTCAGAAAATTATTTTTGTCAGCTGTAATTATCAGACA
ATAGAAACTTTTTCAAACAAACGAGAAGTAAAAACCTTTATTTTTATCAG
TTATTTTGAATTTGTTTTAATTCGACTCTTGCAGTGCTATCTGACAGAAA
CACACCCTTACAGTGCATTTTGGGATGCTGAAAAACCCGGTACATGACGT
AAGCCAGATCATATGAGTGCCCCCCTCCCCCTGGGGCTCATATATCTGAG
GTTTCGCTGTTATCTTTTTACTGCTGGCCAGAGTAACTGACATTGCTTCT
CAAAGAATCAGTATATTACTGCTAGTATGAAAAGCTCGAAAAGGTTTCGA
AAAAGAAATGTCCTCCTCTTTACAGATTCGTGCGATATCGAACGTGTATC
AACAAAGAGTGGAGATTTATCAAGCCAACGCTCCCAGGCTAGTGATCGGT
GAAGAACATGTAGCCTCTACTCCTCTTCGATTATCGTAAGTTGCCTTTTT
GATGTAAACTCTGATTTTAATTATCGCCAAAAACCAAAGACCCCACACTG
ATAAAGTTTATAAAGCCTCTGACATTGCAATTTAATCTTTGACCTAGAAA
GCCTTATGCTTAATATCTGGAATATGCTCAGTCAGAGGCGTAACCACGGG
TTTTCGTTTCGGGGGATGAGATTGGAAAATTTTTGACCTTTTTAGGGGGA
ATTTTTGGAGAAGATTTTTCTCGTAACTTATGCTCCGCGGGCGTCAATTG
CTGCTCTAAGAAATCTCAAGTTGCTTGAAAAAGAGGCATCTGAAGGTCAA
TGTTAGCGAGAGTAAGATCACAAAAAGTGCGGAAAAACTTAAAATTTCAT
GTCGCAGAGAGTTTTCTTTGTAATCTTGGCGCCGCAGGCAAAAAGAAAAT
AGCTAACCAGGCGGACCACAGGGAGGCTTTTATTTAAGATTTGGAATCCT
AAAAGTGAAAATAACGCCATAGTAACAGCAAAAAAGAAAAAAAAGCTGGA
ATTTGTCCACTGTTTGCTATTTATAGTAACAGAAATTCTGTTTTTTTTCT
TTGGTTGTTTCCAATAAGAAGAATGACGTAATCTTAACTTGTGCGAAATT
CTCTCTTTCACCTTTGCAGGCAACTTGAATGAATGCAACTTGAAATACAT
AATTTATTATCGCTATTTATAGAAATTTTCGTAGAATTGACAGTTAGTGT
GACAGATGCGATGTCGTTTGTTTTTGTCAATAATTTATATACCCCTTACC
TGTTGTTATCTCCTGTCCATTTTTAAGTTCCAGAAAACTAATACAATTTT
TTAAATCGCAACCATCCTCGTATGAGTAAAAATAATATTTAATATAGTAC
CATGAATGACATTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024609XLOC_024609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040476-exon-sc0002439-1575043694:18978..19103TCONS_00040476-exon-sc0002439-1575043694:18978..19103Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1575043694:18641..18749TCONS_00040476-exon-sc0002439-1575043694:18641..18749Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1575043694:16104..16165TCONS_00040476-exon-sc0002439-1575043694:16104..16165Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1575043694:15369..15478TCONS_00040476-exon-sc0002439-1575043694:15369..15478Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1575043694:14488..14734TCONS_00040476-exon-sc0002439-1575043694:14488..14734Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1510915933:18978..19103TCONS_00040476-exon-sc0002439-1510915933:18978..19103Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1510915933:18641..18749TCONS_00040476-exon-sc0002439-1510915933:18641..18749Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1510915933:16104..16165TCONS_00040476-exon-sc0002439-1510915933:16104..16165Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1510915933:15369..15478TCONS_00040476-exon-sc0002439-1510915933:15369..15478Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1510915933:14488..14734TCONS_00040476-exon-sc0002439-1510915933:14488..14734Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1491911889:18978..19103TCONS_00040476-exon-sc0002439-1491911889:18978..19103Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1491911889:18641..18749TCONS_00040476-exon-sc0002439-1491911889:18641..18749Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1491911889:16104..16165TCONS_00040476-exon-sc0002439-1491911889:16104..16165Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1491911889:15369..15478TCONS_00040476-exon-sc0002439-1491911889:15369..15478Clytia hemisphaericaexon
TCONS_00040476-exon-sc0002439-1491911889:14488..14734TCONS_00040476-exon-sc0002439-1491911889:14488..14734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002439supercontigsc0002439:14488..19103 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.69	2.21003	3.78168	5.41485	2.9756	2.79451	2.32159	3.21712	1.87188	1.583	0	1.69607	1.14543	0	0.323649	0.227779	3.86537	0.685214	0	0.929487	0	2.2756	0.817049	0.509774	1.13388	0.671149	0	0.594285	1.08848	3.13354
Blast
[Close]
BLAST of TCONS_00040476 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.100e-28
Identity = 47/88 (53.41%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:  142 LRQKTAGYMRTNEDDFLPFTSNTNTGDMLSTEEYGKYCDDIENTTTWGGQLEIRAISNVYQQRVEIYQANAPRLVIGEEHVASTPLRL 405
            LR +TA YM+++ +DFLPF +N NTGDM + EE+ KYC+DI NT  WGGQLE+RA+S++ Q  +EI QA++P +++GEE+ +  PL L
Sbjct:  179 LRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEY-SKKPLIL 265
The following BLAST results are available for this feature:
BLAST of TCONS_00040476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTU6B2.100e-2853.41OTU domain-containing protein 6B OS=Homo sapiens G... [more]
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