TCONS_00040477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040477
Unique NameTCONS_00040477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040477 ID=TCONS_00040477|Name=TCONS_00040477|organism=Clytia hemisphaerica|type=transcript|length=538bp
CAGTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAG
AAGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGTTATATGCGAACGAAT
GAAGATGACTTTCTTCCTTTCACCTCCAACACGAATACCGGTGACATGCT
TAGCACTGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTACCA
CGTGGGGTGGTCAACTAGAGATTCGTGCGATATCGAACGTGTATCAACAA
AGAGTGGAGATTTATCAAGCCAACGCTCCCAGGCTAGTGATCGGTGAAGA
ACATGTAGCCTCTACTCCTCTTCGATTATCGTAAGTTGCCTTTTTGATGT
AAACTCTGATTTTAATTATCGCCAAAAACCAAAGACCCCACACTGATAAA
GTTTATAAAGCCTCTGACATTGCAATTTAATCTTTGACCTAGAAAGCCTT
ATGCTTAATATCTGGAATATGCTCAGTCAGAGGCGTAACCACGGGTTTTC
GTTTCGGGGGATgagattggaaaatttttgaccttttt
Run BLAST on NCBI

transcript from alignment at sc0002439:15161..19026-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040477 ID=TCONS_00040477|Name=TCONS_00040477|organism=Clytia hemisphaerica|type=transcript|length=3866bp|location=Sequence derived from alignment at sc0002439:15161..19026- (Clytia hemisphaerica)
CAGTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAG
TAAGTTATTTTTGCTGTTCTCAACAAGTGAAATGAACTGTCTCCAACGTT
TTTACCTCAATTTTAACATTGTCAATAATTTTGAACTTCTAAATATCGAG
GGTACTGTAGTATTATTAATCACTGTTTGATTTTTCAACAGAATCTATCA
GATTTCTCTATACCAGCAGATACCAGCACTGTGTAACCAAATTCTAACCT
TTTCTTCGTCTTATTTGTGCTTTCAAGGAAGCGTTGAAAGAGTTACGGCA
AAAGACGGCAGGTTATATGCGAACGAATGAAGATGACTTTCTTCCTTTCA
CCTCCAACACGAATACCGGTGACATGCTTAGCACTGGTGAGTTTTCAATG
GTTGTTGACTGTTAGAAAGTTTTTTGAAATTACTGACCTATCAAAGGTTC
CTATACCAATAAAATATTTTGAAGAATCAAACTGGTTCTTATTTTTGGAC
CTACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AACGCTATATTTTCTGACTGATTTTTTTCATTTTTCTTTTCGCATTGCTA
TCTAACTTTAATCATCAGGTAGGTCCATTCAGCATATTGCTTGTTATATT
TAAAGCTTTTAAAAAGGAAACGGTGAAAATCACGATTAAAAGCTTTCGCA
ACGCTCTCTTTTCGGTACTCCTAAAATAGAGTGCACCGCCAGAAACGACG
GCCGATTTCAAACCACTATGAATCTTTTTCGACACTTTGAATAATTTTGT
TTTTGTTACAGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTA
CCACGTGGGGTGGTCAACTAGAGGTATGTTATTTCATTGTAAAGCTCATA
TCCGGGGGGAGGGGGGCTACTCGATTTCGAAATGACGGTATGTGCTTTTC
AAAATCTGCTTTTCAAAATCTGCTTTTCAAAATCGTACCCTTACAGTGCA
GTTCAATATGGCTGAACAGGTACCCTTTCAGTGCATTTTCTCATGATTTA
CCCAACCCTTATAGTGCACTATATTTTTCAGTTGTAAATCTGCATGAAAA
AAGAAGCTTGGGAAATTTTCTGTTTCAAAGAAAAACTCAGAAAATTATTT
TTGTCAGCTGTAATTATCAGACAATAGAAACTTTTTCAAACAAACGAGAA
GTAAAAACCTTTATTTTTATCAGTTATTTTGAATTTGTTTTAATTCGACT
CTTGCAGTGCTATCTGACAGAAACACACCCTTACAGTGCATTTTGGGATG
CTGAAAAACCCGGTACATGACGTAAGCCAGATCATATGAGTGCCCCCCTC
CCCCTGGGGCTCATATATCTGAGGTTTCGCTGTTATCTTTTTACTGCTGG
CCAGAGTAACTGACATTGCTTCTCAAAGAATCAGTATATTACTGCTAGTA
TGAAAAGCTCGAAAAGGTTTCGAAAAAGAAATGTCCTCCTCTTTACAGAT
TCGTGCGATATCGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGCCA
ACGCTCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTT
CGATTATCGTAAGTTGCCTTTTTGATGTAAACTCTGATTTTAATTATCGC
CAAAAACCAAAGACCCCACACTGATAAAGTTTATAAAGCCTCTGACATTG
CAATTTAATCTTTGACCTAGAAAGCCTTATGCTTAATATCTGGAATATGC
TCAGTCAGAGGCGTAACCACGGGTTTTCGTTTCGGGGGATGAGATTGGAA
AATTTTTGACCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024609XLOC_024609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040477-exon-sc0002439-1575043694:18978..19026TCONS_00040477-exon-sc0002439-1575043694:18978..19026Clytia hemisphaericaexon
TCONS_00040477-exon-sc0002439-1575043694:18641..18749TCONS_00040477-exon-sc0002439-1575043694:18641..18749Clytia hemisphaericaexon
TCONS_00040477-exon-sc0002439-1575043694:16104..16165TCONS_00040477-exon-sc0002439-1575043694:16104..16165Clytia hemisphaericaexon
TCONS_00040477-exon-sc0002439-1575043694:15161..15478TCONS_00040477-exon-sc0002439-1575043694:15161..15478Clytia hemisphaericaexon
TCONS_00040477-exon-sc0002439-1510915933:18978..19026TCONS_00040477-exon-sc0002439-1510915933:18978..19026Clytia hemisphaericaexon
TCONS_00040477-exon-sc0002439-1510915933:18641..18749TCONS_00040477-exon-sc0002439-1510915933:18641..18749Clytia hemisphaericaexon
TCONS_00040477-exon-sc0002439-1510915933:16104..16165TCONS_00040477-exon-sc0002439-1510915933:16104..16165Clytia hemisphaericaexon
TCONS_00040477-exon-sc0002439-1510915933:15161..15478TCONS_00040477-exon-sc0002439-1510915933:15161..15478Clytia hemisphaericaexon
TCONS_00040477-exon-sc0002439-1491911889:18978..19026TCONS_00040477-exon-sc0002439-1491911889:18978..19026Clytia hemisphaericaexon
TCONS_00040477-exon-sc0002439-1491911889:18641..18749TCONS_00040477-exon-sc0002439-1491911889:18641..18749Clytia hemisphaericaexon
TCONS_00040477-exon-sc0002439-1491911889:16104..16165TCONS_00040477-exon-sc0002439-1491911889:16104..16165Clytia hemisphaericaexon
TCONS_00040477-exon-sc0002439-1491911889:15161..15478TCONS_00040477-exon-sc0002439-1491911889:15161..15478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002439supercontigsc0002439:15161..19026 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.106992	0	0	0.592665	0.377767	0.709794	0	0.811963	0.301577	0.618808	0.311067	0.539325	1.27148	0	0.637991	0.42122	0.635491	0.80023	0	0.894821	1.24005	0.859302	0	0.594006	0.594224	0.535457	0.511879	0.393157	0	0
Blast
[Close]
BLAST of TCONS_00040477 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.934e-29
Identity = 47/88 (53.41%), Postives = 68/88 (77.27%), Query Frame = 2 
Query:   65 LRQKTAGYMRTNEDDFLPFTSNTNTGDMLSTEEYGKYCDDIENTTTWGGQLEIRAISNVYQQRVEIYQANAPRLVIGEEHVASTPLRL 328
            LR +TA YM+++ +DFLPF +N NTGDM + EE+ KYC+DI NT  WGGQLE+RA+S++ Q  +EI QA++P +++GEE+ +  PL L
Sbjct:  179 LRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEY-SKKPLIL 265
The following BLAST results are available for this feature:
BLAST of TCONS_00040477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTU6B6.934e-2953.41OTU domain-containing protein 6B OS=Homo sapiens G... [more]
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