TCONS_00040472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040472
Unique NameTCONS_00040472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040472 ID=TCONS_00040472|Name=TCONS_00040472|organism=Clytia hemisphaerica|type=transcript|length=573bp
CGTAGACAATTCActctttaatttttcatttccatCTCGTTTTCTCTGAT
TTCAGTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAA
AGAAGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGTTATATGCGAACGA
ATGAAGATGACTTTCTTCCTTTCACCTCCAACACGAATACCGGTGACATG
CTTAGCACTGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTAC
CACGTGGGGTGGTCAACTAGAGATTCGTGCGATATCGAACGTGTATCAAC
AAAGAGTGGAGATTTATCAAGCCAACGCTCCCAGGCTAGTGATCGGTGAA
GAACATGTAGCCTCTACTCCTCTTCGATTATCGATTTATGCGTCTTCGCT
AAGATGGGTACTGGACACAAAGCCACAGCCAAAATCAGAGTCTTCCCAAC
GCGAGAAGAAGATGCCGCTacgaaaataaaggaaaaattgCAACATGATT
CCTTTGGAAATCAAGAATATGATAATTTTTTGGAAGACGAAAAAGATTCG
TCCAACCGAACCTCCAGAGCTGC
Run BLAST on NCBI

transcript from alignment at sc0002439:13590..19078-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040472 ID=TCONS_00040472|Name=TCONS_00040472|organism=Clytia hemisphaerica|type=transcript|length=5489bp|location=Sequence derived from alignment at sc0002439:13590..19078- (Clytia hemisphaerica)
CGTAGACAATTCACTCTTTAATTTTTCATTTCCATCTCGTTTTCTCTGAT
TTCAGTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAA
AGTAAGTTATTTTTGCTGTTCTCAACAAGTGAAATGAACTGTCTCCAACG
TTTTTACCTCAATTTTAACATTGTCAATAATTTTGAACTTCTAAATATCG
AGGGTACTGTAGTATTATTAATCACTGTTTGATTTTTCAACAGAATCTAT
CAGATTTCTCTATACCAGCAGATACCAGCACTGTGTAACCAAATTCTAAC
CTTTTCTTCGTCTTATTTGTGCTTTCAAGGAAGCGTTGAAAGAGTTACGG
CAAAAGACGGCAGGTTATATGCGAACGAATGAAGATGACTTTCTTCCTTT
CACCTCCAACACGAATACCGGTGACATGCTTAGCACTGGTGAGTTTTCAA
TGGTTGTTGACTGTTAGAAAGTTTTTTGAAATTACTGACCTATCAAAGGT
TCCTATACCAATAAAATATTTTGAAGAATCAAACTGGTTCTTATTTTTGG
ACCTACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TAAACGCTATATTTTCTGACTGATTTTTTTCATTTTTCTTTTCGCATTGC
TATCTAACTTTAATCATCAGGTAGGTCCATTCAGCATATTGCTTGTTATA
TTTAAAGCTTTTAAAAAGGAAACGGTGAAAATCACGATTAAAAGCTTTCG
CAACGCTCTCTTTTCGGTACTCCTAAAATAGAGTGCACCGCCAGAAACGA
CGGCCGATTTCAAACCACTATGAATCTTTTTCGACACTTTGAATAATTTT
GTTTTTGTTACAGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATAC
TACCACGTGGGGTGGTCAACTAGAGGTATGTTATTTCATTGTAAAGCTCA
TATCCGGGGGGAGGGGGGCTACTCGATTTCGAAATGACGGTATGTGCTTT
TCAAAATCTGCTTTTCAAAATCTGCTTTTCAAAATCGTACCCTTACAGTG
CAGTTCAATATGGCTGAACAGGTACCCTTTCAGTGCATTTTCTCATGATT
TACCCAACCCTTATAGTGCACTATATTTTTCAGTTGTAAATCTGCATGAA
AAAAGAAGCTTGGGAAATTTTCTGTTTCAAAGAAAAACTCAGAAAATTAT
TTTTGTCAGCTGTAATTATCAGACAATAGAAACTTTTTCAAACAAACGAG
AAGTAAAAACCTTTATTTTTATCAGTTATTTTGAATTTGTTTTAATTCGA
CTCTTGCAGTGCTATCTGACAGAAACACACCCTTACAGTGCATTTTGGGA
TGCTGAAAAACCCGGTACATGACGTAAGCCAGATCATATGAGTGCCCCCC
TCCCCCTGGGGCTCATATATCTGAGGTTTCGCTGTTATCTTTTTACTGCT
GGCCAGAGTAACTGACATTGCTTCTCAAAGAATCAGTATATTACTGCTAG
TATGAAAAGCTCGAAAAGGTTTCGAAAAAGAAATGTCCTCCTCTTTACAG
ATTCGTGCGATATCGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGC
CAACGCTCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTC
TTCGATTATCGTAAGTTGCCTTTTTGATGTAAACTCTGATTTTAATTATC
GCCAAAAACCAAAGACCCCACACTGATAAAGTTTATAAAGCCTCTGACAT
TGCAATTTAATCTTTGACCTAGAAAGCCTTATGCTTAATATCTGGAATAT
GCTCAGTCAGAGGCGTAACCACGGGTTTTCGTTTCGGGGGATGAGATTGG
AAAATTTTTGACCTTTTTAGGGGGAATTTTTGGAGAAGATTTTTCTCGTA
ACTTATGCTCCGCGGGCGTCAATTGCTGCTCTAAGAAATCTCAAGTTGCT
TGAAAAAGAGGCATCTGAAGGTCAATGTTAGCGAGAGTAAGATCACAAAA
AGTGCGGAAAAACTTAAAATTTCATGTCGCAGAGAGTTTTCTTTGTAATC
TTGGCGCCGCAGGCAAAAAGAAAATAGCTAACCAGGCGGACCACAGGGAG
GCTTTTATTTAAGATTTGGAATCCTAAAAGTGAAAATAACGCCATAGTAA
CAGCAAAAAAGAAAAAAAAGCTGGAATTTGTCCACTGTTTGCTATTTATA
GTAACAGAAATTCTGTTTTTTTTCTTTGGTTGTTTCCAATAAGAAGAATG
ACGTAATCTTAACTTGTGCGAAATTCTCTCTTTCACCTTTGCAGGCAACT
TGAATGAATGCAACTTGAAATACATAATTTATTATCGCTATTTATAGAAA
TTTTCGTAGAATTGACAGTTAGTGTGACAGATGCGATGTCGTTTGTTTTT
GTCAATAATTTATATACCCCTTACCTGTTGTTATCTCCTGTCCATTTTTA
AGTTCCAGAAAACTAATACAATTTTTTAAATCGCAACCATCCTCGTATGA
GTAAAAATAATATTTAATATAGTACCATGAATGACATTTCTATGAATTTT
ATCGATATAGAAAATTTAACTTAACTGGATTAACTGGATTTATGAATTTC
GATGTCACATCAGAAAATGTTAATCAAATTTCAAACACTTTGTCTTGATA
ACACGAAGTAGAAGCATTGTGTAAAGATAATATCGATGCAATGGCTTTTC
TCAGTGTTGTTGTTTTGACCTTATCGTTATTACTAAAGTTCGCTTCTACA
ACGGTGTTAGATACTCTATCGAACACTGTCAACAAAGGTGCAACTCTGGC
TGGAGAAAACATCGAATCTTTACTACCCGATGCCGAAGTTGCTTTAGCTG
GATCCATCATTAATTACAGTAAATGGTCTCTCATCGAACGTGAATGGGAA
ATAGAATACGGAGATGTTGATATCCCTGCAGAGACTGTACACCCTGGGTA
CGAGGAAGCTTTTGTTACGGAAAAAGATTCGGCTTTCTTCAAGCTTCATC
ATGGTGTTTCTGGCAAACTGTCATGGGAGGTCAAAACCTTTAATGAATCA
TACATAATTCATTTTATGTATGATATCCCCTATGATTTGGGGTTCAAGGA
GCATAACCAACTGGCTATTGCTCTCTGCTCATCAAACGACAGCCTTTGCC
GGGAACTTTCCCGATCGGATTTGAAATCGAAGACGTACTCTTTCTCCAAA
CGTCGGCTTTACAGATATACCATCGAAGATGTGTCTGTTTGTAACCAGGA
TTTATGCGTCTTCGCTAAGATGGGTACTGGACACAAAGCCACAGCCAAAA
TCAGAGTCTTCCCAACGCGAGAAGAAGATGCCGCTACGAAAATAAAGGAA
AAATTGCAACATGATTCCTTTGGAAATCAAGAATATGATAATTTTTTGGA
AGACGAAAAAGATTCGTCCAACCGAACCTCCAGAGCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024609XLOC_024609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040472-exon-sc0002439-1575043694:18978..19078TCONS_00040472-exon-sc0002439-1575043694:18978..19078Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1575043694:18641..18749TCONS_00040472-exon-sc0002439-1575043694:18641..18749Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1575043694:16104..16165TCONS_00040472-exon-sc0002439-1575043694:16104..16165Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1575043694:15369..15478TCONS_00040472-exon-sc0002439-1575043694:15369..15478Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1575043694:13590..13780TCONS_00040472-exon-sc0002439-1575043694:13590..13780Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1510915933:18978..19078TCONS_00040472-exon-sc0002439-1510915933:18978..19078Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1510915933:18641..18749TCONS_00040472-exon-sc0002439-1510915933:18641..18749Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1510915933:16104..16165TCONS_00040472-exon-sc0002439-1510915933:16104..16165Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1510915933:15369..15478TCONS_00040472-exon-sc0002439-1510915933:15369..15478Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1510915933:13590..13780TCONS_00040472-exon-sc0002439-1510915933:13590..13780Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1491911889:18978..19078TCONS_00040472-exon-sc0002439-1491911889:18978..19078Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1491911889:18641..18749TCONS_00040472-exon-sc0002439-1491911889:18641..18749Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1491911889:16104..16165TCONS_00040472-exon-sc0002439-1491911889:16104..16165Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1491911889:15369..15478TCONS_00040472-exon-sc0002439-1491911889:15369..15478Clytia hemisphaericaexon
TCONS_00040472-exon-sc0002439-1491911889:13590..13780TCONS_00040472-exon-sc0002439-1491911889:13590..13780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002439supercontigsc0002439:13590..19078 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3442	14.1048	6.91712	4.30614	5.02976	9.27504	7.80867	6.96959	6.70889	8.86333	2.22355	2.16668	0.597128	0.441346	1.04235	1.89274	0.0536655	5.8951	1.14879	3.01011	5.95549	3.41904	6.8677	4.75505	1.08391	2.15307	4.37245	2.30964	0.640702	2.67553
Blast
[Close]
BLAST of TCONS_00040472 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.779e-28
Identity = 47/88 (53.41%), Postives = 68/88 (77.27%), Query Frame = 3 
Query:  117 LRQKTAGYMRTNEDDFLPFTSNTNTGDMLSTEEYGKYCDDIENTTTWGGQLEIRAISNVYQQRVEIYQANAPRLVIGEEHVASTPLRL 380
            LR +TA YM+++ +DFLPF +N NTGDM + EE+ KYC+DI NT  WGGQLE+RA+S++ Q  +EI QA++P +++GEE+ +  PL L
Sbjct:  179 LRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEY-SKKPLIL 265
The following BLAST results are available for this feature:
BLAST of TCONS_00040472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTU6B1.779e-2853.41OTU domain-containing protein 6B OS=Homo sapiens G... [more]
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