TCONS_00040470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040470
Unique NameTCONS_00040470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040470 ID=TCONS_00040470|Name=TCONS_00040470|organism=Clytia hemisphaerica|type=transcript|length=784bp
TTTAAAGTACCTTGTAGGCTCGCAAATAGAAAATTAAGAACGTAGACAAT
TCActctttaatttttcatttccatCTCGTTTTCTCTGATTTCAGTCTGT
ATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGAAGCGTTG
AAAGAGTTACGGCAAAAGACGGCAGGTTATATGCGAACGAATGAAGATGA
CTTTCTTCCTTTCACCTCCAACACGAATACCGGTGACATGCTTAGCACTG
AGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTACCACGTGGGGT
GGTCAACTAGAGATTCGTGCGATATCGAACGTGTATCAACAAAGAGTGGA
GATTTATCAAGCCAACGCTCCCAGGCTAGTGATCGGTGAAGAACATGTAG
CCTCTACTCCTCTTCGATTATCGTGAAATTCTCTTGACTTTGAGTTCACT
TTCATTGCGTGGCTGTCTCACTGAATGTATGTACCATCTTGGATGTCTAT
CCGTTAATTACATGAGAGAAGATTCTACTTGTGAAATCTTGGGGAACATA
ATCCAAAGAAACATTGAACAACACGTGACCGTCTTAACCAATCAGACGGG
TTGGAATCATTTCGAAACAAATTATGACCGAAAAGCTaTTGGAATCACTT
GTTCCCGAAGTAATCCATGCCCATCGGATAAACGTTGTGTTGATAATTGT
GATGGCTTGGCTTCTTGCGTCCCTCTTACAGTCGGTAAGACATCGGAGTA
TCCAATAAGCGACCATTCTGAAAACTAATCTTCC
Run BLAST on NCBI

transcript from alignment at sc0002439:11997..19118-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040470 ID=TCONS_00040470|Name=TCONS_00040470|organism=Clytia hemisphaerica|type=transcript|length=7122bp|location=Sequence derived from alignment at sc0002439:11997..19118- (Clytia hemisphaerica)
TTTAAAGTACCTTGTAGGCTCGCAAATAGAAAATTAAGAACGTAGACAAT
TCACTCTTTAATTTTTCATTTCCATCTCGTTTTCTCTGATTTCAGTCTGT
ATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGTAAGTTAT
TTTTGCTGTTCTCAACAAGTGAAATGAACTGTCTCCAACGTTTTTACCTC
AATTTTAACATTGTCAATAATTTTGAACTTCTAAATATCGAGGGTACTGT
AGTATTATTAATCACTGTTTGATTTTTCAACAGAATCTATCAGATTTCTC
TATACCAGCAGATACCAGCACTGTGTAACCAAATTCTAACCTTTTCTTCG
TCTTATTTGTGCTTTCAAGGAAGCGTTGAAAGAGTTACGGCAAAAGACGG
CAGGTTATATGCGAACGAATGAAGATGACTTTCTTCCTTTCACCTCCAAC
ACGAATACCGGTGACATGCTTAGCACTGGTGAGTTTTCAATGGTTGTTGA
CTGTTAGAAAGTTTTTTGAAATTACTGACCTATCAAAGGTTCCTATACCA
ATAAAATATTTTGAAGAATCAAACTGGTTCTTATTTTTGGACCTACCTCN
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ATTTTCTGACTGATTTTTTTCATTTTTCTTTTCGCATTGCTATCTAACTT
TAATCATCAGGTAGGTCCATTCAGCATATTGCTTGTTATATTTAAAGCTT
TTAAAAAGGAAACGGTGAAAATCACGATTAAAAGCTTTCGCAACGCTCTC
TTTTCGGTACTCCTAAAATAGAGTGCACCGCCAGAAACGACGGCCGATTT
CAAACCACTATGAATCTTTTTCGACACTTTGAATAATTTTGTTTTTGTTA
CAGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTACCACGTGG
GGTGGTCAACTAGAGGTATGTTATTTCATTGTAAAGCTCATATCCGGGGG
GAGGGGGGCTACTCGATTTCGAAATGACGGTATGTGCTTTTCAAAATCTG
CTTTTCAAAATCTGCTTTTCAAAATCGTACCCTTACAGTGCAGTTCAATA
TGGCTGAACAGGTACCCTTTCAGTGCATTTTCTCATGATTTACCCAACCC
TTATAGTGCACTATATTTTTCAGTTGTAAATCTGCATGAAAAAAGAAGCT
TGGGAAATTTTCTGTTTCAAAGAAAAACTCAGAAAATTATTTTTGTCAGC
TGTAATTATCAGACAATAGAAACTTTTTCAAACAAACGAGAAGTAAAAAC
CTTTATTTTTATCAGTTATTTTGAATTTGTTTTAATTCGACTCTTGCAGT
GCTATCTGACAGAAACACACCCTTACAGTGCATTTTGGGATGCTGAAAAA
CCCGGTACATGACGTAAGCCAGATCATATGAGTGCCCCCCTCCCCCTGGG
GCTCATATATCTGAGGTTTCGCTGTTATCTTTTTACTGCTGGCCAGAGTA
ACTGACATTGCTTCTCAAAGAATCAGTATATTACTGCTAGTATGAAAAGC
TCGAAAAGGTTTCGAAAAAGAAATGTCCTCCTCTTTACAGATTCGTGCGA
TATCGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGCCAACGCTCCC
AGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTTCGATTATC
GTAAGTTGCCTTTTTGATGTAAACTCTGATTTTAATTATCGCCAAAAACC
AAAGACCCCACACTGATAAAGTTTATAAAGCCTCTGACATTGCAATTTAA
TCTTTGACCTAGAAAGCCTTATGCTTAATATCTGGAATATGCTCAGTCAG
AGGCGTAACCACGGGTTTTCGTTTCGGGGGATGAGATTGGAAAATTTTTG
ACCTTTTTAGGGGGAATTTTTGGAGAAGATTTTTCTCGTAACTTATGCTC
CGCGGGCGTCAATTGCTGCTCTAAGAAATCTCAAGTTGCTTGAAAAAGAG
GCATCTGAAGGTCAATGTTAGCGAGAGTAAGATCACAAAAAGTGCGGAAA
AACTTAAAATTTCATGTCGCAGAGAGTTTTCTTTGTAATCTTGGCGCCGC
AGGCAAAAAGAAAATAGCTAACCAGGCGGACCACAGGGAGGCTTTTATTT
AAGATTTGGAATCCTAAAAGTGAAAATAACGCCATAGTAACAGCAAAAAA
GAAAAAAAAGCTGGAATTTGTCCACTGTTTGCTATTTATAGTAACAGAAA
TTCTGTTTTTTTTCTTTGGTTGTTTCCAATAAGAAGAATGACGTAATCTT
AACTTGTGCGAAATTCTCTCTTTCACCTTTGCAGGCAACTTGAATGAATG
CAACTTGAAATACATAATTTATTATCGCTATTTATAGAAATTTTCGTAGA
ATTGACAGTTAGTGTGACAGATGCGATGTCGTTTGTTTTTGTCAATAATT
TATATACCCCTTACCTGTTGTTATCTCCTGTCCATTTTTAAGTTCCAGAA
AACTAATACAATTTTTTAAATCGCAACCATCCTCGTATGAGTAAAAATAA
TATTTAATATAGTACCATGAATGACATTTCTATGAATTTTATCGATATAG
AAAATTTAACTTAACTGGATTAACTGGATTTATGAATTTCGATGTCACAT
CAGAAAATGTTAATCAAATTTCAAACACTTTGTCTTGATAACACGAAGTA
GAAGCATTGTGTAAAGATAATATCGATGCAATGGCTTTTCTCAGTGTTGT
TGTTTTGACCTTATCGTTATTACTAAAGTTCGCTTCTACAACGGTGTTAG
ATACTCTATCGAACACTGTCAACAAAGGTGCAACTCTGGCTGGAGAAAAC
ATCGAATCTTTACTACCCGATGCCGAAGTTGCTTTAGCTGGATCCATCAT
TAATTACAGTAAATGGTCTCTCATCGAACGTGAATGGGAAATAGAATACG
GAGATGTTGATATCCCTGCAGAGACTGTACACCCTGGGTACGAGGAAGCT
TTTGTTACGGAAAAAGATTCGGCTTTCTTCAAGCTTCATCATGGTGTTTC
TGGCAAACTGTCATGGGAGGTCAAAACCTTTAATGAATCATACATAATTC
ATTTTATGTATGATATCCCCTATGATTTGGGGTTCAAGGAGCATAACCAA
CTGGCTATTGCTCTCTGCTCATCAAACGACAGCCTTTGCCGGGAACTTTC
CCGATCGGATTTGAAATCGAAGACGTACTCTTTCTCCAAACGTCGGCTTT
ACAGATATACCATCGAAGATGTGTCTGTTTGTAACCAGGATTTATGCGTC
TTCGCTAAGATGGGTACTGGACACAAAGCCACAGCCAAAATCAGAGTCTT
CCCAACGCGAGAAGAAGATGCCGCTACGAAAATAAAGGAAAAATTGCAAC
ATGATTCCTTTGGAAATCAAGAATATGATAATTTTTTGGAAGACGAAAAA
GATTCGTCCAACCGAACCTCCAGAGCTGCTTTTCTCCAATTATATTCATT
CTTCACGATTGTTGTTGTCACCCTCGCATATGTTGGGCTGGTGTAACTTG
ACGATCTTATCGGATGTTATTTCTAACCTGAAGAACCTTTTTTTTAAATT
TAGCAGACACAAACTTGAACAGTGAAAAATGGCACTTTGAAAAACCTTTG
TGACTGATTGAAAACTAGCCATTACAACAGCATAATGAAAAATATACAGT
CAAGCTTGGAAAACAATCTTAAGTTTTTTTTAATTTCTGTTATTATGATT
TTATTACCACCTTTTTTGAATTTTATTTTCCGAAGTATCGCGCACATTTT
TTTCTATATCAAAATTTTGTTCTTTTTTCTACGGTATTTATTGATGGGAG
TTGCTGATGATTCTTGGTGATTCTGGTTTTAGGTGTAATAGACAGACCCT
ATGAAAGACCCTTCATTCTTGAATATAATATAAATATTTTATGAAGACTA
GAAACCCTTGAAAATATATTCCAAGAACCCTGTTAACCATTGACACCCTT
GCTATATAGGGCTCTTTGTATAAAAGTTAATATTTGTGTCACATTTTATT
TTGTGTCTATTTTACGTGATTTTCAATGAAATATTTACGATATTTTAAGA
AATGTTTGTTTCAAATTTTATTCAAAAAAGATAAATTTCCATTTTCATTC
CACGTACAAACAACCGATTGAATTTTTATAAAAATAAGGTTTACTGAAAT
ATATCGCCTGGCAACTAAACTGACTTGAAAGAAATATTGATTGGTTTAGT
CCCTTTTTCATTTAGTATTCAACTCGAGTATTTTTCAAAAATTAATTGAT
TGATCGAAGTTTCTTTGACTCGTCATTTTCGATGTTTTTTGTAAAAGAAA
CCTCTTTACAATGAAGTTGGCACTGAAAATTGCGTTTTGTTTTACCATTT
TCTGCCTAAGTTTCACCTTTTCGCATGTTTTCCAATTAAAACAGTGCAAT
AATTTTGATGCAGAATTTTCCAAAGTCACTTATGGTCAACGGCTTTTAGG
TGAAATTCTCTTGACTTTGAGTTCACTTTCATTGCGTGGCTGTCTCACTG
AATGTATGTACCATCTTGGATGTCTATCCGTTAATTACATGAGAGAAGAT
TCTACTTGTGAAATCTTGGGGAACATAATCCAAAGAAACATTGAACAACA
CGTGACCGTCTTAACCAATCAGACGGGTTGGAATCATTTCGAAACAAATT
ATGACCGAAAAGCTGTAAGTTATCAATATCATTCATTCACTTTTGAACTT
TTAGTGGTCCGAATTTCAAAATTTGAGCTTTCAAAAGCCTCCATTTGAGC
TTTCAAGAGCCTCCATTTGAGCGGTGTACTAAAGTCTTTTGTTGGACCTG
AATCGAGGTTTTGCAGTTGACTTTTCGTAGCTTAAACATCATTATATAAA
CTCTTTATTCTATTTTGTTTTTTAGATTGGAATCACTTGTTCCCGAAGTA
ATCCATGCCCATCGGATAAACGTTGTGTTGATAATTGTGATGGCTTGGCT
TCTTGCGTCCCTCTTACAGTCGGTAAGACATCGGAGTATCCAATAAGCGA
CCATTCTGAAAACTAATCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024609XLOC_024609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040470-exon-sc0002439-1575043694:18978..19118TCONS_00040470-exon-sc0002439-1575043694:18978..19118Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1575043694:18641..18749TCONS_00040470-exon-sc0002439-1575043694:18641..18749Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1575043694:16104..16165TCONS_00040470-exon-sc0002439-1575043694:16104..16165Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1575043694:15369..15478TCONS_00040470-exon-sc0002439-1575043694:15369..15478Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1575043694:12355..12569TCONS_00040470-exon-sc0002439-1575043694:12355..12569Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1575043694:11997..12143TCONS_00040470-exon-sc0002439-1575043694:11997..12143Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1510915933:18978..19118TCONS_00040470-exon-sc0002439-1510915933:18978..19118Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1510915933:18641..18749TCONS_00040470-exon-sc0002439-1510915933:18641..18749Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1510915933:16104..16165TCONS_00040470-exon-sc0002439-1510915933:16104..16165Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1510915933:15369..15478TCONS_00040470-exon-sc0002439-1510915933:15369..15478Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1510915933:12355..12569TCONS_00040470-exon-sc0002439-1510915933:12355..12569Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1510915933:11997..12143TCONS_00040470-exon-sc0002439-1510915933:11997..12143Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1491911889:18978..19118TCONS_00040470-exon-sc0002439-1491911889:18978..19118Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1491911889:18641..18749TCONS_00040470-exon-sc0002439-1491911889:18641..18749Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1491911889:16104..16165TCONS_00040470-exon-sc0002439-1491911889:16104..16165Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1491911889:15369..15478TCONS_00040470-exon-sc0002439-1491911889:15369..15478Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1491911889:12355..12569TCONS_00040470-exon-sc0002439-1491911889:12355..12569Clytia hemisphaericaexon
TCONS_00040470-exon-sc0002439-1491911889:11997..12143TCONS_00040470-exon-sc0002439-1491911889:11997..12143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002439supercontigsc0002439:11997..19118 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.01635	0.652762	0.757919	0	0	0	1.72122	3.22276	1.42929	0.18635	0	0	4.40439	4.51772	0.293136	0.661868	3.06101	0.108296	2.10086	0	0.685687	0.947053	0	2.1933	0	0	0	0	1.48594	0
Blast
[Close]
BLAST of TCONS_00040470 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.607e-28
Identity = 47/88 (53.41%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:  157 LRQKTAGYMRTNEDDFLPFTSNTNTGDMLSTEEYGKYCDDIENTTTWGGQLEIRAISNVYQQRVEIYQANAPRLVIGEEHVASTPLRL 420
            LR +TA YM+++ +DFLPF +N NTGDM + EE+ KYC+DI NT  WGGQLE+RA+S++ Q  +EI QA++P +++GEE+ +  PL L
Sbjct:  179 LRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEY-SKKPLIL 265
The following BLAST results are available for this feature:
BLAST of TCONS_00040470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTU6B5.607e-2853.41OTU domain-containing protein 6B OS=Homo sapiens G... [more]
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