TCONS_00040475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040475
Unique NameTCONS_00040475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040475 ID=TCONS_00040475|Name=TCONS_00040475|organism=Clytia hemisphaerica|type=transcript|length=433bp
AGTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGA
AGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGTTATATGCGAACGAATG
AAGATGACTTTCTTCCTTTCACCTCCAACACGAATACCGGTGACATGCTT
AGCACTGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTACCAC
GTGGGGTGGTCAACTAGAGATTCGTGCGATATCGAACGTGTATCAACAAA
GAGTGGAGATTTATCAAGCCAACGCTCCCAGGCTAGTGATCGGTGAAGAA
CATGTAGCCTCTACTCCTCTTCGATTATCAAAATTTAACTTAACTGGATT
AACTGGATTTATGAATTTCGATGTCACATCAGAAAATGTTAATCAAATTT
CAAACACTTTGTCTTGATAACACGAAGTAGAAG
Run BLAST on NCBI

transcript from alignment at sc0002439:14365..19025-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040475 ID=TCONS_00040475|Name=TCONS_00040475|organism=Clytia hemisphaerica|type=transcript|length=4661bp|location=Sequence derived from alignment at sc0002439:14365..19025- (Clytia hemisphaerica)
AGTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGT
AAGTTATTTTTGCTGTTCTCAACAAGTGAAATGAACTGTCTCCAACGTTT
TTACCTCAATTTTAACATTGTCAATAATTTTGAACTTCTAAATATCGAGG
GTACTGTAGTATTATTAATCACTGTTTGATTTTTCAACAGAATCTATCAG
ATTTCTCTATACCAGCAGATACCAGCACTGTGTAACCAAATTCTAACCTT
TTCTTCGTCTTATTTGTGCTTTCAAGGAAGCGTTGAAAGAGTTACGGCAA
AAGACGGCAGGTTATATGCGAACGAATGAAGATGACTTTCTTCCTTTCAC
CTCCAACACGAATACCGGTGACATGCTTAGCACTGGTGAGTTTTCAATGG
TTGTTGACTGTTAGAAAGTTTTTTGAAATTACTGACCTATCAAAGGTTCC
TATACCAATAAAATATTTTGAAGAATCAAACTGGTTCTTATTTTTGGACC
TACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ACGCTATATTTTCTGACTGATTTTTTTCATTTTTCTTTTCGCATTGCTAT
CTAACTTTAATCATCAGGTAGGTCCATTCAGCATATTGCTTGTTATATTT
AAAGCTTTTAAAAAGGAAACGGTGAAAATCACGATTAAAAGCTTTCGCAA
CGCTCTCTTTTCGGTACTCCTAAAATAGAGTGCACCGCCAGAAACGACGG
CCGATTTCAAACCACTATGAATCTTTTTCGACACTTTGAATAATTTTGTT
TTTGTTACAGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTAC
CACGTGGGGTGGTCAACTAGAGGTATGTTATTTCATTGTAAAGCTCATAT
CCGGGGGGAGGGGGGCTACTCGATTTCGAAATGACGGTATGTGCTTTTCA
AAATCTGCTTTTCAAAATCTGCTTTTCAAAATCGTACCCTTACAGTGCAG
TTCAATATGGCTGAACAGGTACCCTTTCAGTGCATTTTCTCATGATTTAC
CCAACCCTTATAGTGCACTATATTTTTCAGTTGTAAATCTGCATGAAAAA
AGAAGCTTGGGAAATTTTCTGTTTCAAAGAAAAACTCAGAAAATTATTTT
TGTCAGCTGTAATTATCAGACAATAGAAACTTTTTCAAACAAACGAGAAG
TAAAAACCTTTATTTTTATCAGTTATTTTGAATTTGTTTTAATTCGACTC
TTGCAGTGCTATCTGACAGAAACACACCCTTACAGTGCATTTTGGGATGC
TGAAAAACCCGGTACATGACGTAAGCCAGATCATATGAGTGCCCCCCTCC
CCCTGGGGCTCATATATCTGAGGTTTCGCTGTTATCTTTTTACTGCTGGC
CAGAGTAACTGACATTGCTTCTCAAAGAATCAGTATATTACTGCTAGTAT
GAAAAGCTCGAAAAGGTTTCGAAAAAGAAATGTCCTCCTCTTTACAGATT
CGTGCGATATCGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGCCAA
CGCTCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTTC
GATTATCGTAAGTTGCCTTTTTGATGTAAACTCTGATTTTAATTATCGCC
AAAAACCAAAGACCCCACACTGATAAAGTTTATAAAGCCTCTGACATTGC
AATTTAATCTTTGACCTAGAAAGCCTTATGCTTAATATCTGGAATATGCT
CAGTCAGAGGCGTAACCACGGGTTTTCGTTTCGGGGGATGAGATTGGAAA
ATTTTTGACCTTTTTAGGGGGAATTTTTGGAGAAGATTTTTCTCGTAACT
TATGCTCCGCGGGCGTCAATTGCTGCTCTAAGAAATCTCAAGTTGCTTGA
AAAAGAGGCATCTGAAGGTCAATGTTAGCGAGAGTAAGATCACAAAAAGT
GCGGAAAAACTTAAAATTTCATGTCGCAGAGAGTTTTCTTTGTAATCTTG
GCGCCGCAGGCAAAAAGAAAATAGCTAACCAGGCGGACCACAGGGAGGCT
TTTATTTAAGATTTGGAATCCTAAAAGTGAAAATAACGCCATAGTAACAG
CAAAAAAGAAAAAAAAGCTGGAATTTGTCCACTGTTTGCTATTTATAGTA
ACAGAAATTCTGTTTTTTTTCTTTGGTTGTTTCCAATAAGAAGAATGACG
TAATCTTAACTTGTGCGAAATTCTCTCTTTCACCTTTGCAGGCAACTTGA
ATGAATGCAACTTGAAATACATAATTTATTATCGCTATTTATAGAAATTT
TCGTAGAATTGACAGTTAGTGTGACAGATGCGATGTCGTTTGTTTTTGTC
AATAATTTATATACCCCTTACCTGTTGTTATCTCCTGTCCATTTTTAAGT
TCCAGAAAACTAATACAATTTTTTAAATCGCAACCATCCTCGTATGAGTA
AAAATAATATTTAATATAGTACCATGAATGACATTTCTATGAATTTTATC
GATATAGAAAATTTAACTTAACTGGATTAACTGGATTTATGAATTTCGAT
GTCACATCAGAAAATGTTAATCAAATTTCAAACACTTTGTCTTGATAACA
CGAAGTAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024609XLOC_024609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040475-exon-sc0002439-1575043694:18978..19025TCONS_00040475-exon-sc0002439-1575043694:18978..19025Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1575043694:18641..18749TCONS_00040475-exon-sc0002439-1575043694:18641..18749Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1575043694:16104..16165TCONS_00040475-exon-sc0002439-1575043694:16104..16165Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1575043694:15369..15478TCONS_00040475-exon-sc0002439-1575043694:15369..15478Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1575043694:14365..14468TCONS_00040475-exon-sc0002439-1575043694:14365..14468Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1510915933:18978..19025TCONS_00040475-exon-sc0002439-1510915933:18978..19025Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1510915933:18641..18749TCONS_00040475-exon-sc0002439-1510915933:18641..18749Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1510915933:16104..16165TCONS_00040475-exon-sc0002439-1510915933:16104..16165Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1510915933:15369..15478TCONS_00040475-exon-sc0002439-1510915933:15369..15478Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1510915933:14365..14468TCONS_00040475-exon-sc0002439-1510915933:14365..14468Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1491911889:18978..19025TCONS_00040475-exon-sc0002439-1491911889:18978..19025Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1491911889:18641..18749TCONS_00040475-exon-sc0002439-1491911889:18641..18749Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1491911889:16104..16165TCONS_00040475-exon-sc0002439-1491911889:16104..16165Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1491911889:15369..15478TCONS_00040475-exon-sc0002439-1491911889:15369..15478Clytia hemisphaericaexon
TCONS_00040475-exon-sc0002439-1491911889:14365..14468TCONS_00040475-exon-sc0002439-1491911889:14365..14468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002439supercontigsc0002439:14365..19025 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0667654	0	11.5448	0.000429218	0	7.07764	0	0	0	0	0	0	0	3.62371	0	0	0	0.0685509	0	1.65179	0	0	0	0.424842	0	0	2.45485	0
Blast
[Close]
BLAST of TCONS_00040475 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.312e-29
Identity = 47/88 (53.41%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:   64 LRQKTAGYMRTNEDDFLPFTSNTNTGDMLSTEEYGKYCDDIENTTTWGGQLEIRAISNVYQQRVEIYQANAPRLVIGEEHVASTPLRL 327
            LR +TA YM+++ +DFLPF +N NTGDM + EE+ KYC+DI NT  WGGQLE+RA+S++ Q  +EI QA++P +++GEE+ +  PL L
Sbjct:  179 LRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEY-SKKPLIL 265
The following BLAST results are available for this feature:
BLAST of TCONS_00040475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTU6B3.312e-2953.41OTU domain-containing protein 6B OS=Homo sapiens G... [more]
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