TCONS_00040466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040466
Unique NameTCONS_00040466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040466 ID=TCONS_00040466|Name=TCONS_00040466|organism=Clytia hemisphaerica|type=transcript|length=694bp
CTCGCAAATAGAAAATTAAGAACGTAGACAATTCActctttaatttttca
tttccatCTCGTTTTCTCTGATTTCAGTCTGTATAATTCGGTTATCGTTC
AAAAGTTTGGTTCATCCACCAAAGAAGCGTTGAAAGAGTTACGGCAAAAG
ACGGCAGGTTATATGCGAACGAATGAAGATGACTTTCTTCCTTTCACCTC
CAACACGAATACCGGTGACATGCTTAGCACTGAGGAGTATGGGAAGTACT
GTGATGACATAGAGAATACTACCACGTGGGGTGGTCAACTAGAGATTCGT
GCGATATCGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGCCAACGC
TCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTTCGAT
TATCTTCACTTTCATTGCGTGGCTGTCTCACTGAATGTATGTACCATCTT
GGATGTCTATCCGTTAATTACATGAGAGAAGATTCTACTTGTGAAATCTT
GGGGAACATAATCCAAAGAAACATTGAACAACACGTGACCGTCTTAACCA
ATCAGACGGGTTGGAATCATTTCGAAACAAATTATGACCGAAAAGCTaTT
GGAATCACTTGTTCCCGAAGTAATCCATGCCCATCGGATAAACGTTGTGT
TGATAATTGTGATGGCTTGGCTTCTTGCGTCCCTCTTACAGTCG
Run BLAST on NCBI

transcript from alignment at sc0002439:11068..19100-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040466 ID=TCONS_00040466|Name=TCONS_00040466|organism=Clytia hemisphaerica|type=transcript|length=8033bp|location=Sequence derived from alignment at sc0002439:11068..19100- (Clytia hemisphaerica)
CTCGCAAATAGAAAATTAAGAACGTAGACAATTCACTCTTTAATTTTTCA
TTTCCATCTCGTTTTCTCTGATTTCAGTCTGTATAATTCGGTTATCGTTC
AAAAGTTTGGTTCATCCACCAAAGTAAGTTATTTTTGCTGTTCTCAACAA
GTGAAATGAACTGTCTCCAACGTTTTTACCTCAATTTTAACATTGTCAAT
AATTTTGAACTTCTAAATATCGAGGGTACTGTAGTATTATTAATCACTGT
TTGATTTTTCAACAGAATCTATCAGATTTCTCTATACCAGCAGATACCAG
CACTGTGTAACCAAATTCTAACCTTTTCTTCGTCTTATTTGTGCTTTCAA
GGAAGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGTTATATGCGAACGA
ATGAAGATGACTTTCTTCCTTTCACCTCCAACACGAATACCGGTGACATG
CTTAGCACTGGTGAGTTTTCAATGGTTGTTGACTGTTAGAAAGTTTTTTG
AAATTACTGACCTATCAAAGGTTCCTATACCAATAAAATATTTTGAAGAA
TCAAACTGGTTCTTATTTTTGGACCTACCTCNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNCTAAACGCTATATTTTCTGACTGATTTTT
TTCATTTTTCTTTTCGCATTGCTATCTAACTTTAATCATCAGGTAGGTCC
ATTCAGCATATTGCTTGTTATATTTAAAGCTTTTAAAAAGGAAACGGTGA
AAATCACGATTAAAAGCTTTCGCAACGCTCTCTTTTCGGTACTCCTAAAA
TAGAGTGCACCGCCAGAAACGACGGCCGATTTCAAACCACTATGAATCTT
TTTCGACACTTTGAATAATTTTGTTTTTGTTACAGAGGAGTATGGGAAGT
ACTGTGATGACATAGAGAATACTACCACGTGGGGTGGTCAACTAGAGGTA
TGTTATTTCATTGTAAAGCTCATATCCGGGGGGAGGGGGGCTACTCGATT
TCGAAATGACGGTATGTGCTTTTCAAAATCTGCTTTTCAAAATCTGCTTT
TCAAAATCGTACCCTTACAGTGCAGTTCAATATGGCTGAACAGGTACCCT
TTCAGTGCATTTTCTCATGATTTACCCAACCCTTATAGTGCACTATATTT
TTCAGTTGTAAATCTGCATGAAAAAAGAAGCTTGGGAAATTTTCTGTTTC
AAAGAAAAACTCAGAAAATTATTTTTGTCAGCTGTAATTATCAGACAATA
GAAACTTTTTCAAACAAACGAGAAGTAAAAACCTTTATTTTTATCAGTTA
TTTTGAATTTGTTTTAATTCGACTCTTGCAGTGCTATCTGACAGAAACAC
ACCCTTACAGTGCATTTTGGGATGCTGAAAAACCCGGTACATGACGTAAG
CCAGATCATATGAGTGCCCCCCTCCCCCTGGGGCTCATATATCTGAGGTT
TCGCTGTTATCTTTTTACTGCTGGCCAGAGTAACTGACATTGCTTCTCAA
AGAATCAGTATATTACTGCTAGTATGAAAAGCTCGAAAAGGTTTCGAAAA
AGAAATGTCCTCCTCTTTACAGATTCGTGCGATATCGAACGTGTATCAAC
AAAGAGTGGAGATTTATCAAGCCAACGCTCCCAGGCTAGTGATCGGTGAA
GAACATGTAGCCTCTACTCCTCTTCGATTATCGTAAGTTGCCTTTTTGAT
GTAAACTCTGATTTTAATTATCGCCAAAAACCAAAGACCCCACACTGATA
AAGTTTATAAAGCCTCTGACATTGCAATTTAATCTTTGACCTAGAAAGCC
TTATGCTTAATATCTGGAATATGCTCAGTCAGAGGCGTAACCACGGGTTT
TCGTTTCGGGGGATGAGATTGGAAAATTTTTGACCTTTTTAGGGGGAATT
TTTGGAGAAGATTTTTCTCGTAACTTATGCTCCGCGGGCGTCAATTGCTG
CTCTAAGAAATCTCAAGTTGCTTGAAAAAGAGGCATCTGAAGGTCAATGT
TAGCGAGAGTAAGATCACAAAAAGTGCGGAAAAACTTAAAATTTCATGTC
GCAGAGAGTTTTCTTTGTAATCTTGGCGCCGCAGGCAAAAAGAAAATAGC
TAACCAGGCGGACCACAGGGAGGCTTTTATTTAAGATTTGGAATCCTAAA
AGTGAAAATAACGCCATAGTAACAGCAAAAAAGAAAAAAAAGCTGGAATT
TGTCCACTGTTTGCTATTTATAGTAACAGAAATTCTGTTTTTTTTCTTTG
GTTGTTTCCAATAAGAAGAATGACGTAATCTTAACTTGTGCGAAATTCTC
TCTTTCACCTTTGCAGGCAACTTGAATGAATGCAACTTGAAATACATAAT
TTATTATCGCTATTTATAGAAATTTTCGTAGAATTGACAGTTAGTGTGAC
AGATGCGATGTCGTTTGTTTTTGTCAATAATTTATATACCCCTTACCTGT
TGTTATCTCCTGTCCATTTTTAAGTTCCAGAAAACTAATACAATTTTTTA
AATCGCAACCATCCTCGTATGAGTAAAAATAATATTTAATATAGTACCAT
GAATGACATTTCTATGAATTTTATCGATATAGAAAATTTAACTTAACTGG
ATTAACTGGATTTATGAATTTCGATGTCACATCAGAAAATGTTAATCAAA
TTTCAAACACTTTGTCTTGATAACACGAAGTAGAAGCATTGTGTAAAGAT
AATATCGATGCAATGGCTTTTCTCAGTGTTGTTGTTTTGACCTTATCGTT
ATTACTAAAGTTCGCTTCTACAACGGTGTTAGATACTCTATCGAACACTG
TCAACAAAGGTGCAACTCTGGCTGGAGAAAACATCGAATCTTTACTACCC
GATGCCGAAGTTGCTTTAGCTGGATCCATCATTAATTACAGTAAATGGTC
TCTCATCGAACGTGAATGGGAAATAGAATACGGAGATGTTGATATCCCTG
CAGAGACTGTACACCCTGGGTACGAGGAAGCTTTTGTTACGGAAAAAGAT
TCGGCTTTCTTCAAGCTTCATCATGGTGTTTCTGGCAAACTGTCATGGGA
GGTCAAAACCTTTAATGAATCATACATAATTCATTTTATGTATGATATCC
CCTATGATTTGGGGTTCAAGGAGCATAACCAACTGGCTATTGCTCTCTGC
TCATCAAACGACAGCCTTTGCCGGGAACTTTCCCGATCGGATTTGAAATC
GAAGACGTACTCTTTCTCCAAACGTCGGCTTTACAGATATACCATCGAAG
ATGTGTCTGTTTGTAACCAGGATTTATGCGTCTTCGCTAAGATGGGTACT
GGACACAAAGCCACAGCCAAAATCAGAGTCTTCCCAACGCGAGAAGAAGA
TGCCGCTACGAAAATAAAGGAAAAATTGCAACATGATTCCTTTGGAAATC
AAGAATATGATAATTTTTTGGAAGACGAAAAAGATTCGTCCAACCGAACC
TCCAGAGCTGCTTTTCTCCAATTATATTCATTCTTCACGATTGTTGTTGT
CACCCTCGCATATGTTGGGCTGGTGTAACTTGACGATCTTATCGGATGTT
ATTTCTAACCTGAAGAACCTTTTTTTTAAATTTAGCAGACACAAACTTGA
ACAGTGAAAAATGGCACTTTGAAAAACCTTTGTGACTGATTGAAAACTAG
CCATTACAACAGCATAATGAAAAATATACAGTCAAGCTTGGAAAACAATC
TTAAGTTTTTTTTAATTTCTGTTATTATGATTTTATTACCACCTTTTTTG
AATTTTATTTTCCGAAGTATCGCGCACATTTTTTTCTATATCAAAATTTT
GTTCTTTTTTCTACGGTATTTATTGATGGGAGTTGCTGATGATTCTTGGT
GATTCTGGTTTTAGGTGTAATAGACAGACCCTATGAAAGACCCTTCATTC
TTGAATATAATATAAATATTTTATGAAGACTAGAAACCCTTGAAAATATA
TTCCAAGAACCCTGTTAACCATTGACACCCTTGCTATATAGGGCTCTTTG
TATAAAAGTTAATATTTGTGTCACATTTTATTTTGTGTCTATTTTACGTG
ATTTTCAATGAAATATTTACGATATTTTAAGAAATGTTTGTTTCAAATTT
TATTCAAAAAAGATAAATTTCCATTTTCATTCCACGTACAAACAACCGAT
TGAATTTTTATAAAAATAAGGTTTACTGAAATATATCGCCTGGCAACTAA
ACTGACTTGAAAGAAATATTGATTGGTTTAGTCCCTTTTTCATTTAGTAT
TCAACTCGAGTATTTTTCAAAAATTAATTGATTGATCGAAGTTTCTTTGA
CTCGTCATTTTCGATGTTTTTTGTAAAAGAAACCTCTTTACAATGAAGTT
GGCACTGAAAATTGCGTTTTGTTTTACCATTTTCTGCCTAAGTTTCACCT
TTTCGCATGTTTTCCAATTAAAACAGTGCAATAATTTTGATGCAGAATTT
TCCAAAGTCACTTATGGTCAACGGCTTTTAGGTGAAATTCTCTTGACTTT
GAGTTCACTTTCATTGCGTGGCTGTCTCACTGAATGTATGTACCATCTTG
GATGTCTATCCGTTAATTACATGAGAGAAGATTCTACTTGTGAAATCTTG
GGGAACATAATCCAAAGAAACATTGAACAACACGTGACCGTCTTAACCAA
TCAGACGGGTTGGAATCATTTCGAAACAAATTATGACCGAAAAGCTGTAA
GTTATCAATATCATTCATTCACTTTTGAACTTTTAGTGGTCCGAATTTCA
AAATTTGAGCTTTCAAAAGCCTCCATTTGAGCTTTCAAGAGCCTCCATTT
GAGCGGTGTACTAAAGTCTTTTGTTGGACCTGAATCGAGGTTTTGCAGTT
GACTTTTCGTAGCTTAAACATCATTATATAAACTCTTTATTCTATTTTGT
TTTTTAGATTGGAATCACTTGTTCCCGAAGTAATCCATGCCCATCGGATA
AACGTTGTGTTGATAATTGTGATGGCTTGGCTTCTTGCGTCCCTCTTACA
GTCGGTAAGACATCGGAGTATCCAATAAGCGACCATTCTGAAAACTAATC
TTCCTTCCTTCTCTTCACTATTTAGGCGCCATTGCTTTTTTGGACCTACC
TCGGAGGTCCTTTAAATTAATGTTCGTCCGTCCGTCCGTCCGTCCGTTCG
TTCGTTCGTCTGTTACCAGTTTTTCTCGGGATTGGCTCATTACTTTATTC
TGTTTTTTGGCGCAATGATGCAAAATGATGATTCCTAAAAAGTGAGGGAG
CCCGATTTTCGAAAAAAATTTTCCGGTCGTATGCCGGAAAACTGTNTTTT
TGTAAAAGAAACCTCTTTACAATGAAGTTGGCACTGAAAATTGCGTTTTG
TTTTACCATTTTCTGCCTAAGTTTCACCTTTTCGCATGTTTTCCAATTAA
AACAGTGCAATAATTTTGATGCAGAATTTTCCAAAGTCACTTATGGTCAA
CGGCTTTTAGGTGAAATTCTCTTGACTTTGAGTTCACTCTCATTGCGTGG
CTGTCTCACTGAATGTATGTACCATCTTGGATGTCTATCCGTTAATTACA
TGAGAGAGGATTCTACTTGTGAAATCTTGGGGAACATAATCCAAAGAAAC
ATTGAACAACACGTGACCGTCTTAACCAATCAGACGGGTTGGAATCATTT
CGAAACAAATTATGACCGAAAAGCTGTAAGTTATCAATATCATTCATTCA
CTTTTGAACTTTTAGTGGTCCGAATTTCAAAATTTGAGCTTTCAAAAGCC
TCCATTTGAGCTTTCAAGAGCCTCCATTTGAGCGGTGTACTAAAGTCTTT
TGTTGGACCTGAATCGAGGTTTTGCAGTTGACTTTTCGTAGCTTAAACAT
CATTATATAAACTCTTTATTCTATTTTGTTTTTTAGATTGGAATCACTTG
TTCCCGAAGTAATCCATGCCCATCGGATAAACGTTGTGTTGATAATTGTG
ATGGCTTGGCTTCTTGCGTCCCTCTTACAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024609XLOC_024609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040466-exon-sc0002439-1575043694:18978..19100TCONS_00040466-exon-sc0002439-1575043694:18978..19100Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1575043694:18641..18749TCONS_00040466-exon-sc0002439-1575043694:18641..18749Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1575043694:16104..16165TCONS_00040466-exon-sc0002439-1575043694:16104..16165Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1575043694:15369..15478TCONS_00040466-exon-sc0002439-1575043694:15369..15478Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1575043694:12355..12547TCONS_00040466-exon-sc0002439-1575043694:12355..12547Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1575043694:11068..11164TCONS_00040466-exon-sc0002439-1575043694:11068..11164Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1510915933:18978..19100TCONS_00040466-exon-sc0002439-1510915933:18978..19100Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1510915933:18641..18749TCONS_00040466-exon-sc0002439-1510915933:18641..18749Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1510915933:16104..16165TCONS_00040466-exon-sc0002439-1510915933:16104..16165Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1510915933:15369..15478TCONS_00040466-exon-sc0002439-1510915933:15369..15478Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1510915933:12355..12547TCONS_00040466-exon-sc0002439-1510915933:12355..12547Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1510915933:11068..11164TCONS_00040466-exon-sc0002439-1510915933:11068..11164Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1491911889:18978..19100TCONS_00040466-exon-sc0002439-1491911889:18978..19100Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1491911889:18641..18749TCONS_00040466-exon-sc0002439-1491911889:18641..18749Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1491911889:16104..16165TCONS_00040466-exon-sc0002439-1491911889:16104..16165Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1491911889:15369..15478TCONS_00040466-exon-sc0002439-1491911889:15369..15478Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1491911889:12355..12547TCONS_00040466-exon-sc0002439-1491911889:12355..12547Clytia hemisphaericaexon
TCONS_00040466-exon-sc0002439-1491911889:11068..11164TCONS_00040466-exon-sc0002439-1491911889:11068..11164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002439supercontigsc0002439:11068..19100 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.453647	1.00639	1.26844	0	1.43595	0	0	0	2.98635e-08	0	0	0	2.98342e-08	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00040466 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.800e-27
Identity = 44/80 (55.00%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:  139 LRQKTAGYMRTNEDDFLPFTSNTNTGDMLSTEEYGKYCDDIENTTTWGGQLEIRAISNVYQQRVEIYQANAPRLVIGEEH 378
            LR +TA YM+++ +DFLPF +N NTGDM + EE+ KYC+DI NT  WGGQLE+RA+S++ Q  +EI QA++P +++GEE+
Sbjct:  179 LRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEY 258
The following BLAST results are available for this feature:
BLAST of TCONS_00040466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTU6B1.800e-2755.00OTU domain-containing protein 6B OS=Homo sapiens G... [more]
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