TCONS_00040471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040471
Unique NameTCONS_00040471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040471 ID=TCONS_00040471|Name=TCONS_00040471|organism=Clytia hemisphaerica|type=transcript|length=555bp
CAGTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAG
AAGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGTTATATGCGAACGAAT
GAAGATGACTTTCTTCCTTTCACCTCCAACACGAATACCGGTGACATGCT
TAGCACTGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTACCA
CGTGGGGTGGTCAACTAGAGATTCGTGCGATATCGAACGTGTATCAACAA
AGAGTGGAGATTTATCAAGCCAACGCTCCCAGGCTAGTGATCGGTGAAGA
ACATGTAGCCTCTACTCCTCTTCGATTATCATATACCATCGAAGATGTGT
CTGTTTGTAACCAGGATTTATGCGTCTTCGCTAAGATGGGTACTGGACAC
AAAGCCACAGCCAAAATCAGAGTCTTCCCAACGCGAGAAGAAGATGCCGC
TacgaaaataaaggaaaaattgCAACATGATTCCTTTGGAAATCAAGAAT
ATGATAATTTTTTGGAAGACGAAAAAGATTCGTCCAACCGAACCTCCAGA
GCTGC
Run BLAST on NCBI

transcript from alignment at sc0002439:13590..19026-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040471 ID=TCONS_00040471|Name=TCONS_00040471|organism=Clytia hemisphaerica|type=transcript|length=5437bp|location=Sequence derived from alignment at sc0002439:13590..19026- (Clytia hemisphaerica)
CAGTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAG
TAAGTTATTTTTGCTGTTCTCAACAAGTGAAATGAACTGTCTCCAACGTT
TTTACCTCAATTTTAACATTGTCAATAATTTTGAACTTCTAAATATCGAG
GGTACTGTAGTATTATTAATCACTGTTTGATTTTTCAACAGAATCTATCA
GATTTCTCTATACCAGCAGATACCAGCACTGTGTAACCAAATTCTAACCT
TTTCTTCGTCTTATTTGTGCTTTCAAGGAAGCGTTGAAAGAGTTACGGCA
AAAGACGGCAGGTTATATGCGAACGAATGAAGATGACTTTCTTCCTTTCA
CCTCCAACACGAATACCGGTGACATGCTTAGCACTGGTGAGTTTTCAATG
GTTGTTGACTGTTAGAAAGTTTTTTGAAATTACTGACCTATCAAAGGTTC
CTATACCAATAAAATATTTTGAAGAATCAAACTGGTTCTTATTTTTGGAC
CTACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AACGCTATATTTTCTGACTGATTTTTTTCATTTTTCTTTTCGCATTGCTA
TCTAACTTTAATCATCAGGTAGGTCCATTCAGCATATTGCTTGTTATATT
TAAAGCTTTTAAAAAGGAAACGGTGAAAATCACGATTAAAAGCTTTCGCA
ACGCTCTCTTTTCGGTACTCCTAAAATAGAGTGCACCGCCAGAAACGACG
GCCGATTTCAAACCACTATGAATCTTTTTCGACACTTTGAATAATTTTGT
TTTTGTTACAGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTA
CCACGTGGGGTGGTCAACTAGAGGTATGTTATTTCATTGTAAAGCTCATA
TCCGGGGGGAGGGGGGCTACTCGATTTCGAAATGACGGTATGTGCTTTTC
AAAATCTGCTTTTCAAAATCTGCTTTTCAAAATCGTACCCTTACAGTGCA
GTTCAATATGGCTGAACAGGTACCCTTTCAGTGCATTTTCTCATGATTTA
CCCAACCCTTATAGTGCACTATATTTTTCAGTTGTAAATCTGCATGAAAA
AAGAAGCTTGGGAAATTTTCTGTTTCAAAGAAAAACTCAGAAAATTATTT
TTGTCAGCTGTAATTATCAGACAATAGAAACTTTTTCAAACAAACGAGAA
GTAAAAACCTTTATTTTTATCAGTTATTTTGAATTTGTTTTAATTCGACT
CTTGCAGTGCTATCTGACAGAAACACACCCTTACAGTGCATTTTGGGATG
CTGAAAAACCCGGTACATGACGTAAGCCAGATCATATGAGTGCCCCCCTC
CCCCTGGGGCTCATATATCTGAGGTTTCGCTGTTATCTTTTTACTGCTGG
CCAGAGTAACTGACATTGCTTCTCAAAGAATCAGTATATTACTGCTAGTA
TGAAAAGCTCGAAAAGGTTTCGAAAAAGAAATGTCCTCCTCTTTACAGAT
TCGTGCGATATCGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGCCA
ACGCTCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTT
CGATTATCGTAAGTTGCCTTTTTGATGTAAACTCTGATTTTAATTATCGC
CAAAAACCAAAGACCCCACACTGATAAAGTTTATAAAGCCTCTGACATTG
CAATTTAATCTTTGACCTAGAAAGCCTTATGCTTAATATCTGGAATATGC
TCAGTCAGAGGCGTAACCACGGGTTTTCGTTTCGGGGGATGAGATTGGAA
AATTTTTGACCTTTTTAGGGGGAATTTTTGGAGAAGATTTTTCTCGTAAC
TTATGCTCCGCGGGCGTCAATTGCTGCTCTAAGAAATCTCAAGTTGCTTG
AAAAAGAGGCATCTGAAGGTCAATGTTAGCGAGAGTAAGATCACAAAAAG
TGCGGAAAAACTTAAAATTTCATGTCGCAGAGAGTTTTCTTTGTAATCTT
GGCGCCGCAGGCAAAAAGAAAATAGCTAACCAGGCGGACCACAGGGAGGC
TTTTATTTAAGATTTGGAATCCTAAAAGTGAAAATAACGCCATAGTAACA
GCAAAAAAGAAAAAAAAGCTGGAATTTGTCCACTGTTTGCTATTTATAGT
AACAGAAATTCTGTTTTTTTTCTTTGGTTGTTTCCAATAAGAAGAATGAC
GTAATCTTAACTTGTGCGAAATTCTCTCTTTCACCTTTGCAGGCAACTTG
AATGAATGCAACTTGAAATACATAATTTATTATCGCTATTTATAGAAATT
TTCGTAGAATTGACAGTTAGTGTGACAGATGCGATGTCGTTTGTTTTTGT
CAATAATTTATATACCCCTTACCTGTTGTTATCTCCTGTCCATTTTTAAG
TTCCAGAAAACTAATACAATTTTTTAAATCGCAACCATCCTCGTATGAGT
AAAAATAATATTTAATATAGTACCATGAATGACATTTCTATGAATTTTAT
CGATATAGAAAATTTAACTTAACTGGATTAACTGGATTTATGAATTTCGA
TGTCACATCAGAAAATGTTAATCAAATTTCAAACACTTTGTCTTGATAAC
ACGAAGTAGAAGCATTGTGTAAAGATAATATCGATGCAATGGCTTTTCTC
AGTGTTGTTGTTTTGACCTTATCGTTATTACTAAAGTTCGCTTCTACAAC
GGTGTTAGATACTCTATCGAACACTGTCAACAAAGGTGCAACTCTGGCTG
GAGAAAACATCGAATCTTTACTACCCGATGCCGAAGTTGCTTTAGCTGGA
TCCATCATTAATTACAGTAAATGGTCTCTCATCGAACGTGAATGGGAAAT
AGAATACGGAGATGTTGATATCCCTGCAGAGACTGTACACCCTGGGTACG
AGGAAGCTTTTGTTACGGAAAAAGATTCGGCTTTCTTCAAGCTTCATCAT
GGTGTTTCTGGCAAACTGTCATGGGAGGTCAAAACCTTTAATGAATCATA
CATAATTCATTTTATGTATGATATCCCCTATGATTTGGGGTTCAAGGAGC
ATAACCAACTGGCTATTGCTCTCTGCTCATCAAACGACAGCCTTTGCCGG
GAACTTTCCCGATCGGATTTGAAATCGAAGACGTACTCTTTCTCCAAACG
TCGGCTTTACAGATATACCATCGAAGATGTGTCTGTTTGTAACCAGGATT
TATGCGTCTTCGCTAAGATGGGTACTGGACACAAAGCCACAGCCAAAATC
AGAGTCTTCCCAACGCGAGAAGAAGATGCCGCTACGAAAATAAAGGAAAA
ATTGCAACATGATTCCTTTGGAAATCAAGAATATGATAATTTTTTGGAAG
ACGAAAAAGATTCGTCCAACCGAACCTCCAGAGCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024609XLOC_024609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040471-exon-sc0002439-1575043694:18978..19026TCONS_00040471-exon-sc0002439-1575043694:18978..19026Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1575043694:18641..18749TCONS_00040471-exon-sc0002439-1575043694:18641..18749Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1575043694:16104..16165TCONS_00040471-exon-sc0002439-1575043694:16104..16165Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1575043694:15369..15478TCONS_00040471-exon-sc0002439-1575043694:15369..15478Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1575043694:13590..13814TCONS_00040471-exon-sc0002439-1575043694:13590..13814Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1510915933:18978..19026TCONS_00040471-exon-sc0002439-1510915933:18978..19026Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1510915933:18641..18749TCONS_00040471-exon-sc0002439-1510915933:18641..18749Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1510915933:16104..16165TCONS_00040471-exon-sc0002439-1510915933:16104..16165Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1510915933:15369..15478TCONS_00040471-exon-sc0002439-1510915933:15369..15478Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1510915933:13590..13814TCONS_00040471-exon-sc0002439-1510915933:13590..13814Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1491911889:18978..19026TCONS_00040471-exon-sc0002439-1491911889:18978..19026Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1491911889:18641..18749TCONS_00040471-exon-sc0002439-1491911889:18641..18749Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1491911889:16104..16165TCONS_00040471-exon-sc0002439-1491911889:16104..16165Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1491911889:15369..15478TCONS_00040471-exon-sc0002439-1491911889:15369..15478Clytia hemisphaericaexon
TCONS_00040471-exon-sc0002439-1491911889:13590..13814TCONS_00040471-exon-sc0002439-1491911889:13590..13814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002439supercontigsc0002439:13590..19026 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.458262	0.955083	0.72043	1.14584	0	1.50061	0.846276	0	0	0	0	0.786023	0	2.33688	0.161186	0	0.857369	0	0	0.650658	0	0	0	0	2.59221	0.297831	0	0	0.627327	0
Blast
[Close]
BLAST of TCONS_00040471 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.223e-30
Identity = 48/90 (53.33%), Postives = 69/90 (76.67%), Query Frame = 2 
Query:   65 LRQKTAGYMRTNEDDFLPFTSNTNTGDMLSTEEYGKYCDDIENTTTWGGQLEIRAISNVYQQRVEIYQANAPRLVIGEEHVASTPLRLSY 334
            LR +TA YM+++ +DFLPF +N NTGDM + EE+ KYC+DI NT  WGGQLE+RA+S++ Q  +EI QA++P +++GEE+ +  PL L Y
Sbjct:  179 LRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEY-SKKPLILVY 267
The following BLAST results are available for this feature:
BLAST of TCONS_00040471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTU6B5.223e-3053.33OTU domain-containing protein 6B OS=Homo sapiens G... [more]
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