TCONS_00040467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040467
Unique NameTCONS_00040467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040467 ID=TCONS_00040467|Name=TCONS_00040467|organism=Clytia hemisphaerica|type=transcript|length=731bp
AAAGTACCTTGTAGGCTCGCAAATAGAAAATTAAGAACGTAGACAATTCA
ctctttaatttttcatttccatCTCGTTTTCTCTGATTTCAGTCTGTATA
ATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGAAGCGTTGAAA
GAGTTACGGCAAAAGACGGCAGGTTATATGCGAACGAATGAAGATGACTT
TCTTCCTTTCACCTCCAACACGAATACCGGTGACATGCTTAGCACTGAGG
AGTATGGGAAGTACTGTGATGACATAGAGAATACTACCACGTGGGGTGGT
CAACTAGAGATTCGTGCGATATCGAACGTGTATCAACAAAGAGTGGAGAT
TTATCAAGCCAACGCTCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCT
CTACTCCTCTTCGATTATCGTGAAATTCTCTTGACTTTGAGTTCACTTTC
ATTGCGTGGCTGTCTCACTGAATGTATGTACCATCTTGGATGTCTATCCG
TTAATTACATGAGAGAAGATTCTACTTGTGAAATCTTGGGGAACATAATC
CAAAGAAACATTGAACAACACGTGACCGTCTTAACCAATCAGACGGGTTG
GAATCATTTCGAAACAAATTATGACCGAAAAGCTaTTGGAATCACTTGTT
CCCGAAGTAATCCATGCCCATCGGATAAACGTTGTGTTGATAATTGTGAT
GGCTTGGCTTCTTGCGTCCCTCTTACAGTCG
Run BLAST on NCBI

transcript from alignment at sc0002439:11068..19115-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040467 ID=TCONS_00040467|Name=TCONS_00040467|organism=Clytia hemisphaerica|type=transcript|length=8048bp|location=Sequence derived from alignment at sc0002439:11068..19115- (Clytia hemisphaerica)
AAAGTACCTTGTAGGCTCGCAAATAGAAAATTAAGAACGTAGACAATTCA
CTCTTTAATTTTTCATTTCCATCTCGTTTTCTCTGATTTCAGTCTGTATA
ATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGTAAGTTATTTT
TGCTGTTCTCAACAAGTGAAATGAACTGTCTCCAACGTTTTTACCTCAAT
TTTAACATTGTCAATAATTTTGAACTTCTAAATATCGAGGGTACTGTAGT
ATTATTAATCACTGTTTGATTTTTCAACAGAATCTATCAGATTTCTCTAT
ACCAGCAGATACCAGCACTGTGTAACCAAATTCTAACCTTTTCTTCGTCT
TATTTGTGCTTTCAAGGAAGCGTTGAAAGAGTTACGGCAAAAGACGGCAG
GTTATATGCGAACGAATGAAGATGACTTTCTTCCTTTCACCTCCAACACG
AATACCGGTGACATGCTTAGCACTGGTGAGTTTTCAATGGTTGTTGACTG
TTAGAAAGTTTTTTGAAATTACTGACCTATCAAAGGTTCCTATACCAATA
AAATATTTTGAAGAATCAAACTGGTTCTTATTTTTGGACCTACCTCNNNN
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TTCTGACTGATTTTTTTCATTTTTCTTTTCGCATTGCTATCTAACTTTAA
TCATCAGGTAGGTCCATTCAGCATATTGCTTGTTATATTTAAAGCTTTTA
AAAAGGAAACGGTGAAAATCACGATTAAAAGCTTTCGCAACGCTCTCTTT
TCGGTACTCCTAAAATAGAGTGCACCGCCAGAAACGACGGCCGATTTCAA
ACCACTATGAATCTTTTTCGACACTTTGAATAATTTTGTTTTTGTTACAG
AGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTACCACGTGGGGT
GGTCAACTAGAGGTATGTTATTTCATTGTAAAGCTCATATCCGGGGGGAG
GGGGGCTACTCGATTTCGAAATGACGGTATGTGCTTTTCAAAATCTGCTT
TTCAAAATCTGCTTTTCAAAATCGTACCCTTACAGTGCAGTTCAATATGG
CTGAACAGGTACCCTTTCAGTGCATTTTCTCATGATTTACCCAACCCTTA
TAGTGCACTATATTTTTCAGTTGTAAATCTGCATGAAAAAAGAAGCTTGG
GAAATTTTCTGTTTCAAAGAAAAACTCAGAAAATTATTTTTGTCAGCTGT
AATTATCAGACAATAGAAACTTTTTCAAACAAACGAGAAGTAAAAACCTT
TATTTTTATCAGTTATTTTGAATTTGTTTTAATTCGACTCTTGCAGTGCT
ATCTGACAGAAACACACCCTTACAGTGCATTTTGGGATGCTGAAAAACCC
GGTACATGACGTAAGCCAGATCATATGAGTGCCCCCCTCCCCCTGGGGCT
CATATATCTGAGGTTTCGCTGTTATCTTTTTACTGCTGGCCAGAGTAACT
GACATTGCTTCTCAAAGAATCAGTATATTACTGCTAGTATGAAAAGCTCG
AAAAGGTTTCGAAAAAGAAATGTCCTCCTCTTTACAGATTCGTGCGATAT
CGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGCCAACGCTCCCAGG
CTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTTCGATTATCGTA
AGTTGCCTTTTTGATGTAAACTCTGATTTTAATTATCGCCAAAAACCAAA
GACCCCACACTGATAAAGTTTATAAAGCCTCTGACATTGCAATTTAATCT
TTGACCTAGAAAGCCTTATGCTTAATATCTGGAATATGCTCAGTCAGAGG
CGTAACCACGGGTTTTCGTTTCGGGGGATGAGATTGGAAAATTTTTGACC
TTTTTAGGGGGAATTTTTGGAGAAGATTTTTCTCGTAACTTATGCTCCGC
GGGCGTCAATTGCTGCTCTAAGAAATCTCAAGTTGCTTGAAAAAGAGGCA
TCTGAAGGTCAATGTTAGCGAGAGTAAGATCACAAAAAGTGCGGAAAAAC
TTAAAATTTCATGTCGCAGAGAGTTTTCTTTGTAATCTTGGCGCCGCAGG
CAAAAAGAAAATAGCTAACCAGGCGGACCACAGGGAGGCTTTTATTTAAG
ATTTGGAATCCTAAAAGTGAAAATAACGCCATAGTAACAGCAAAAAAGAA
AAAAAAGCTGGAATTTGTCCACTGTTTGCTATTTATAGTAACAGAAATTC
TGTTTTTTTTCTTTGGTTGTTTCCAATAAGAAGAATGACGTAATCTTAAC
TTGTGCGAAATTCTCTCTTTCACCTTTGCAGGCAACTTGAATGAATGCAA
CTTGAAATACATAATTTATTATCGCTATTTATAGAAATTTTCGTAGAATT
GACAGTTAGTGTGACAGATGCGATGTCGTTTGTTTTTGTCAATAATTTAT
ATACCCCTTACCTGTTGTTATCTCCTGTCCATTTTTAAGTTCCAGAAAAC
TAATACAATTTTTTAAATCGCAACCATCCTCGTATGAGTAAAAATAATAT
TTAATATAGTACCATGAATGACATTTCTATGAATTTTATCGATATAGAAA
ATTTAACTTAACTGGATTAACTGGATTTATGAATTTCGATGTCACATCAG
AAAATGTTAATCAAATTTCAAACACTTTGTCTTGATAACACGAAGTAGAA
GCATTGTGTAAAGATAATATCGATGCAATGGCTTTTCTCAGTGTTGTTGT
TTTGACCTTATCGTTATTACTAAAGTTCGCTTCTACAACGGTGTTAGATA
CTCTATCGAACACTGTCAACAAAGGTGCAACTCTGGCTGGAGAAAACATC
GAATCTTTACTACCCGATGCCGAAGTTGCTTTAGCTGGATCCATCATTAA
TTACAGTAAATGGTCTCTCATCGAACGTGAATGGGAAATAGAATACGGAG
ATGTTGATATCCCTGCAGAGACTGTACACCCTGGGTACGAGGAAGCTTTT
GTTACGGAAAAAGATTCGGCTTTCTTCAAGCTTCATCATGGTGTTTCTGG
CAAACTGTCATGGGAGGTCAAAACCTTTAATGAATCATACATAATTCATT
TTATGTATGATATCCCCTATGATTTGGGGTTCAAGGAGCATAACCAACTG
GCTATTGCTCTCTGCTCATCAAACGACAGCCTTTGCCGGGAACTTTCCCG
ATCGGATTTGAAATCGAAGACGTACTCTTTCTCCAAACGTCGGCTTTACA
GATATACCATCGAAGATGTGTCTGTTTGTAACCAGGATTTATGCGTCTTC
GCTAAGATGGGTACTGGACACAAAGCCACAGCCAAAATCAGAGTCTTCCC
AACGCGAGAAGAAGATGCCGCTACGAAAATAAAGGAAAAATTGCAACATG
ATTCCTTTGGAAATCAAGAATATGATAATTTTTTGGAAGACGAAAAAGAT
TCGTCCAACCGAACCTCCAGAGCTGCTTTTCTCCAATTATATTCATTCTT
CACGATTGTTGTTGTCACCCTCGCATATGTTGGGCTGGTGTAACTTGACG
ATCTTATCGGATGTTATTTCTAACCTGAAGAACCTTTTTTTTAAATTTAG
CAGACACAAACTTGAACAGTGAAAAATGGCACTTTGAAAAACCTTTGTGA
CTGATTGAAAACTAGCCATTACAACAGCATAATGAAAAATATACAGTCAA
GCTTGGAAAACAATCTTAAGTTTTTTTTAATTTCTGTTATTATGATTTTA
TTACCACCTTTTTTGAATTTTATTTTCCGAAGTATCGCGCACATTTTTTT
CTATATCAAAATTTTGTTCTTTTTTCTACGGTATTTATTGATGGGAGTTG
CTGATGATTCTTGGTGATTCTGGTTTTAGGTGTAATAGACAGACCCTATG
AAAGACCCTTCATTCTTGAATATAATATAAATATTTTATGAAGACTAGAA
ACCCTTGAAAATATATTCCAAGAACCCTGTTAACCATTGACACCCTTGCT
ATATAGGGCTCTTTGTATAAAAGTTAATATTTGTGTCACATTTTATTTTG
TGTCTATTTTACGTGATTTTCAATGAAATATTTACGATATTTTAAGAAAT
GTTTGTTTCAAATTTTATTCAAAAAAGATAAATTTCCATTTTCATTCCAC
GTACAAACAACCGATTGAATTTTTATAAAAATAAGGTTTACTGAAATATA
TCGCCTGGCAACTAAACTGACTTGAAAGAAATATTGATTGGTTTAGTCCC
TTTTTCATTTAGTATTCAACTCGAGTATTTTTCAAAAATTAATTGATTGA
TCGAAGTTTCTTTGACTCGTCATTTTCGATGTTTTTTGTAAAAGAAACCT
CTTTACAATGAAGTTGGCACTGAAAATTGCGTTTTGTTTTACCATTTTCT
GCCTAAGTTTCACCTTTTCGCATGTTTTCCAATTAAAACAGTGCAATAAT
TTTGATGCAGAATTTTCCAAAGTCACTTATGGTCAACGGCTTTTAGGTGA
AATTCTCTTGACTTTGAGTTCACTTTCATTGCGTGGCTGTCTCACTGAAT
GTATGTACCATCTTGGATGTCTATCCGTTAATTACATGAGAGAAGATTCT
ACTTGTGAAATCTTGGGGAACATAATCCAAAGAAACATTGAACAACACGT
GACCGTCTTAACCAATCAGACGGGTTGGAATCATTTCGAAACAAATTATG
ACCGAAAAGCTGTAAGTTATCAATATCATTCATTCACTTTTGAACTTTTA
GTGGTCCGAATTTCAAAATTTGAGCTTTCAAAAGCCTCCATTTGAGCTTT
CAAGAGCCTCCATTTGAGCGGTGTACTAAAGTCTTTTGTTGGACCTGAAT
CGAGGTTTTGCAGTTGACTTTTCGTAGCTTAAACATCATTATATAAACTC
TTTATTCTATTTTGTTTTTTAGATTGGAATCACTTGTTCCCGAAGTAATC
CATGCCCATCGGATAAACGTTGTGTTGATAATTGTGATGGCTTGGCTTCT
TGCGTCCCTCTTACAGTCGGTAAGACATCGGAGTATCCAATAAGCGACCA
TTCTGAAAACTAATCTTCCTTCCTTCTCTTCACTATTTAGGCGCCATTGC
TTTTTTGGACCTACCTCGGAGGTCCTTTAAATTAATGTTCGTCCGTCCGT
CCGTCCGTCCGTTCGTTCGTTCGTCTGTTACCAGTTTTTCTCGGGATTGG
CTCATTACTTTATTCTGTTTTTTGGCGCAATGATGCAAAATGATGATTCC
TAAAAAGTGAGGGAGCCCGATTTTCGAAAAAAATTTTCCGGTCGTATGCC
GGAAAACTGTNTTTTTGTAAAAGAAACCTCTTTACAATGAAGTTGGCACT
GAAAATTGCGTTTTGTTTTACCATTTTCTGCCTAAGTTTCACCTTTTCGC
ATGTTTTCCAATTAAAACAGTGCAATAATTTTGATGCAGAATTTTCCAAA
GTCACTTATGGTCAACGGCTTTTAGGTGAAATTCTCTTGACTTTGAGTTC
ACTCTCATTGCGTGGCTGTCTCACTGAATGTATGTACCATCTTGGATGTC
TATCCGTTAATTACATGAGAGAGGATTCTACTTGTGAAATCTTGGGGAAC
ATAATCCAAAGAAACATTGAACAACACGTGACCGTCTTAACCAATCAGAC
GGGTTGGAATCATTTCGAAACAAATTATGACCGAAAAGCTGTAAGTTATC
AATATCATTCATTCACTTTTGAACTTTTAGTGGTCCGAATTTCAAAATTT
GAGCTTTCAAAAGCCTCCATTTGAGCTTTCAAGAGCCTCCATTTGAGCGG
TGTACTAAAGTCTTTTGTTGGACCTGAATCGAGGTTTTGCAGTTGACTTT
TCGTAGCTTAAACATCATTATATAAACTCTTTATTCTATTTTGTTTTTTA
GATTGGAATCACTTGTTCCCGAAGTAATCCATGCCCATCGGATAAACGTT
GTGTTGATAATTGTGATGGCTTGGCTTCTTGCGTCCCTCTTACAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024609XLOC_024609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040467-exon-sc0002439-1575043694:18978..19115TCONS_00040467-exon-sc0002439-1575043694:18978..19115Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1575043694:18641..18749TCONS_00040467-exon-sc0002439-1575043694:18641..18749Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1575043694:16104..16165TCONS_00040467-exon-sc0002439-1575043694:16104..16165Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1575043694:15369..15478TCONS_00040467-exon-sc0002439-1575043694:15369..15478Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1575043694:12355..12569TCONS_00040467-exon-sc0002439-1575043694:12355..12569Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1575043694:11068..11164TCONS_00040467-exon-sc0002439-1575043694:11068..11164Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1510915933:18978..19115TCONS_00040467-exon-sc0002439-1510915933:18978..19115Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1510915933:18641..18749TCONS_00040467-exon-sc0002439-1510915933:18641..18749Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1510915933:16104..16165TCONS_00040467-exon-sc0002439-1510915933:16104..16165Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1510915933:15369..15478TCONS_00040467-exon-sc0002439-1510915933:15369..15478Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1510915933:12355..12569TCONS_00040467-exon-sc0002439-1510915933:12355..12569Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1510915933:11068..11164TCONS_00040467-exon-sc0002439-1510915933:11068..11164Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1491911889:18978..19115TCONS_00040467-exon-sc0002439-1491911889:18978..19115Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1491911889:18641..18749TCONS_00040467-exon-sc0002439-1491911889:18641..18749Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1491911889:16104..16165TCONS_00040467-exon-sc0002439-1491911889:16104..16165Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1491911889:15369..15478TCONS_00040467-exon-sc0002439-1491911889:15369..15478Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1491911889:12355..12569TCONS_00040467-exon-sc0002439-1491911889:12355..12569Clytia hemisphaericaexon
TCONS_00040467-exon-sc0002439-1491911889:11068..11164TCONS_00040467-exon-sc0002439-1491911889:11068..11164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002439supercontigsc0002439:11068..19115 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.643689	1.35059	0.727596	1.57628	5.91981	3.44213	3.20876	3.12601	1.96443	1.05181	1.92864	1.92464	0.22911	0	1.42932	1.20117	1.47191	2.23193	1.39003	1.98981	2.04029	2.24696	2.21882	1.04126	4.27421	4.79825	1.09342	0.870428	0.360478	0
Blast
[Close]
BLAST of TCONS_00040467 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.808e-28
Identity = 47/88 (53.41%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:  154 LRQKTAGYMRTNEDDFLPFTSNTNTGDMLSTEEYGKYCDDIENTTTWGGQLEIRAISNVYQQRVEIYQANAPRLVIGEEHVASTPLRL 417
            LR +TA YM+++ +DFLPF +N NTGDM + EE+ KYC+DI NT  WGGQLE+RA+S++ Q  +EI QA++P +++GEE+ +  PL L
Sbjct:  179 LRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEY-SKKPLIL 265
The following BLAST results are available for this feature:
BLAST of TCONS_00040467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTU6B3.808e-2853.41OTU domain-containing protein 6B OS=Homo sapiens G... [more]
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