XLOC_025753 (gene) - C. hemisphaerica

Overview
NameXLOC_025753
Unique NameXLOC_025753
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0003049:7295..14771+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_025753 ID=XLOC_025753|Name=XLOC_025753|organism=Clytia hemisphaerica|type=gene|length=7477bp|location=Sequence derived from alignment at sc0003049:7295..14771+ (Clytia hemisphaerica)
TTTTTATTGAATTCGAAATAATGTAAAACGTACATTTAGGTTAAGCGGTA
CCATTATCCTTTTAAAACGAATTCAATTTCTTTTTTTAACACTATTAAAG
GGATTATACAGTGTTATATACACCCGACTCGTCTGAAACTGATGTCAGCA
AAATTTTAATAAAAGATTCCTTTCAAATTTGTAAATAAAAGGAAGAAAAA
AAtcttgctccacatttttctttattcattacaaaagattctatttattt
caatctgctgaatcaacatacattatgactatgtaaaaggtcaatggctt
taacgaaaaaacctttttcaccTAGGACccattttatgatattttttttt
gaaatggtAAGATGGAAACAAGCGAAGAtaagaataaaaatttgatgGCA
GCAAAAGTAAGTTAATCTTTTATTATTACGTTTTTATGCCCGGCAATTAA
CTATCTATCTGATGCCTTCTTTCGTATAGTTTAGCATAGTTTAGTAGAAT
TTAGAATTTATCCCGTATGAATTCTCAAATTTCTAATATATACAGAGAAA
AACATCCCAAGCGAGATCGAACCAAACAGAAAAGTTTCAATGAATCGTAT
AAATTTTAGtaaagattttaaagattataGAGAAAAATTGCTTaacaatt
gaaaaaaatgtaagattACTTTGGGTAATTTTCTGTTTTATTCAACCTTC
TAGATACCTCGGAAGAAGCAGAGACTGAATATCGAAAAAGTTGCGAATGA
TTTAGAAGAATTTAAACAGAACAGTTGCtgtgaaagaaaatgtcacgaAG
GCTTTTCTGCGTTTCAAGTGACTAGAATAAGGGAGCAATTCTGGGAGAAA
GACGAAGAGCAACAAAATACGTTTATCATAAACTTTTTGAGATCGCAAAG
ATTTTCTCACGCTTTGGTGTTTCATATTGATCGAGTTGTCTGccaaaaat
tttggtttttttgttATGGCATATCAAAGTCTAGGTAACTTTcccatttt
atatttttaaagtgaaatatttttataagaaaagtgtttttttgGTTTCA
TGATANTCTTTACTTgaggatttttttatgaaatttgactttgaaaagAT
TTAAGATAACATTATTCTTAGGACATTCTTAACTTTtaggccaatttcat
catgaatattcttataaagtatattcttataaaaaaagcgtgtataaagC
TTTAACATGCCTCGTTTCAATCTTATCGATTTTCCATTACGGTTACTCTT
TTTAGATTCTATCGAAAACGCAATGCCCTTCTAAAAGGCCACAAAGATGG
GGCAACAGAGCGAAAGGGAGCAAAACAATGCAGCAGCGAATATGTAAGta
ttgcagatttttcagatttcgtTATTATCATTGTTGCATGTTGTTGTTTT
AGCTACTAAGAGAAAAGGTCCTTTCCCATGTTCTATTTtacaaagaaatt
tattttatgcATTTTAGCATCATGCTGTTTTATGGATAAAGCGATTCGCT
GATGATTGTGGAGATGCTCCGCCGGACCGGGATCCTGATTCTCGGGTCAT
CCCAGCCTGTTTTACCAAAAGAGCTGTTTACAAGACATATAAAGAAGAAA
TTCAATTACAGGTTATTCAAAATGGAATTAAATCTATCATTCAAACAAGT
TTCTTTAAAGCTTGTTCCTCACTTGTTGAAAAANAAATTACAGGTTATTC
AAAATGGAATTAAATCTATCATTCAAACAAGTGTCTTTAAAGCCTGTTCC
TCACTTGTTGAAAAAATCTAACATTAGACGCGGATATTTAATTCTGTTCA
CATTGCGGTGCCTTTGAACTTTAGATGCGCGGAACAAATAAAGGAATAAA
TCTCTAGGGAGTCTCGTTCAAactctacacgcttttttataagagcagtt
cttaataaaaaaaacgtgtattcaatttttctctGCGTCCTTTCTGCCAT
GAATATAGCTTTATTTTTGCACCTATCCTGCTTTGTTTTGCCAGTTTAAT
TAAAGTTTCAAGTTGAAAATTAATCAgcaaattttaaaagatttcagaGG
TTTccggatttttttaattttctattgttATCTTGAATCTGCCACGACCT
TGTGACGTTAAACTGTGTTGTTGGAACAATCACAGTATTCCTTATTATGG
GATAATAGAGGGGGCAGCTGTGAATTTCAAGCAAAAGCAATTTTTGCCTC
TATTCTTTAGTCTATAGTCCTTCTGTTATGATCATAAATCATAATTAATC
AAATATAACTTTAATACTTTTCATCCAAAAGAACACGAGATTCACGAAGT
GTGGCATATGCACCCTAATCAAAGACATAAAAAATTCAACCAAAGACAAG
GATTTGAAAAATAAAATGTCCTTAATACGAAAATTGCATAACGAACAACA
AATGTAAGTTGGTTGATTTATGTTTGTAAAATGCAAGCACTTTCTTtgtt
ataaaatgaaaatccttAGCTGTTCATAATGTCTAGACAGCCTTTCCAGC
AGAGACACGGTGTATCAgtcgaaagcagccggcgaggcgacctttttttt
cgatgtgttctgagagtatatttcagctagaaattttgatctgttctgat
cagaacttcgaaaattaatcagctagaagtaatgatgtgttctgatgaga
caggggtataatcaaattcatctaacgtgttcttgttgtctagataaccc
tagaaagcttcagaacacatcttttaaggagacaggggtataaccaagaa
aaaatttatgtAATCTTGTTacctagtaaccctagaaattttcagaacac
atctttcgtagagaaaaacaaatatctttcaggtttatcttggcaaactg
tttttcctagattttagaacacatcaaaccataaagtaatgataagttta
gggagacaaatagtgtgataaaggtttcctagaaataagaacacgtcatt
tataaaaagaattgaaaggtcataacatttggtctcctagaaaataagaa
cacatatttctaaaaaatctctccgccggctgcttctgtatCAGTAAACA
AGATTGTACTAAGAATATAATTAATacgaaaaatatatcattttgagcat
gaaattttgagagTGAACAACAGGAATTATTCCTGTTTACACCAATACAA
TTTTTGTATCCTTAGGGGTGAAAGAGCAAAATACAAGGTCCATCAGACTA
AAGCCAGAAATAATCCTGATCGATACGCCAGTATTATCATCGATGGAATG
GATCAGAACAAAACATCTCTGCCTCATTTTTTCACCCTTTCTAAGGTCTG
TTttacactttttgataaaagatcaGTTTAACCAAATCTGACTCGAGAGT
ACAaacatacacccctgtctcagtgtcAGTGTgggatattttttttatat
ctaaCGGGGTTATCAAAAACGGACTTTTTCCACTGGGGATACGAAATTAT
GATTGTTCTTTGTTCGAAATATTGGTGGGGATGAGAAATTTAAGTAGATC
AAAGtttagtgggaatataaagatttttacgtttttcaatGGGGAATTTC
TATACTATTTTTACACTGGGACGACTTTTAGTAGAAGTCGGAAAATTACC
ACCCTTAAAACATCTGTAATTaaagaaatacacgtttttttttNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTCCTTTgtctttgtttgaaaaataaata
gcaATTCAATAGGAAATTTAAAGAGAAAGATTTAAAATGGAAtagatttc
taaaaaagaaataaacgtAGTTAGTTATGCTCCAAATAATGGACCTTTGT
CGTTTCAAAACTGCTTTTTGTGTGAAGTCATTCCCTTCATCAATAGAATA
AACAGGTTTTTGTTCAAGTAGGATTTCAAAAGAATTAACATAACACAATT
TATCTGCCCTTCATGGTAAACAATTTATTTTCGATGTTAAGAAACAGGTG
TTCTTCACTAATCCTCTAGAAAAAcgaaacaaaataatcataaaaGGTAT
ATGATATTGTTATGTAACATTTTGTAAAGCAAAAAAATGGATACCATAAA
AATCGCTTATCTTCACTTTAGAGTTTTTGGCTATCAAGCTTTCAATCTTT
CATTTCTGTGTGTCGGTTTCTTTTGTACATTGGAGTTTGGAAAGCAAAAT
AAGtaaagtattttttatttaaaacaatGGTATTTCCCAATGATCTTTTC
GGACTTTAATGAGATATTTACTTCTCGTTTCATTCAGGATGGAGTTCTTC
CACCAGTTCTTTATGTACAAATGGATAATTGCTGGAGAGAgaataaaaat
cagtttttattAGCCTTTTTTGCGTTTTTGGTGTTAAAAAGAATCGTTAA
AAAGGTATATAAATACAACAATACTCATCAAGACTTGAATATAGTTTAAT
TAATTAATGCCTAATtaatgaagaaaagaaaaccAATTACTATAAAATTA
CTGTAAAAAGTTACAGTCGGCAAATGGTACCGAAATGATATCAACATTTT
AGTTTCTGCTCGTAAATTCTTAAAACGCACCGTTTATACCAATTTAAACT
TATGCATAAAATGTTCTTGAGCAAATAAAAAGATGATGTGTTACAAAAGA
ATGTATCCTTTGGttgaatgaaaataaacatATTGATTCGACATTAGGTT
CGTCTTTCTTACTTGCTTGTTGGACATACCCACGAAGATATCGATAGTGT
aaggaaattattttcataatttttcctCTTCAtcaatttgttttaatttt
cttccaaaatagAAAAGACTTTTGCATTTGTCGATTTAAGTTATAGGCGA
TGGACGTACAAAACTTAATctctttttatacatttttaatCTTATCAGAC
ATTCAGTAACATTTCAACGACCTTAAACAAGAAAGACGTATTCACAATTG
ATCACCTGCTTCAAACGATTAAGGAATCCTTTCAGAAACAAAACACGAGT
GTTTCTTTACTGAAATATGTATTCAATTACCGGGACTGGTTTATGCCCAA
CATAAGAACACCGTCTCATCACACTGAGCCGCACGCTTACAAGTTTGAGC
TAGTCAACGAGGAAGTTGACTTGTCTTTTAAACGTTTCGCAATGGATCCA
GAATGGACCCAACTCAAGCCAGCACTCCTTTCGCATCTACCAACTGGACC
CATTCCCTTGGTACGGTTTAGTTGGAGAAAACAACTTCCAGTAGAcgaga
ttgaagaaaaaatacaaTCTTGCTCTGTGAAATTGCCCCATCAATCAATG
ATATGGTGGGGTAATTTCACCGACAATCTACGAAAGGAACAAATGTAAGA
GTCTCCTTTCTTCAAAAGTATGGAAAATTGAGCTAAAAACAGTATTTATC
AGTCTAAACTCGTAAACTCGAAATTTTTAGTCAATGATTCCCGTTCTGGT
cgattttattgttttaaaaagcacgtgtttccatttttttaattgaaatc
aatttttggaatcAATTCTTTTCCAAGGAAATGGAGTGAAGCCAGTGCTG
CAACTCTGATATCAGATGGTGGATGCTTTTTGAGTTATTTGAAACCTTAC
GCAGATGTTGTGCCGTTCTCAAAAGTATGTGCATAAACATTTTAATGtat
ctttttcaaaagtaaagaaaagagaagaaaatttaatagaattcatttaa
attttaatcaaatatCTCTTAGATGTCAGAGGACGACGCAAGGAGAAACG
AGCATATAGATATGCTCATGGAAAAGTCACAAAGGACTCCGCGTGTAAGG
ATTTGATTAAAGAATTATTTGTAATAAAGCAATTATGTTATCTCTAATTG
AATAGAAAAGTAGAAGAAGAATAAGTGTATTTCAATtgaatttatttcaa
ttttagacGGCGATTTCAAAGCATTCCGAGCGCGAGAagccaaagaaaaa
gaagaagaaaaatcccACTGAAACGGCAAACGAAAACAAAACGAACAAAa
cgaacaaaaagaaaaaaaacaatgaaacggCAAAcgcaaacaaaacaaac
aaaaagaaaaacaacaaaaacgaaaAGGATCCGCTCTCAAAAGCAAAGGC
ACGGGTCAAGGCAAAAAGGGCTTTAAAAGTCAAGTCCAGAAATGTAATAG
CCGGAAAAGGAGCAGAAAAAAACGTTATGAATGTTAGCTTATGAAATATG
TTGCacgtttttatttcaaaggaaCCATGAAATATGGAATGAACCTCGAC
TGTTctacattttctcaaaatttcctatCCATCACAAGCTCGGAATGAAT
TTCCACCAAAGCTGTATCATCTTTTTCTATATcgataaaaaggaaaaata
aaacagaaaactTTTACATGTTTTAACCTCGGTactattcttaaattgtt
ctaatTTTTTGCNTCTTGGGCATTATGatatttagtgacgtggtggtata
accaagaaacttaaaaatccttttagtaccacgacgtactaaaataccaa
aaaggcgGTATCCAGACTAAAAAATCAgaacttttgagaaaaatggtcta
gagaagaaaaaaattgtcctcaGAAGACCAAAATTGGGTGGTCTCTGTGC
CAAAACATCCccaaaaattttattacatgggcAATAAAAGACCATTCCTC
CAAAATGGGGTGATAGTATGCAAAAGATTCTCGAGAACCCTTCTAGTACT
CacatatgtctgagattttggtactgacccccccccctgtttccGCTGGA
ATTCGAATCGGCGAAAGTTAACTGTATATTGGTCAAACTTTTTACACTTT
TAGCATGCTTGGATTCGAAATACAGAAGTACAGTACAGAGAAAGTTCTAC
GGATACTCTTACTGCATGGTTCATTTTAAAATAGTGATTGAAAGATTATG
ATTTAAATTATATTTGGCCCTAGAGGGGGATTAGAGATATGTTAATCCTA
ACCCTAAATTACAAGCTATCATGTTATCAGAGATCTAGAAAAGAAGATTC
CCTGAGTCTGCCCAAGTTATCGAGGCCATGTGCCCATATACTCTTATGGT
AAGTTCCCAAAAATCATGGAAATTTTC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00041847TCONS_00041847Clytia hemisphaericatranscript
TCONS_00041848TCONS_00041848Clytia hemisphaericatranscript
TCONS_00041849TCONS_00041849Clytia hemisphaericatranscript
TCONS_00041850TCONS_00041850Clytia hemisphaericatranscript
TCONS_00041851TCONS_00041851Clytia hemisphaericatranscript
TCONS_00041852TCONS_00041852Clytia hemisphaericatranscript
TCONS_00041853TCONS_00041853Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00041853-proteinTCONS_00041853-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003049supercontigsc0003049:7295..14771 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.73	1.16	0.79	0.89	3.16	3.01	3.52	3.97	2.99	3.18	2.82	2.51	1.98	1.96	2.77	3.44	2.69	4.11	2.09	3.06	3.42	3.5	1.31	2.8	1.77	2.47	1.5	1.24	1.99	1.51