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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041852 ID=TCONS_00041852|Name=TCONS_00041852|organism=Clytia hemisphaerica|type=transcript|length=2712bp
TTTgtctttgtttgaaaaataaatagcaATTCAATAGGAAATTTAAAGAG
AAAGATTTAAAATGGAAtagatttctaaaaaagaaataaacgtAGTTAGT
TATGCTCCAAATAATGGACCTTTGTCGTTTCAAAACTGCTTTTTGTGTGA
AGTCATTCCCTTCATCAATAGAATAAACAGGTTTTTGTTCAAGTAGGATT
TCAAAAGAATTAACATAACACAATTTATCTGCCCTTCATGGTAAACAATT
TATTTTCGATGTTAAGAAACAGGTGTTCTTCACTAATCCTCTAGAAAAAc
gaaacaaaataatcataaaaGGTATATGATATTGTTATGTAACATTTTGT
AAAGCAAAAAAATGGATACCATAAAAATCGCTTATCTTCACTTTAGAGTT
TTTGGCTATCAAGCTTTCAATCTTTCATTTCTGTGTGTCGGTTTCTTTTG
TACATTGGAGTTTGGAAAGCAAAATAAGtaaagtattttttatttaaaac
aatGGTATTTCCCAATGATCTTTTCGGACTTTAATGAGATATTTACTTCT
CGTTTCATTCAGGATGGAGTTCTTCCACCAGTTCTTTATGTACAAATGGA
TAATTGCTGGAGAGAgaataaaaatcagtttttattAGCCTTTTTTGCGT
TTTTGGTGTTAAAAAGAATCGTTAAAAAGGTATATAAATACAACAATACT
CATCAAGACTTGAATATAGTTTAATTAATTAATGCCTAATtaatgaagaa
aagaaaaccAATTACTATAAAATTACTGTAAAAAGTTACAGTCGGCAAAT
GGTACCGAAATGATATCAACATTTTAGTTTCTGCTCGTAAATTCTTAAAA
CGCACCGTTTATACCAATTTAAACTTATGCATAAAATGTTCTTGAGCAAA
TAAAAAGATGATGTGTTACAAAAGAATGTATCCTTTGGttgaatgaaaat
aaacatATTGATTCGACATTAGGTTCGTCTTTCTTACTTGCTTGTTGGAC
ATACCCACGAAGATATCGATAGTACATTCAGTAACATTTCAACGACCTTA
AACAAGAAAGACGTATTCACAATTGATCACCTGCTTCAAACGATTAAGGA
ATCCTTTCAGAAACAAAACACGAGTGTTTCTTTACTGAAATATGTATTCA
ATTACCGGGACTGGTTTATGCCCAACATAAGAACACCGTCTCATCACACT
GAGCCGCACGCTTACAAGTTTGAGCTAGTCAACGAGGAAGTTGACTTGTC
TTTTAAACGTTTCGCAATGGATCCAGAATGGACCCAACTCAAGCCAGCAC
TCCTTTCGCATCTACCAACTGGACCCATTCCCTTGGTACGGTTTAGTTGG
AGAAAACAACTTCCAGTAGAcgagattgaagaaaaaatacaaTCTTGCTC
TGTGAAATTGCCCCATCAATCAATGATATGGTGGGGTAATTTCACCGACA
ATCTACGAAAGGAACAAATATGTCAGAGGACGACGCAAGGAGAAACGAGC
ATATAGATATGCTCATGGAAAAGTCACAAAGGACTCCGCGTacGGCGATT
TCAAAGCATTCCGAGCGCGAGAagccaaagaaaaagaagaagaaaaatcc
cACTGAAACGGCAAACGAAAACAAAACGAACAAAacgaacaaaaagaaaa
aaaacaatgaaacggCAAAcgcaaacaaaacaaacaaaaagaaaaacaac
aaaaacgaaaAGGATCCGCTCTCAAAAGCAAAGGCACGGGTCAAGGCAAA
AAGGGCTTTAAAAGTCAAGTCCAGAAATGTAATAGCCGGAAAAGGAGCAG
AAAAAAACGTTATGAATGTTAGCTTATGAAATATGTTGCacgtttttatt
tcaaaggaaCCATGAAATATGGAATGAACCTCGACTGTTctacattttct
caaaatttcctatCCATCACAAGCTCGGAATGAATTTCCACCAAAGCTGT
ATCATCTTTTTCTATATcgataaaaaggaaaaataaaacagaaaactTTT
ACATGTTTTAACCTCGGTactattcttaaattgttctaatTTTTTGCNTC
TTGGGCATTATGatatttagtgacgtggtggtataaccaagaaacttaaa
aatccttttagtaccacgacgtactaaaataccaaaaaggcgGTATCCAG
ACTAAAAAATCAgaacttttgagaaaaatggtctagagaagaaaaaaatt
gtcctcaGAAGACCAAAATTGGGTGGTCTCTGTGCCAAAACATCCccaaa
aattttattacatgggcAATAAAAGACCATTCCTCCAAAATGGGGTGATA
GTATGCAAAAGATTCTCGAGAACCCTTCTAGTACTCacatatgtctgaga
ttttggtactgacccccccccctgtttccGCTGGAATTCGAATCGGCGAA
AGTTAACTGTATATTGGTCAAACTTTTTACACTTTTAGCATGCTTGGATT
CGAAATACAGAAGTACAGTACAGAGAAAGTTCTACGGATACTCTTACTGC
ATGGTTCATTTTAAAATAGTGATTGAAAGATTATGATTTAAATTATATTT
GGCCCTAGAGGGGGATTAGAGATATGTTAATCCTAACCCTAAATTACAAG
CTATCATGTTATCAGAGATCTAGAAAAGAAGATTCCCTGAGTCTGCCCAA
GTTATCGAGGCCATGTGCCCATATACTCTTATGGTAAGTTCCCAAAAATC
ATGGAAATTTTC Run BLAST on NCBI transcript from alignment at sc0003049:11420..14771+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041852 ID=TCONS_00041852|Name=TCONS_00041852|organism=Clytia hemisphaerica|type=transcript|length=3352bp|location=Sequence derived from alignment at sc0003049:11420..14771+ (Clytia hemisphaerica)
TTTgtctttgtttgaaaaataaatagcaATTCAATAGGAAATTTAAAGAG
AAAGATTTAAAATGGAAtagatttctaaaaaagaaataaacgtAGTTAGT
TATGCTCCAAATAATGGACCTTTGTCGTTTCAAAACTGCTTTTTGTGTGA
AGTCATTCCCTTCATCAATAGAATAAACAGGTTTTTGTTCAAGTAGGATT
TCAAAAGAATTAACATAACACAATTTATCTGCCCTTCATGGTAAACAATT
TATTTTCGATGTTAAGAAACAGGTGTTCTTCACTAATCCTCTAGAAAAAc
gaaacaaaataatcataaaaGGTATATGATATTGTTATGTAACATTTTGT
AAAGCAAAAAAATGGATACCATAAAAATCGCTTATCTTCACTTTAGAGTT
TTTGGCTATCAAGCTTTCAATCTTTCATTTCTGTGTGTCGGTTTCTTTTG
TACATTGGAGTTTGGAAAGCAAAATAAGtaaagtattttttatttaaaac
aatGGTATTTCCCAATGATCTTTTCGGACTTTAATGAGATATTTACTTCT
CGTTTCATTCAGGATGGAGTTCTTCCACCAGTTCTTTATGTACAAATGGA
TAATTGCTGGAGAGAgaataaaaatcagtttttattAGCCTTTTTTGCGT
TTTTGGTGTTAAAAAGAATCGTTAAAAAGGTATATAAATACAACAATACT
CATCAAGACTTGAATATAGTTTAATTAATTAATGCCTAATtaatgaagaa
aagaaaaccAATTACTATAAAATTACTGTAAAAAGTTACAGTCGGCAAAT
GGTACCGAAATGATATCAACATTTTAGTTTCTGCTCGTAAATTCTTAAAA
CGCACCGTTTATACCAATTTAAACTTATGCATAAAATGTTCTTGAGCAAA
TAAAAAGATGATGTGTTACAAAAGAATGTATCCTTTGGttgaatgaaaat
aaacatATTGATTCGACATTAGGTTCGTCTTTCTTACTTGCTTGTTGGAC
ATACCCACGAAGATATCGATAGTGTaaggaaattattttcataatttttc
ctCTTCAtcaatttgttttaattttcttccaaaatagAAAAGACTTTTGC
ATTTGTCGATTTAAGTTATAGGCGATGGACGTACAAAACTTAATctcttt
ttatacatttttaatCTTATCAGACATTCAGTAACATTTCAACGACCTTA
AACAAGAAAGACGTATTCACAATTGATCACCTGCTTCAAACGATTAAGGA
ATCCTTTCAGAAACAAAACACGAGTGTTTCTTTACTGAAATATGTATTCA
ATTACCGGGACTGGTTTATGCCCAACATAAGAACACCGTCTCATCACACT
GAGCCGCACGCTTACAAGTTTGAGCTAGTCAACGAGGAAGTTGACTTGTC
TTTTAAACGTTTCGCAATGGATCCAGAATGGACCCAACTCAAGCCAGCAC
TCCTTTCGCATCTACCAACTGGACCCATTCCCTTGGTACGGTTTAGTTGG
AGAAAACAACTTCCAGTAGAcgagattgaagaaaaaatacaaTCTTGCTC
TGTGAAATTGCCCCATCAATCAATGATATGGTGGGGTAATTTCACCGACA
ATCTACGAAAGGAACAAATGTAAGAGTCTCCTTTCTTCAAAAGTATGGAA
AATTGAGCTAAAAACAGTATTTATCAGTCTAAACTCGTAAACTCGAAATT
TTTAGTCAATGATTCCCGTTCTGGTcgattttattgttttaaaaagcacg
tgtttccatttttttaattgaaatcaatttttggaatcAATTCTTTTCCA
AGGAAATGGAGTGAAGCCAGTGCTGCAACTCTGATATCAGATGGTGGATG
CTTTTTGAGTTATTTGAAACCTTACGCAGATGTTGTGCCGTTCTCAAAAG
TATGTGCATAAACATTTTAATGtatctttttcaaaagtaaagaaaagaga
agaaaatttaatagaattcatttaaattttaatcaaatatCTCTTAGATG
TCAGAGGACGACGCAAGGAGAAACGAGCATATAGATATGCTCATGGAAAA
GTCACAAAGGACTCCGCGTGTAAGGATTTGATTAAAGAATTATTTGTAAT
AAAGCAATTATGTTATCTCTAATTGAATAGAAAAGTAGAAGAAGAATAAG
TGTATTTCAATtgaatttatttcaattttagacGGCGATTTCAAAGCATT
CCGAGCGCGAGAagccaaagaaaaagaagaagaaaaatcccACTGAAACG
GCAAACGAAAACAAAACGAACAAAacgaacaaaaagaaaaaaaacaatga
aacggCAAAcgcaaacaaaacaaacaaaaagaaaaacaacaaaaacgaaa
AGGATCCGCTCTCAAAAGCAAAGGCACGGGTCAAGGCAAAAAGGGCTTTA
AAAGTCAAGTCCAGAAATGTAATAGCCGGAAAAGGAGCAGAAAAAAACGT
TATGAATGTTAGCTTATGAAATATGTTGCacgtttttatttcaaaggaaC
CATGAAATATGGAATGAACCTCGACTGTTctacattttctcaaaatttcc
tatCCATCACAAGCTCGGAATGAATTTCCACCAAAGCTGTATCATCTTTT
TCTATATcgataaaaaggaaaaataaaacagaaaactTTTACATGTTTTA
ACCTCGGTactattcttaaattgttctaatTTTTTGCNTCTTGGGCATTA
TGatatttagtgacgtggtggtataaccaagaaacttaaaaatcctttta
gtaccacgacgtactaaaataccaaaaaggcgGTATCCAGACTAAAAAAT
CAgaacttttgagaaaaatggtctagagaagaaaaaaattgtcctcaGAA
GACCAAAATTGGGTGGTCTCTGTGCCAAAACATCCccaaaaattttatta
catgggcAATAAAAGACCATTCCTCCAAAATGGGGTGATAGTATGCAAAA
GATTCTCGAGAACCCTTCTAGTACTCacatatgtctgagattttggtact
gacccccccccctgtttccGCTGGAATTCGAATCGGCGAAAGTTAACTGT
ATATTGGTCAAACTTTTTACACTTTTAGCATGCTTGGATTCGAAATACAG
AAGTACAGTACAGAGAAAGTTCTACGGATACTCTTACTGCATGGTTCATT
TTAAAATAGTGATTGAAAGATTATGATTTAAATTATATTTGGCCCTAGAG
GGGGATTAGAGATATGTTAATCCTAACCCTAAATTACAAGCTATCATGTT
ATCAGAGATCTAGAAAAGAAGATTCCCTGAGTCTGCCCAAGTTATCGAGG
CCATGTGCCCATATACTCTTATGGTAAGTTCCCAAAAATCATGGAAATTT
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041852-exon-sc0003049-1491911889:11420..12442 | TCONS_00041852-exon-sc0003049-1491911889:11420..12442 | Clytia hemisphaerica | exon |
| TCONS_00041852-exon-sc0003049-1510915933:11420..12442 | TCONS_00041852-exon-sc0003049-1510915933:11420..12442 | Clytia hemisphaerica | exon |
| TCONS_00041852-exon-sc0003049-1575043694:11420..12442 | TCONS_00041852-exon-sc0003049-1575043694:11420..12442 | Clytia hemisphaerica | exon |
| TCONS_00041852-exon-sc0003049-1491911889:12593..13038 | TCONS_00041852-exon-sc0003049-1491911889:12593..13038 | Clytia hemisphaerica | exon |
| TCONS_00041852-exon-sc0003049-1510915933:12593..13038 | TCONS_00041852-exon-sc0003049-1510915933:12593..13038 | Clytia hemisphaerica | exon |
| TCONS_00041852-exon-sc0003049-1575043694:12593..13038 | TCONS_00041852-exon-sc0003049-1575043694:12593..13038 | Clytia hemisphaerica | exon |
| TCONS_00041852-exon-sc0003049-1491911889:13417..13488 | TCONS_00041852-exon-sc0003049-1491911889:13417..13488 | Clytia hemisphaerica | exon |
| TCONS_00041852-exon-sc0003049-1510915933:13417..13488 | TCONS_00041852-exon-sc0003049-1510915933:13417..13488 | Clytia hemisphaerica | exon |
| TCONS_00041852-exon-sc0003049-1575043694:13417..13488 | TCONS_00041852-exon-sc0003049-1575043694:13417..13488 | Clytia hemisphaerica | exon |
| TCONS_00041852-exon-sc0003049-1491911889:13601..14771 | TCONS_00041852-exon-sc0003049-1491911889:13601..14771 | Clytia hemisphaerica | exon |
| TCONS_00041852-exon-sc0003049-1510915933:13601..14771 | TCONS_00041852-exon-sc0003049-1510915933:13601..14771 | Clytia hemisphaerica | exon |
| TCONS_00041852-exon-sc0003049-1575043694:13601..14771 | TCONS_00041852-exon-sc0003049-1575043694:13601..14771 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003049 | supercontig | sc0003049:11420..14771 + |
Blast
The following BLAST results are available for this feature:
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