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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041849 ID=TCONS_00041849|Name=TCONS_00041849|organism=Clytia hemisphaerica|type=transcript|length=816bp
GTTTccggatttttttaattttctattgttATCTTGAATCTGCCACGACC
TTGTGACGTTAAACTGTGTTGTTGGAACAATCACAGTATTCCTTATTATG
GGATAATAGAGGGGGCAGCTGTGAATTTCAAGCAAAAGCAATTTTTGCCT
CTATTCTTTAGTCTATAGTCCTTCTGTTATGATCATAAATCATAATTAAT
CAAATATAACTTTAATACTTTTCATCCAAAAGAACACGAGATTCACGAAG
TGTGGCATATGCACCCTAATCAAAGACATAAAAAATTCAACCAAAGACAA
GGATTTGAAAAATAAAATGTCCTTAATACGAAAATTGCATAACGAACAAC
AAATGGGTGAAAGAGCAAAATACAAGGTCCATCAGACTAAAGCCAGAAAT
AATCCTGATCGATACGCCAGTATTATCATCGATGGAATGGATCAGAACAA
AACATCTCTGCCTCATTTTTTCACCCTTTCTAAGGTCTGTTttacacttt
ttgataaaagatcaGTTTAACCAAATCTGACTCGAGAGTACAaacataca
cccctgtctcagtgtcAGTGTgggatattttttttatatctaaCGGGGTT
ATCAAAAACGGACTTTTTCCACTGGGGATACGAAATTATGATTGTTCTTT
GTTCGAAATATTGGTGGGGATGAGAAATTTAAGTAGATCAAAGtttagtg
ggaatataaagatttttacgtttttcaatGGGGAATTTCTATACTATTTT
TACACTGGGACGACTTTTAGTAGAAGTCGGAAAATTACCACCCTTAAAAC
ATCTGTAATTaaagaa Run BLAST on NCBI transcript from alignment at sc0003049:9344..10921+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041849 ID=TCONS_00041849|Name=TCONS_00041849|organism=Clytia hemisphaerica|type=transcript|length=1578bp|location=Sequence derived from alignment at sc0003049:9344..10921+ (Clytia hemisphaerica)
GTTTccggatttttttaattttctattgttATCTTGAATCTGCCACGACC
TTGTGACGTTAAACTGTGTTGTTGGAACAATCACAGTATTCCTTATTATG
GGATAATAGAGGGGGCAGCTGTGAATTTCAAGCAAAAGCAATTTTTGCCT
CTATTCTTTAGTCTATAGTCCTTCTGTTATGATCATAAATCATAATTAAT
CAAATATAACTTTAATACTTTTCATCCAAAAGAACACGAGATTCACGAAG
TGTGGCATATGCACCCTAATCAAAGACATAAAAAATTCAACCAAAGACAA
GGATTTGAAAAATAAAATGTCCTTAATACGAAAATTGCATAACGAACAAC
AAATGTAAGTTGGTTGATTTATGTTTGTAAAATGCAAGCACTTTCTTtgt
tataaaatgaaaatccttAGCTGTTCATAATGTCTAGACAGCCTTTCCAG
CAGAGACACGGTGTATCAgtcgaaagcagccggcgaggcgaccttttttt
tcgatgtgttctgagagtatatttcagctagaaattttgatctgttctga
tcagaacttcgaaaattaatcagctagaagtaatgatgtgttctgatgag
acaggggtataatcaaattcatctaacgtgttcttgttgtctagataacc
ctagaaagcttcagaacacatcttttaaggagacaggggtataaccaaga
aaaaatttatgtAATCTTGTTacctagtaaccctagaaattttcagaaca
catctttcgtagagaaaaacaaatatctttcaggtttatcttggcaaact
gtttttcctagattttagaacacatcaaaccataaagtaatgataagttt
agggagacaaatagtgtgataaaggtttcctagaaataagaacacgtcat
ttataaaaagaattgaaaggtcataacatttggtctcctagaaaataaga
acacatatttctaaaaaatctctccgccggctgcttctgtatCAGTAAAC
AAGATTGTACTAAGAATATAATTAATacgaaaaatatatcattttgagca
tgaaattttgagagTGAACAACAGGAATTATTCCTGTTTACACCAATACA
ATTTTTGTATCCTTAGGGGTGAAAGAGCAAAATACAAGGTCCATCAGACT
AAAGCCAGAAATAATCCTGATCGATACGCCAGTATTATCATCGATGGAAT
GGATCAGAACAAAACATCTCTGCCTCATTTTTTCACCCTTTCTAAGGTCT
GTTttacactttttgataaaagatcaGTTTAACCAAATCTGACTCGAGAG
TACAaacatacacccctgtctcagtgtcAGTGTgggatattttttttata
tctaaCGGGGTTATCAAAAACGGACTTTTTCCACTGGGGATACGAAATTA
TGATTGTTCTTTGTTCGAAATATTGGTGGGGATGAGAAATTTAAGTAGAT
CAAAGtttagtgggaatataaagatttttacgtttttcaatGGGGAATTT
CTATACTATTTTTACACTGGGACGACTTTTAGTAGAAGTCGGAAAATTAC
CACCCTTAAAACATCTGTAATTaaagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041849-exon-sc0003049-1491911889:9344..9697 | TCONS_00041849-exon-sc0003049-1491911889:9344..9697 | Clytia hemisphaerica | exon |
| TCONS_00041849-exon-sc0003049-1510915933:9344..9697 | TCONS_00041849-exon-sc0003049-1510915933:9344..9697 | Clytia hemisphaerica | exon |
| TCONS_00041849-exon-sc0003049-1575043694:9344..9697 | TCONS_00041849-exon-sc0003049-1575043694:9344..9697 | Clytia hemisphaerica | exon |
| TCONS_00041849-exon-sc0003049-1491911889:10460..10921 | TCONS_00041849-exon-sc0003049-1491911889:10460..10921 | Clytia hemisphaerica | exon |
| TCONS_00041849-exon-sc0003049-1510915933:10460..10921 | TCONS_00041849-exon-sc0003049-1510915933:10460..10921 | Clytia hemisphaerica | exon |
| TCONS_00041849-exon-sc0003049-1575043694:10460..10921 | TCONS_00041849-exon-sc0003049-1575043694:10460..10921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003049 | supercontig | sc0003049:9344..10921 + |
Blast
The following BLAST results are available for this feature:
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