TCONS_00041850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041850
Unique NameTCONS_00041850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041850 ID=TCONS_00041850|Name=TCONS_00041850|organism=Clytia hemisphaerica|type=transcript|length=2419bp
TTTgtctttgtttgaaaaataaatagcaATTCAATAGGAAATTTAAAGAG
AAAGATTTAAAATGGAAtagatttctaaaaaagaaataaacgtAGTTAGT
TATGCTCCAAATAATGGACCTTTGTCGTTTCAAAACTGCTTTTTGTGTGA
AGTCATTCCCTTCATCAATAGAATAAACAGGTTTTTGTTCAAGTAGGATT
TCAAAAGAATTAACATAACACAATTTATCTGCCCTTCATGGTAAACAATT
TATTTTCGATGTTAAGAAACAGGTGTTCTTCACTAATCCTCTAGAAAAAc
gaaacaaaataatcataaaaGGTATATGATATTGTTATGTAACATTTTGT
AAAGCAAAAAAATGGATACCATAAAAATCGCTTATCTTCACTTTAGAGTT
TTTGGCTATCAAGCTTTCAATCTTTCATTTCTGTGTGTCGGTTTCTTTTG
TACATTGGAGTTTGGAAAGCAAAATAAGtaaagtattttttatttaaaac
aatGGTATTTCCCAATGATCTTTTCGGACTTTAATGAGATATTTACTTCT
CGTTTCATTCAGGATGGAGTTCTTCCACCAGTTCTTTATGTACAAATGGA
TAATTGCTGGAGAGAgaataaaaatcagtttttattAGCCTTTTTTGCGT
TTTTGGTGTTAAAAAGAATCGTTAAAAAGGTTCGTCTTTCTTACTTGCTT
GTTGGACATACCCACGAAGATATCGATAGTACATTCAGTAACATTTCAAC
GACCTTAAACAAGAAAGACGTATTCACAATTGATCACCTGCTTCAAACGA
TTAAGGAATCCTTTCAGAAACAAAACACGAGTGTTTCTTTACTGAAATAT
GTATTCAATTACCGGGACTGGTTTATGCCCAACATAAGAACACCGTCTCA
TCACACTGAGCCGCACGCTTACAAGTTTGAGCTAGTCAACGAGGAAGTTG
ACTTGTCTTTTAAACGTTTCGCAATGGATCCAGAATGGACCCAACTCAAG
CCAGCACTCCTTTCGCATCTACCAACTGGACCCATTCCCTTGGTACGGTT
TAGTTGGAGAAAACAACTTCCAGTAGAcgagattgaagaaaaaatacaaT
CTTGCTCTGTGAAATTGCCCCATCAATCAATGATATGGTGGGGTAATTTC
ACCGACAATCTACGAAAGGAACAAATATGTCAGAGGACGACGCAAGGAGA
AACGAGCATATAGATATGCTCATGGAAAAGTCACAAAGGACTCCGCGTac
GGCGATTTCAAAGCATTCCGAGCGCGAGAagccaaagaaaaagaagaaga
aaaatcccACTGAAACGGCAAACGAAAACAAAACGAACAAAacgaacaaa
aagaaaaaaaacaatgaaacggCAAAcgcaaacaaaacaaacaaaaagaa
aaacaacaaaaacgaaaAGGATCCGCTCTCAAAAGCAAAGGCACGGGTCA
AGGCAAAAAGGGCTTTAAAAGTCAAGTCCAGAAATGTAATAGCCGGAAAA
GGAGCAGAAAAAAACGTTATGAATGTTAGCTTATGAAATATGTTGCacgt
ttttatttcaaaggaaCCATGAAATATGGAATGAACCTCGACTGTTctac
attttctcaaaatttcctatCCATCACAAGCTCGGAATGAATTTCCACCA
AAGCTGTATCATCTTTTTCTATATcgataaaaaggaaaaataaaacagaa
aactTTTACATGTTTTAACCTCGGTactattcttaaattgttctaatTTT
TTGCNTCTTGGGCATTATGatatttagtgacgtggtggtataaccaagaa
acttaaaaatccttttagtaccacgacgtactaaaataccaaaaaggcgG
TATCCAGACTAAAAAATCAgaacttttgagaaaaatggtctagagaagaa
aaaaattgtcctcaGAAGACCAAAATTGGGTGGTCTCTGTGCCAAAACAT
CCccaaaaattttattacatgggcAATAAAAGACCATTCCTCCAAAATGG
GGTGATAGTATGCAAAAGATTCTCGAGAACCCTTCTAGTACTCacatatg
tctgagattttggtactgacccccccccctgtttccGCTGGAATTCGAAT
CGGCGAAAGTTAACTGTATATTGGTCAAACTTTTTACACTTTTAGCATGC
TTGGATTCGAAATACAGAAGTACAGTACAGAGAAAGTTCTACGGATACTC
TTACTGCATGGTTCATTTTAAAATAGTGATTGAAAGATTATGATTTAAAT
TATATTTGGCCCTAGAGGGGGATTAGAGATATGTTAATCCTAACCCTAAA
TTACAAGCTATCATGTTATCAGAGATCTAGAAAAGAAGATTCCCTGAGTC
TGCCCAAGTTATCGAGGCCATGTGCCCATATACTCTTATGGTAAGTTCCC
AAAAATCATGGAAATTTTC
Run BLAST on NCBI

transcript from alignment at sc0003049:11420..14771+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041850 ID=TCONS_00041850|Name=TCONS_00041850|organism=Clytia hemisphaerica|type=transcript|length=3352bp|location=Sequence derived from alignment at sc0003049:11420..14771+ (Clytia hemisphaerica)
TTTgtctttgtttgaaaaataaatagcaATTCAATAGGAAATTTAAAGAG
AAAGATTTAAAATGGAAtagatttctaaaaaagaaataaacgtAGTTAGT
TATGCTCCAAATAATGGACCTTTGTCGTTTCAAAACTGCTTTTTGTGTGA
AGTCATTCCCTTCATCAATAGAATAAACAGGTTTTTGTTCAAGTAGGATT
TCAAAAGAATTAACATAACACAATTTATCTGCCCTTCATGGTAAACAATT
TATTTTCGATGTTAAGAAACAGGTGTTCTTCACTAATCCTCTAGAAAAAc
gaaacaaaataatcataaaaGGTATATGATATTGTTATGTAACATTTTGT
AAAGCAAAAAAATGGATACCATAAAAATCGCTTATCTTCACTTTAGAGTT
TTTGGCTATCAAGCTTTCAATCTTTCATTTCTGTGTGTCGGTTTCTTTTG
TACATTGGAGTTTGGAAAGCAAAATAAGtaaagtattttttatttaaaac
aatGGTATTTCCCAATGATCTTTTCGGACTTTAATGAGATATTTACTTCT
CGTTTCATTCAGGATGGAGTTCTTCCACCAGTTCTTTATGTACAAATGGA
TAATTGCTGGAGAGAgaataaaaatcagtttttattAGCCTTTTTTGCGT
TTTTGGTGTTAAAAAGAATCGTTAAAAAGGTATATAAATACAACAATACT
CATCAAGACTTGAATATAGTTTAATTAATTAATGCCTAATtaatgaagaa
aagaaaaccAATTACTATAAAATTACTGTAAAAAGTTACAGTCGGCAAAT
GGTACCGAAATGATATCAACATTTTAGTTTCTGCTCGTAAATTCTTAAAA
CGCACCGTTTATACCAATTTAAACTTATGCATAAAATGTTCTTGAGCAAA
TAAAAAGATGATGTGTTACAAAAGAATGTATCCTTTGGttgaatgaaaat
aaacatATTGATTCGACATTAGGTTCGTCTTTCTTACTTGCTTGTTGGAC
ATACCCACGAAGATATCGATAGTGTaaggaaattattttcataatttttc
ctCTTCAtcaatttgttttaattttcttccaaaatagAAAAGACTTTTGC
ATTTGTCGATTTAAGTTATAGGCGATGGACGTACAAAACTTAATctcttt
ttatacatttttaatCTTATCAGACATTCAGTAACATTTCAACGACCTTA
AACAAGAAAGACGTATTCACAATTGATCACCTGCTTCAAACGATTAAGGA
ATCCTTTCAGAAACAAAACACGAGTGTTTCTTTACTGAAATATGTATTCA
ATTACCGGGACTGGTTTATGCCCAACATAAGAACACCGTCTCATCACACT
GAGCCGCACGCTTACAAGTTTGAGCTAGTCAACGAGGAAGTTGACTTGTC
TTTTAAACGTTTCGCAATGGATCCAGAATGGACCCAACTCAAGCCAGCAC
TCCTTTCGCATCTACCAACTGGACCCATTCCCTTGGTACGGTTTAGTTGG
AGAAAACAACTTCCAGTAGAcgagattgaagaaaaaatacaaTCTTGCTC
TGTGAAATTGCCCCATCAATCAATGATATGGTGGGGTAATTTCACCGACA
ATCTACGAAAGGAACAAATGTAAGAGTCTCCTTTCTTCAAAAGTATGGAA
AATTGAGCTAAAAACAGTATTTATCAGTCTAAACTCGTAAACTCGAAATT
TTTAGTCAATGATTCCCGTTCTGGTcgattttattgttttaaaaagcacg
tgtttccatttttttaattgaaatcaatttttggaatcAATTCTTTTCCA
AGGAAATGGAGTGAAGCCAGTGCTGCAACTCTGATATCAGATGGTGGATG
CTTTTTGAGTTATTTGAAACCTTACGCAGATGTTGTGCCGTTCTCAAAAG
TATGTGCATAAACATTTTAATGtatctttttcaaaagtaaagaaaagaga
agaaaatttaatagaattcatttaaattttaatcaaatatCTCTTAGATG
TCAGAGGACGACGCAAGGAGAAACGAGCATATAGATATGCTCATGGAAAA
GTCACAAAGGACTCCGCGTGTAAGGATTTGATTAAAGAATTATTTGTAAT
AAAGCAATTATGTTATCTCTAATTGAATAGAAAAGTAGAAGAAGAATAAG
TGTATTTCAATtgaatttatttcaattttagacGGCGATTTCAAAGCATT
CCGAGCGCGAGAagccaaagaaaaagaagaagaaaaatcccACTGAAACG
GCAAACGAAAACAAAACGAACAAAacgaacaaaaagaaaaaaaacaatga
aacggCAAAcgcaaacaaaacaaacaaaaagaaaaacaacaaaaacgaaa
AGGATCCGCTCTCAAAAGCAAAGGCACGGGTCAAGGCAAAAAGGGCTTTA
AAAGTCAAGTCCAGAAATGTAATAGCCGGAAAAGGAGCAGAAAAAAACGT
TATGAATGTTAGCTTATGAAATATGTTGCacgtttttatttcaaaggaaC
CATGAAATATGGAATGAACCTCGACTGTTctacattttctcaaaatttcc
tatCCATCACAAGCTCGGAATGAATTTCCACCAAAGCTGTATCATCTTTT
TCTATATcgataaaaaggaaaaataaaacagaaaactTTTACATGTTTTA
ACCTCGGTactattcttaaattgttctaatTTTTTGCNTCTTGGGCATTA
TGatatttagtgacgtggtggtataaccaagaaacttaaaaatcctttta
gtaccacgacgtactaaaataccaaaaaggcgGTATCCAGACTAAAAAAT
CAgaacttttgagaaaaatggtctagagaagaaaaaaattgtcctcaGAA
GACCAAAATTGGGTGGTCTCTGTGCCAAAACATCCccaaaaattttatta
catgggcAATAAAAGACCATTCCTCCAAAATGGGGTGATAGTATGCAAAA
GATTCTCGAGAACCCTTCTAGTACTCacatatgtctgagattttggtact
gacccccccccctgtttccGCTGGAATTCGAATCGGCGAAAGTTAACTGT
ATATTGGTCAAACTTTTTACACTTTTAGCATGCTTGGATTCGAAATACAG
AAGTACAGTACAGAGAAAGTTCTACGGATACTCTTACTGCATGGTTCATT
TTAAAATAGTGATTGAAAGATTATGATTTAAATTATATTTGGCCCTAGAG
GGGGATTAGAGATATGTTAATCCTAACCCTAAATTACAAGCTATCATGTT
ATCAGAGATCTAGAAAAGAAGATTCCCTGAGTCTGCCCAAGTTATCGAGG
CCATGTGCCCATATACTCTTATGGTAAGTTCCCAAAAATCATGGAAATTT
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025753XLOC_025753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041850-exon-sc0003049-1491911889:11420..12098TCONS_00041850-exon-sc0003049-1491911889:11420..12098Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1510915933:11420..12098TCONS_00041850-exon-sc0003049-1510915933:11420..12098Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1575043694:11420..12098TCONS_00041850-exon-sc0003049-1575043694:11420..12098Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1491911889:12392..12442TCONS_00041850-exon-sc0003049-1491911889:12392..12442Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1510915933:12392..12442TCONS_00041850-exon-sc0003049-1510915933:12392..12442Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1575043694:12392..12442TCONS_00041850-exon-sc0003049-1575043694:12392..12442Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1491911889:12593..13038TCONS_00041850-exon-sc0003049-1491911889:12593..13038Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1510915933:12593..13038TCONS_00041850-exon-sc0003049-1510915933:12593..13038Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1575043694:12593..13038TCONS_00041850-exon-sc0003049-1575043694:12593..13038Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1491911889:13417..13488TCONS_00041850-exon-sc0003049-1491911889:13417..13488Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1510915933:13417..13488TCONS_00041850-exon-sc0003049-1510915933:13417..13488Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1575043694:13417..13488TCONS_00041850-exon-sc0003049-1575043694:13417..13488Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1491911889:13601..14771TCONS_00041850-exon-sc0003049-1491911889:13601..14771Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1510915933:13601..14771TCONS_00041850-exon-sc0003049-1510915933:13601..14771Clytia hemisphaericaexon
TCONS_00041850-exon-sc0003049-1575043694:13601..14771TCONS_00041850-exon-sc0003049-1575043694:13601..14771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003049supercontigsc0003049:11420..14771 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.255598	0	0.101178	0.17183	0.0763986	0	0.115219	0	0.0757594	0	0.0626909	0	0	0	0	0	0	0	0	0	0	0	0.0499651
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top