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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041847 ID=TCONS_00041847|Name=TCONS_00041847|organism=Clytia hemisphaerica|type=transcript|length=2162bp TTTTTATTGAATTCGAAATAATGTAAAACGTACATTTAGGTTAAGCGGTA CCATTATCCTTTTAAAACGAATTCAATTTCTTTTTTTAACACTATTAAAG GGATTATACAGTGTTATATACACCCGACTCGTCTGAAACTGATGTCAGCA AAATTTTAATAAAAGATTCCTTTCAAATTTGTAAATAAAAGGAAGAAAAA AAtcttgctccacatttttctttattcattacaaaagattctatttattt caatctgctgaatcaacatacattatgactatgtaaaaggtcaatggctt taacgaaaaaacctttttcaccTAGGACccattttatgatattttttttt gaaatggtAAGATGGAAACAAGCGAAGAtaagaataaaaatttgatgGCA GCAAAAATACCTCGGAAGAAGCAGAGACTGAATATCGAAAAAGTTGCGAA TGATTTAGAAGAATTTAAACAGAACAGTTGCtgtgaaagaaaatgtcacg aAGGCTTTTCTGCGTTTCAAGTGACTAGAATAAGGGAGCAATTCTGGGAG AAAGACGAAGAGCAACAAAATACGTTTATCATAAACTTTTTGAGATCGCA AAGATTTTCTCACGCTTTGGTGTTTCATATTGATCGAGTTGTCTGccaaa aattttggtttttttgttATGGCATATCAAAGTCTAGATTCTATCGAAAA CGCAATGCCCTTCTAAAAGGCCACAAAGATGGGGCAACAGAGCGAAAGGG AGCAAAACAATGCAGCAGCGAATATCATCATGCTGTTTTATGGATAAAGC GATTCGCTGATGATTGTGGAGATGCTCCGCCGGACCGGGATCCTGATTCT CGGGTCATCCCAGCCTGTTTTACCAAAAGAGCTGTTTACAAGACATATAA AGAAGAAATTCAATTACAGATGTCAGAGGACGACGCAAGGAGAAACGAGC ATATAGATATGCTCATGGAAAAGTCACAAAGGACTCCGCGTacGGCGATT TCAAAGCATTCCGAGCGCGAGAagccaaagaaaaagaagaagaaaaatcc cACTGAAACGGCAAACGAAAACAAAACGAACAAAacgaacaaaaagaaaa aaaacaatgaaacggCAAAcgcaaacaaaacaaacaaaaagaaaaacaac aaaaacgaaaAGGATCCGCTCTCAAAAGCAAAGGCACGGGTCAAGGCAAA AAGGGCTTTAAAAGTCAAGTCCAGAAATGTAATAGCCGGAAAAGGAGCAG AAAAAAACGTTATGAATGTTAGCTTATGAAATATGTTGCacgtttttatt tcaaaggaaCCATGAAATATGGAATGAACCTCGACTGTTctacattttct caaaatttcctatCCATCACAAGCTCGGAATGAATTTCCACCAAAGCTGT ATCATCTTTTTCTATATcgataaaaaggaaaaataaaacagaaaactTTT ACATGTTTTAACCTCGGTactattcttaaattgttctaatTTTTTGCNTC TTGGGCATTATGatatttagtgacgtggtggtataaccaagaaacttaaa aatccttttagtaccacgacgtactaaaataccaaaaaggcgGTATCCAG ACTAAAAAATCAgaacttttgagaaaaatggtctagagaagaaaaaaatt gtcctcaGAAGACCAAAATTGGGTGGTCTCTGTGCCAAAACATCCccaaa aattttattacatgggcAATAAAAGACCATTCCTCCAAAATGGGGTGATA GTATGCAAAAGATTCTCGAGAACCCTTCTAGTACTCacatatgtctgaga ttttggtactgacccccccccctgtttccGCTGGAATTCGAATCGGCGAA AGTTAACTGTATATTGGTCAAACTTTTTACACTTTTAGCATGCTTGGATT CGAAATACAGAAGTACAGTACAGAGAAAGTTCTACGGATACTCTTACTGC ATGGTTCATTTTAAAATAGTGATTGAAAGATTATGATTTAAATTATATTT GGCCCTAGAGGGGGATTAGAGATATGTTAATCCTAACCCTAAATTACAAG CTATCATGTTATCAGAGATCTAGAAAAGAAGATTCCCTGAGTCTGCCCAA GTTATCGAGGCCATGTGCCCATATACTCTTATGGTAAGTTCCCAAAAATC ATGGAAATTTTC Run BLAST on NCBI transcript from alignment at sc0003049:7295..14771+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041847 ID=TCONS_00041847|Name=TCONS_00041847|organism=Clytia hemisphaerica|type=transcript|length=7477bp|location=Sequence derived from alignment at sc0003049:7295..14771+ (Clytia hemisphaerica) TTTTTATTGAATTCGAAATAATGTAAAACGTACATTTAGGTTAAGCGGTA
CCATTATCCTTTTAAAACGAATTCAATTTCTTTTTTTAACACTATTAAAG
GGATTATACAGTGTTATATACACCCGACTCGTCTGAAACTGATGTCAGCA
AAATTTTAATAAAAGATTCCTTTCAAATTTGTAAATAAAAGGAAGAAAAA
AAtcttgctccacatttttctttattcattacaaaagattctatttattt
caatctgctgaatcaacatacattatgactatgtaaaaggtcaatggctt
taacgaaaaaacctttttcaccTAGGACccattttatgatattttttttt
gaaatggtAAGATGGAAACAAGCGAAGAtaagaataaaaatttgatgGCA
GCAAAAGTAAGTTAATCTTTTATTATTACGTTTTTATGCCCGGCAATTAA
CTATCTATCTGATGCCTTCTTTCGTATAGTTTAGCATAGTTTAGTAGAAT
TTAGAATTTATCCCGTATGAATTCTCAAATTTCTAATATATACAGAGAAA
AACATCCCAAGCGAGATCGAACCAAACAGAAAAGTTTCAATGAATCGTAT
AAATTTTAGtaaagattttaaagattataGAGAAAAATTGCTTaacaatt
gaaaaaaatgtaagattACTTTGGGTAATTTTCTGTTTTATTCAACCTTC
TAGATACCTCGGAAGAAGCAGAGACTGAATATCGAAAAAGTTGCGAATGA
TTTAGAAGAATTTAAACAGAACAGTTGCtgtgaaagaaaatgtcacgaAG
GCTTTTCTGCGTTTCAAGTGACTAGAATAAGGGAGCAATTCTGGGAGAAA
GACGAAGAGCAACAAAATACGTTTATCATAAACTTTTTGAGATCGCAAAG
ATTTTCTCACGCTTTGGTGTTTCATATTGATCGAGTTGTCTGccaaaaat
tttggtttttttgttATGGCATATCAAAGTCTAGGTAACTTTcccatttt
atatttttaaagtgaaatatttttataagaaaagtgtttttttgGTTTCA
TGATANTCTTTACTTgaggatttttttatgaaatttgactttgaaaagAT
TTAAGATAACATTATTCTTAGGACATTCTTAACTTTtaggccaatttcat
catgaatattcttataaagtatattcttataaaaaaagcgtgtataaagC
TTTAACATGCCTCGTTTCAATCTTATCGATTTTCCATTACGGTTACTCTT
TTTAGATTCTATCGAAAACGCAATGCCCTTCTAAAAGGCCACAAAGATGG
GGCAACAGAGCGAAAGGGAGCAAAACAATGCAGCAGCGAATATGTAAGta
ttgcagatttttcagatttcgtTATTATCATTGTTGCATGTTGTTGTTTT
AGCTACTAAGAGAAAAGGTCCTTTCCCATGTTCTATTTtacaaagaaatt
tattttatgcATTTTAGCATCATGCTGTTTTATGGATAAAGCGATTCGCT
GATGATTGTGGAGATGCTCCGCCGGACCGGGATCCTGATTCTCGGGTCAT
CCCAGCCTGTTTTACCAAAAGAGCTGTTTACAAGACATATAAAGAAGAAA
TTCAATTACAGGTTATTCAAAATGGAATTAAATCTATCATTCAAACAAGT
TTCTTTAAAGCTTGTTCCTCACTTGTTGAAAAANAAATTACAGGTTATTC
AAAATGGAATTAAATCTATCATTCAAACAAGTGTCTTTAAAGCCTGTTCC
TCACTTGTTGAAAAAATCTAACATTAGACGCGGATATTTAATTCTGTTCA
CATTGCGGTGCCTTTGAACTTTAGATGCGCGGAACAAATAAAGGAATAAA
TCTCTAGGGAGTCTCGTTCAAactctacacgcttttttataagagcagtt
cttaataaaaaaaacgtgtattcaatttttctctGCGTCCTTTCTGCCAT
GAATATAGCTTTATTTTTGCACCTATCCTGCTTTGTTTTGCCAGTTTAAT
TAAAGTTTCAAGTTGAAAATTAATCAgcaaattttaaaagatttcagaGG
TTTccggatttttttaattttctattgttATCTTGAATCTGCCACGACCT
TGTGACGTTAAACTGTGTTGTTGGAACAATCACAGTATTCCTTATTATGG
GATAATAGAGGGGGCAGCTGTGAATTTCAAGCAAAAGCAATTTTTGCCTC
TATTCTTTAGTCTATAGTCCTTCTGTTATGATCATAAATCATAATTAATC
AAATATAACTTTAATACTTTTCATCCAAAAGAACACGAGATTCACGAAGT
GTGGCATATGCACCCTAATCAAAGACATAAAAAATTCAACCAAAGACAAG
GATTTGAAAAATAAAATGTCCTTAATACGAAAATTGCATAACGAACAACA
AATGTAAGTTGGTTGATTTATGTTTGTAAAATGCAAGCACTTTCTTtgtt
ataaaatgaaaatccttAGCTGTTCATAATGTCTAGACAGCCTTTCCAGC
AGAGACACGGTGTATCAgtcgaaagcagccggcgaggcgacctttttttt
cgatgtgttctgagagtatatttcagctagaaattttgatctgttctgat
cagaacttcgaaaattaatcagctagaagtaatgatgtgttctgatgaga
caggggtataatcaaattcatctaacgtgttcttgttgtctagataaccc
tagaaagcttcagaacacatcttttaaggagacaggggtataaccaagaa
aaaatttatgtAATCTTGTTacctagtaaccctagaaattttcagaacac
atctttcgtagagaaaaacaaatatctttcaggtttatcttggcaaactg
tttttcctagattttagaacacatcaaaccataaagtaatgataagttta
gggagacaaatagtgtgataaaggtttcctagaaataagaacacgtcatt
tataaaaagaattgaaaggtcataacatttggtctcctagaaaataagaa
cacatatttctaaaaaatctctccgccggctgcttctgtatCAGTAAACA
AGATTGTACTAAGAATATAATTAATacgaaaaatatatcattttgagcat
gaaattttgagagTGAACAACAGGAATTATTCCTGTTTACACCAATACAA
TTTTTGTATCCTTAGGGGTGAAAGAGCAAAATACAAGGTCCATCAGACTA
AAGCCAGAAATAATCCTGATCGATACGCCAGTATTATCATCGATGGAATG
GATCAGAACAAAACATCTCTGCCTCATTTTTTCACCCTTTCTAAGGTCTG
TTttacactttttgataaaagatcaGTTTAACCAAATCTGACTCGAGAGT
ACAaacatacacccctgtctcagtgtcAGTGTgggatattttttttatat
ctaaCGGGGTTATCAAAAACGGACTTTTTCCACTGGGGATACGAAATTAT
GATTGTTCTTTGTTCGAAATATTGGTGGGGATGAGAAATTTAAGTAGATC
AAAGtttagtgggaatataaagatttttacgtttttcaatGGGGAATTTC
TATACTATTTTTACACTGGGACGACTTTTAGTAGAAGTCGGAAAATTACC
ACCCTTAAAACATCTGTAATTaaagaaatacacgtttttttttNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTCCTTTgtctttgtttgaaaaataaata
gcaATTCAATAGGAAATTTAAAGAGAAAGATTTAAAATGGAAtagatttc
taaaaaagaaataaacgtAGTTAGTTATGCTCCAAATAATGGACCTTTGT
CGTTTCAAAACTGCTTTTTGTGTGAAGTCATTCCCTTCATCAATAGAATA
AACAGGTTTTTGTTCAAGTAGGATTTCAAAAGAATTAACATAACACAATT
TATCTGCCCTTCATGGTAAACAATTTATTTTCGATGTTAAGAAACAGGTG
TTCTTCACTAATCCTCTAGAAAAAcgaaacaaaataatcataaaaGGTAT
ATGATATTGTTATGTAACATTTTGTAAAGCAAAAAAATGGATACCATAAA
AATCGCTTATCTTCACTTTAGAGTTTTTGGCTATCAAGCTTTCAATCTTT
CATTTCTGTGTGTCGGTTTCTTTTGTACATTGGAGTTTGGAAAGCAAAAT
AAGtaaagtattttttatttaaaacaatGGTATTTCCCAATGATCTTTTC
GGACTTTAATGAGATATTTACTTCTCGTTTCATTCAGGATGGAGTTCTTC
CACCAGTTCTTTATGTACAAATGGATAATTGCTGGAGAGAgaataaaaat
cagtttttattAGCCTTTTTTGCGTTTTTGGTGTTAAAAAGAATCGTTAA
AAAGGTATATAAATACAACAATACTCATCAAGACTTGAATATAGTTTAAT
TAATTAATGCCTAATtaatgaagaaaagaaaaccAATTACTATAAAATTA
CTGTAAAAAGTTACAGTCGGCAAATGGTACCGAAATGATATCAACATTTT
AGTTTCTGCTCGTAAATTCTTAAAACGCACCGTTTATACCAATTTAAACT
TATGCATAAAATGTTCTTGAGCAAATAAAAAGATGATGTGTTACAAAAGA
ATGTATCCTTTGGttgaatgaaaataaacatATTGATTCGACATTAGGTT
CGTCTTTCTTACTTGCTTGTTGGACATACCCACGAAGATATCGATAGTGT
aaggaaattattttcataatttttcctCTTCAtcaatttgttttaatttt
cttccaaaatagAAAAGACTTTTGCATTTGTCGATTTAAGTTATAGGCGA
TGGACGTACAAAACTTAATctctttttatacatttttaatCTTATCAGAC
ATTCAGTAACATTTCAACGACCTTAAACAAGAAAGACGTATTCACAATTG
ATCACCTGCTTCAAACGATTAAGGAATCCTTTCAGAAACAAAACACGAGT
GTTTCTTTACTGAAATATGTATTCAATTACCGGGACTGGTTTATGCCCAA
CATAAGAACACCGTCTCATCACACTGAGCCGCACGCTTACAAGTTTGAGC
TAGTCAACGAGGAAGTTGACTTGTCTTTTAAACGTTTCGCAATGGATCCA
GAATGGACCCAACTCAAGCCAGCACTCCTTTCGCATCTACCAACTGGACC
CATTCCCTTGGTACGGTTTAGTTGGAGAAAACAACTTCCAGTAGAcgaga
ttgaagaaaaaatacaaTCTTGCTCTGTGAAATTGCCCCATCAATCAATG
ATATGGTGGGGTAATTTCACCGACAATCTACGAAAGGAACAAATGTAAGA
GTCTCCTTTCTTCAAAAGTATGGAAAATTGAGCTAAAAACAGTATTTATC
AGTCTAAACTCGTAAACTCGAAATTTTTAGTCAATGATTCCCGTTCTGGT
cgattttattgttttaaaaagcacgtgtttccatttttttaattgaaatc
aatttttggaatcAATTCTTTTCCAAGGAAATGGAGTGAAGCCAGTGCTG
CAACTCTGATATCAGATGGTGGATGCTTTTTGAGTTATTTGAAACCTTAC
GCAGATGTTGTGCCGTTCTCAAAAGTATGTGCATAAACATTTTAATGtat
ctttttcaaaagtaaagaaaagagaagaaaatttaatagaattcatttaa
attttaatcaaatatCTCTTAGATGTCAGAGGACGACGCAAGGAGAAACG
AGCATATAGATATGCTCATGGAAAAGTCACAAAGGACTCCGCGTGTAAGG
ATTTGATTAAAGAATTATTTGTAATAAAGCAATTATGTTATCTCTAATTG
AATAGAAAAGTAGAAGAAGAATAAGTGTATTTCAATtgaatttatttcaa
ttttagacGGCGATTTCAAAGCATTCCGAGCGCGAGAagccaaagaaaaa
gaagaagaaaaatcccACTGAAACGGCAAACGAAAACAAAACGAACAAAa
cgaacaaaaagaaaaaaaacaatgaaacggCAAAcgcaaacaaaacaaac
aaaaagaaaaacaacaaaaacgaaaAGGATCCGCTCTCAAAAGCAAAGGC
ACGGGTCAAGGCAAAAAGGGCTTTAAAAGTCAAGTCCAGAAATGTAATAG
CCGGAAAAGGAGCAGAAAAAAACGTTATGAATGTTAGCTTATGAAATATG
TTGCacgtttttatttcaaaggaaCCATGAAATATGGAATGAACCTCGAC
TGTTctacattttctcaaaatttcctatCCATCACAAGCTCGGAATGAAT
TTCCACCAAAGCTGTATCATCTTTTTCTATATcgataaaaaggaaaaata
aaacagaaaactTTTACATGTTTTAACCTCGGTactattcttaaattgtt
ctaatTTTTTGCNTCTTGGGCATTATGatatttagtgacgtggtggtata
accaagaaacttaaaaatccttttagtaccacgacgtactaaaataccaa
aaaggcgGTATCCAGACTAAAAAATCAgaacttttgagaaaaatggtcta
gagaagaaaaaaattgtcctcaGAAGACCAAAATTGGGTGGTCTCTGTGC
CAAAACATCCccaaaaattttattacatgggcAATAAAAGACCATTCCTC
CAAAATGGGGTGATAGTATGCAAAAGATTCTCGAGAACCCTTCTAGTACT
CacatatgtctgagattttggtactgacccccccccctgtttccGCTGGA
ATTCGAATCGGCGAAAGTTAACTGTATATTGGTCAAACTTTTTACACTTT
TAGCATGCTTGGATTCGAAATACAGAAGTACAGTACAGAGAAAGTTCTAC
GGATACTCTTACTGCATGGTTCATTTTAAAATAGTGATTGAAAGATTATG
ATTTAAATTATATTTGGCCCTAGAGGGGGATTAGAGATATGTTAATCCTA
ACCCTAAATTACAAGCTATCATGTTATCAGAGATCTAGAAAAGAAGATTC
CCTGAGTCTGCCCAAGTTATCGAGGCCATGTGCCCATATACTCTTATGGT
AAGTTCCCAAAAATCATGGAAATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00041847-exon-sc0003049-1491911889:7295..7700 | TCONS_00041847-exon-sc0003049-1491911889:7295..7700 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1510915933:7295..7700 | TCONS_00041847-exon-sc0003049-1510915933:7295..7700 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1575043694:7295..7700 | TCONS_00041847-exon-sc0003049-1575043694:7295..7700 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1491911889:7998..8278 | TCONS_00041847-exon-sc0003049-1491911889:7998..8278 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1510915933:7998..8278 | TCONS_00041847-exon-sc0003049-1510915933:7998..8278 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1575043694:7998..8278 | TCONS_00041847-exon-sc0003049-1575043694:7998..8278 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1491911889:8550..8637 | TCONS_00041847-exon-sc0003049-1491911889:8550..8637 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1510915933:8550..8637 | TCONS_00041847-exon-sc0003049-1510915933:8550..8637 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1575043694:8550..8637 | TCONS_00041847-exon-sc0003049-1575043694:8550..8637 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1491911889:8762..8905 | TCONS_00041847-exon-sc0003049-1491911889:8762..8905 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1510915933:8762..8905 | TCONS_00041847-exon-sc0003049-1510915933:8762..8905 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1575043694:8762..8905 | TCONS_00041847-exon-sc0003049-1575043694:8762..8905 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1491911889:13417..13488 | TCONS_00041847-exon-sc0003049-1491911889:13417..13488 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1510915933:13417..13488 | TCONS_00041847-exon-sc0003049-1510915933:13417..13488 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1575043694:13417..13488 | TCONS_00041847-exon-sc0003049-1575043694:13417..13488 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1491911889:13601..14771 | TCONS_00041847-exon-sc0003049-1491911889:13601..14771 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1510915933:13601..14771 | TCONS_00041847-exon-sc0003049-1510915933:13601..14771 | Clytia hemisphaerica | exon |
| TCONS_00041847-exon-sc0003049-1575043694:13601..14771 | TCONS_00041847-exon-sc0003049-1575043694:13601..14771 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0003049 | supercontig | sc0003049:7295..14771 + |
Blast
The following BLAST results are available for this feature:
|