TCONS_00041851 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041851
Unique NameTCONS_00041851
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041851 ID=TCONS_00041851|Name=TCONS_00041851|organism=Clytia hemisphaerica|type=transcript|length=2809bp
TTTgtctttgtttgaaaaataaatagcaATTCAATAGGAAATTTAAAGAG
AAAGATTTAAAATGGAAtagatttctaaaaaagaaataaacgtAGTTAGT
TATGCTCCAAATAATGGACCTTTGTCGTTTCAAAACTGCTTTTTGTGTGA
AGTCATTCCCTTCATCAATAGAATAAACAGGTTTTTGTTCAAGTAGGATT
TCAAAAGAATTAACATAACACAATTTATCTGCCCTTCATGGTAAACAATT
TATTTTCGATGTTAAGAAACAGGTGTTCTTCACTAATCCTCTAGAAAAAc
gaaacaaaataatcataaaaGGTATATGATATTGTTATGTAACATTTTGT
AAAGCAAAAAAATGGATACCATAAAAATCGCTTATCTTCACTTTAGAGTT
TTTGGCTATCAAGCTTTCAATCTTTCATTTCTGTGTGTCGGTTTCTTTTG
TACATTGGAGTTTGGAAAGCAAAATAAGtaaagtattttttatttaaaac
aatGGTATTTCCCAATGATCTTTTCGGACTTTAATGAGATATTTACTTCT
CGTTTCATTCAGGATGGAGTTCTTCCACCAGTTCTTTATGTACAAATGGA
TAATTGCTGGAGAGAgaataaaaatcagtttttattAGCCTTTTTTGCGT
TTTTGGTGTTAAAAAGAATCGTTAAAAAGGTATATAAATACAACAATACT
CATCAAGACTTGAATATAGTTTAATTAATTAATGCCTAATtaatgaagaa
aagaaaaccAATTACTATAAAATTACTGTAAAAAGTTACAGTCGGCAAAT
GGTACCGAAATGATATCAACATTTTAGTTTCTGCTCGTAAATTCTTAAAA
CGCACCGTTTATACCAATTTAAACTTATGCATAAAATGTTCTTGAGCAAA
TAAAAAGATGATGTGTTACAAAAGAATGTATCCTTTGGttgaatgaaaat
aaacatATTGATTCGACATTAGGTTCGTCTTTCTTACTTGCTTGTTGGAC
ATACCCACGAAGATATCGATAGTACATTCAGTAACATTTCAACGACCTTA
AACAAGAAAGACGTATTCACAATTGATCACCTGCTTCAAACGATTAAGGA
ATCCTTTCAGAAACAAAACACGAGTGTTTCTTTACTGAAATATGTATTCA
ATTACCGGGACTGGTTTATGCCCAACATAAGAACACCGTCTCATCACACT
GAGCCGCACGCTTACAAGTTTGAGCTAGTCAACGAGGAAGTTGACTTGTC
TTTTAAACGTTTCGCAATGGATCCAGAATGGACCCAACTCAAGCCAGCAC
TCCTTTCGCATCTACCAACTGGACCCATTCCCTTGGTACGGTTTAGTTGG
AGAAAACAACTTCCAGTAGAcgagattgaagaaaaaatacaaTCTTGCTC
TGTGAAATTGCCCCATCAATCAATGATATGGTGGGGTAATTTCACCGACA
ATCTACGAAAGGAACAAATGAAATGGAGTGAAGCCAGTGCTGCAACTCTG
ATATCAGATGGTGGATGCTTTTTGAGTTATTTGAAACCTTACGCAGATGT
TGTGCCGTTCTCAAAAATGTCAGAGGACGACGCAAGGAGAAACGAGCATA
TAGATATGCTCATGGAAAAGTCACAAAGGACTCCGCGTacGGCGATTTCA
AAGCATTCCGAGCGCGAGAagccaaagaaaaagaagaagaaaaatcccAC
TGAAACGGCAAACGAAAACAAAACGAACAAAacgaacaaaaagaaaaaaa
acaatgaaacggCAAAcgcaaacaaaacaaacaaaaagaaaaacaacaaa
aacgaaaAGGATCCGCTCTCAAAAGCAAAGGCACGGGTCAAGGCAAAAAG
GGCTTTAAAAGTCAAGTCCAGAAATGTAATAGCCGGAAAAGGAGCAGAAA
AAAACGTTATGAATGTTAGCTTATGAAATATGTTGCacgtttttatttca
aaggaaCCATGAAATATGGAATGAACCTCGACTGTTctacattttctcaa
aatttcctatCCATCACAAGCTCGGAATGAATTTCCACCAAAGCTGTATC
ATCTTTTTCTATATcgataaaaaggaaaaataaaacagaaaactTTTACA
TGTTTTAACCTCGGTactattcttaaattgttctaatTTTTTGCNTCTTG
GGCATTATGatatttagtgacgtggtggtataaccaagaaacttaaaaat
ccttttagtaccacgacgtactaaaataccaaaaaggcgGTATCCAGACT
AAAAAATCAgaacttttgagaaaaatggtctagagaagaaaaaaattgtc
ctcaGAAGACCAAAATTGGGTGGTCTCTGTGCCAAAACATCCccaaaaat
tttattacatgggcAATAAAAGACCATTCCTCCAAAATGGGGTGATAGTA
TGCAAAAGATTCTCGAGAACCCTTCTAGTACTCacatatgtctgagattt
tggtactgacccccccccctgtttccGCTGGAATTCGAATCGGCGAAAGT
TAACTGTATATTGGTCAAACTTTTTACACTTTTAGCATGCTTGGATTCGA
AATACAGAAGTACAGTACAGAGAAAGTTCTACGGATACTCTTACTGCATG
GTTCATTTTAAAATAGTGATTGAAAGATTATGATTTAAATTATATTTGGC
CCTAGAGGGGGATTAGAGATATGTTAATCCTAACCCTAAATTACAAGCTA
TCATGTTATCAGAGATCTAGAAAAGAAGATTCCCTGAGTCTGCCCAAGTT
ATCGAGGCCATGTGCCCATATACTCTTATGGTAAGTTCCCAAAAATCATG
GAAATTTTC
Run BLAST on NCBI

transcript from alignment at sc0003049:11420..14771+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041851 ID=TCONS_00041851|Name=TCONS_00041851|organism=Clytia hemisphaerica|type=transcript|length=3352bp|location=Sequence derived from alignment at sc0003049:11420..14771+ (Clytia hemisphaerica)
TTTgtctttgtttgaaaaataaatagcaATTCAATAGGAAATTTAAAGAG
AAAGATTTAAAATGGAAtagatttctaaaaaagaaataaacgtAGTTAGT
TATGCTCCAAATAATGGACCTTTGTCGTTTCAAAACTGCTTTTTGTGTGA
AGTCATTCCCTTCATCAATAGAATAAACAGGTTTTTGTTCAAGTAGGATT
TCAAAAGAATTAACATAACACAATTTATCTGCCCTTCATGGTAAACAATT
TATTTTCGATGTTAAGAAACAGGTGTTCTTCACTAATCCTCTAGAAAAAc
gaaacaaaataatcataaaaGGTATATGATATTGTTATGTAACATTTTGT
AAAGCAAAAAAATGGATACCATAAAAATCGCTTATCTTCACTTTAGAGTT
TTTGGCTATCAAGCTTTCAATCTTTCATTTCTGTGTGTCGGTTTCTTTTG
TACATTGGAGTTTGGAAAGCAAAATAAGtaaagtattttttatttaaaac
aatGGTATTTCCCAATGATCTTTTCGGACTTTAATGAGATATTTACTTCT
CGTTTCATTCAGGATGGAGTTCTTCCACCAGTTCTTTATGTACAAATGGA
TAATTGCTGGAGAGAgaataaaaatcagtttttattAGCCTTTTTTGCGT
TTTTGGTGTTAAAAAGAATCGTTAAAAAGGTATATAAATACAACAATACT
CATCAAGACTTGAATATAGTTTAATTAATTAATGCCTAATtaatgaagaa
aagaaaaccAATTACTATAAAATTACTGTAAAAAGTTACAGTCGGCAAAT
GGTACCGAAATGATATCAACATTTTAGTTTCTGCTCGTAAATTCTTAAAA
CGCACCGTTTATACCAATTTAAACTTATGCATAAAATGTTCTTGAGCAAA
TAAAAAGATGATGTGTTACAAAAGAATGTATCCTTTGGttgaatgaaaat
aaacatATTGATTCGACATTAGGTTCGTCTTTCTTACTTGCTTGTTGGAC
ATACCCACGAAGATATCGATAGTGTaaggaaattattttcataatttttc
ctCTTCAtcaatttgttttaattttcttccaaaatagAAAAGACTTTTGC
ATTTGTCGATTTAAGTTATAGGCGATGGACGTACAAAACTTAATctcttt
ttatacatttttaatCTTATCAGACATTCAGTAACATTTCAACGACCTTA
AACAAGAAAGACGTATTCACAATTGATCACCTGCTTCAAACGATTAAGGA
ATCCTTTCAGAAACAAAACACGAGTGTTTCTTTACTGAAATATGTATTCA
ATTACCGGGACTGGTTTATGCCCAACATAAGAACACCGTCTCATCACACT
GAGCCGCACGCTTACAAGTTTGAGCTAGTCAACGAGGAAGTTGACTTGTC
TTTTAAACGTTTCGCAATGGATCCAGAATGGACCCAACTCAAGCCAGCAC
TCCTTTCGCATCTACCAACTGGACCCATTCCCTTGGTACGGTTTAGTTGG
AGAAAACAACTTCCAGTAGAcgagattgaagaaaaaatacaaTCTTGCTC
TGTGAAATTGCCCCATCAATCAATGATATGGTGGGGTAATTTCACCGACA
ATCTACGAAAGGAACAAATGTAAGAGTCTCCTTTCTTCAAAAGTATGGAA
AATTGAGCTAAAAACAGTATTTATCAGTCTAAACTCGTAAACTCGAAATT
TTTAGTCAATGATTCCCGTTCTGGTcgattttattgttttaaaaagcacg
tgtttccatttttttaattgaaatcaatttttggaatcAATTCTTTTCCA
AGGAAATGGAGTGAAGCCAGTGCTGCAACTCTGATATCAGATGGTGGATG
CTTTTTGAGTTATTTGAAACCTTACGCAGATGTTGTGCCGTTCTCAAAAG
TATGTGCATAAACATTTTAATGtatctttttcaaaagtaaagaaaagaga
agaaaatttaatagaattcatttaaattttaatcaaatatCTCTTAGATG
TCAGAGGACGACGCAAGGAGAAACGAGCATATAGATATGCTCATGGAAAA
GTCACAAAGGACTCCGCGTGTAAGGATTTGATTAAAGAATTATTTGTAAT
AAAGCAATTATGTTATCTCTAATTGAATAGAAAAGTAGAAGAAGAATAAG
TGTATTTCAATtgaatttatttcaattttagacGGCGATTTCAAAGCATT
CCGAGCGCGAGAagccaaagaaaaagaagaagaaaaatcccACTGAAACG
GCAAACGAAAACAAAACGAACAAAacgaacaaaaagaaaaaaaacaatga
aacggCAAAcgcaaacaaaacaaacaaaaagaaaaacaacaaaaacgaaa
AGGATCCGCTCTCAAAAGCAAAGGCACGGGTCAAGGCAAAAAGGGCTTTA
AAAGTCAAGTCCAGAAATGTAATAGCCGGAAAAGGAGCAGAAAAAAACGT
TATGAATGTTAGCTTATGAAATATGTTGCacgtttttatttcaaaggaaC
CATGAAATATGGAATGAACCTCGACTGTTctacattttctcaaaatttcc
tatCCATCACAAGCTCGGAATGAATTTCCACCAAAGCTGTATCATCTTTT
TCTATATcgataaaaaggaaaaataaaacagaaaactTTTACATGTTTTA
ACCTCGGTactattcttaaattgttctaatTTTTTGCNTCTTGGGCATTA
TGatatttagtgacgtggtggtataaccaagaaacttaaaaatcctttta
gtaccacgacgtactaaaataccaaaaaggcgGTATCCAGACTAAAAAAT
CAgaacttttgagaaaaatggtctagagaagaaaaaaattgtcctcaGAA
GACCAAAATTGGGTGGTCTCTGTGCCAAAACATCCccaaaaattttatta
catgggcAATAAAAGACCATTCCTCCAAAATGGGGTGATAGTATGCAAAA
GATTCTCGAGAACCCTTCTAGTACTCacatatgtctgagattttggtact
gacccccccccctgtttccGCTGGAATTCGAATCGGCGAAAGTTAACTGT
ATATTGGTCAAACTTTTTACACTTTTAGCATGCTTGGATTCGAAATACAG
AAGTACAGTACAGAGAAAGTTCTACGGATACTCTTACTGCATGGTTCATT
TTAAAATAGTGATTGAAAGATTATGATTTAAATTATATTTGGCCCTAGAG
GGGGATTAGAGATATGTTAATCCTAACCCTAAATTACAAGCTATCATGTT
ATCAGAGATCTAGAAAAGAAGATTCCCTGAGTCTGCCCAAGTTATCGAGG
CCATGTGCCCATATACTCTTATGGTAAGTTCCCAAAAATCATGGAAATTT
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025753XLOC_025753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041851-exon-sc0003049-1491911889:11420..12442TCONS_00041851-exon-sc0003049-1491911889:11420..12442Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1510915933:11420..12442TCONS_00041851-exon-sc0003049-1510915933:11420..12442Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1575043694:11420..12442TCONS_00041851-exon-sc0003049-1575043694:11420..12442Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1491911889:12593..13038TCONS_00041851-exon-sc0003049-1491911889:12593..13038Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1510915933:12593..13038TCONS_00041851-exon-sc0003049-1510915933:12593..13038Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1575043694:12593..13038TCONS_00041851-exon-sc0003049-1575043694:12593..13038Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1491911889:13222..13318TCONS_00041851-exon-sc0003049-1491911889:13222..13318Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1510915933:13222..13318TCONS_00041851-exon-sc0003049-1510915933:13222..13318Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1575043694:13222..13318TCONS_00041851-exon-sc0003049-1575043694:13222..13318Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1491911889:13417..13488TCONS_00041851-exon-sc0003049-1491911889:13417..13488Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1510915933:13417..13488TCONS_00041851-exon-sc0003049-1510915933:13417..13488Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1575043694:13417..13488TCONS_00041851-exon-sc0003049-1575043694:13417..13488Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1491911889:13601..14771TCONS_00041851-exon-sc0003049-1491911889:13601..14771Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1510915933:13601..14771TCONS_00041851-exon-sc0003049-1510915933:13601..14771Clytia hemisphaericaexon
TCONS_00041851-exon-sc0003049-1575043694:13601..14771TCONS_00041851-exon-sc0003049-1575043694:13601..14771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003049supercontigsc0003049:11420..14771 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186572	0.354229	0.103653	0	0.111325	0.228536	0.118288	0	0.107393	0.17246	0	0.196583	0.0658378	0.060549	0.113802	0.333582	0.377735	0.422008	0	0.64885	1.10246	1.18207	0.416499	0.923116	0.206097	0.897275	0	0.0906083	0.231306	0.313742
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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