TCONS_00041848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041848
Unique NameTCONS_00041848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041848 ID=TCONS_00041848|Name=TCONS_00041848|organism=Clytia hemisphaerica|type=transcript|length=1358bp
CAGCAAAATTTTAATAAAAGATTCCTTTCAAATTTGTAAATAAAAGGAAG
AAAAAAAtcttgctccacatttttctttattcattacaaaagattctatt
tatttcaatctgctgaatcaacatacattatgactatgtaaaaggtcaat
ggctttaacgaaaaaacctttttcaccTAGGACccattttatgatatttt
tttttgaaatggtAAGATGGAAACAAGCGAAGAtaagaataaaaatttga
tgGCAGCAAAAATACCTCGGAAGAAGCAGAGACTGAATATCGAAAAAGTT
GCGAATGATTTAGAAGAATTTAAACAGAACAGTTGCtgtgaaagaaaatg
tcacgaAGGCTTTTCTGCGTTTCAAGTGACTAGAATAAGGGAGCAATTCT
GGGAGAAAGACGAAGAGCAACAAAATACGTTTATCATAAACTTTTTGAGA
TCGCAAAGATTTTCTCACGCTTTGGTGTTTCATATTGATCGAGTTGTCTG
ccaaaaattttggtttttttgttATGGCATATCAAAGTCTAGATTCTATC
GAAAACGCAATGCCCTTCTAAAAGGCCACAAAGATGGGGCAACAGAGCGA
AAGGGAGCAAAACAATGCAGCAGCGAATATCATCATGCTGTTTTATGGAT
AAAGCGATTCGCTGATGATTGTGGAGATGCTCCGCCGGACCGGGATCCTG
ATTCTCGGGTCATCCCAGCCTGTTTTACCAAAAGAGCTGTTTACAAGACA
TATAAAGAAGAAATTCAATTACAGAACACGAGATTCACGAAGTGTGGCAT
ATGCACCCTAATCAAAGACATAAAAAATTCAACCAAAGACAAGGATTTGA
AAAATAAAATGTCCTTAATACGAAAATTGCATAACGAACAACAAATGGGT
GAAAGAGCAAAATACAAGGTCCATCAGACTAAAGCCAGAAATAATCCTGA
TCGATACGCCAGTATTATCATCGATGGAATGGATCAGAACAAAACATCTC
TGCCTCATTTTTTCACCCTTTCTAAGGTCTGTTttacactttttgataaa
agatcaGTTTAACCAAATCTGACTCGAGAGTACAaacatacacccctgtc
tcagtgtcAGTGTgggatattttttttatatctaaCGGGGTTATCAAAAA
CGGACTTTTTCCACTGGGGATACGAAATTATGATTGTTCTTTGTTCGAAA
TATTGGTGGGGATGAGAAATTTAAGTAGATCAAAGtttagtgggaatata
aagatttttacgtttttcaatGGGGAATTTCTATACTATTTTTACACTGG
GACGACTTTTAGTAGAAGTCGGAAAATTACCACCCTTAAAACATCTGTAA
TTaaagaa
Run BLAST on NCBI

transcript from alignment at sc0003049:7440..10921+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041848 ID=TCONS_00041848|Name=TCONS_00041848|organism=Clytia hemisphaerica|type=transcript|length=3482bp|location=Sequence derived from alignment at sc0003049:7440..10921+ (Clytia hemisphaerica)
CAGCAAAATTTTAATAAAAGATTCCTTTCAAATTTGTAAATAAAAGGAAG
AAAAAAAtcttgctccacatttttctttattcattacaaaagattctatt
tatttcaatctgctgaatcaacatacattatgactatgtaaaaggtcaat
ggctttaacgaaaaaacctttttcaccTAGGACccattttatgatatttt
tttttgaaatggtAAGATGGAAACAAGCGAAGAtaagaataaaaatttga
tgGCAGCAAAAGTAAGTTAATCTTTTATTATTACGTTTTTATGCCCGGCA
ATTAACTATCTATCTGATGCCTTCTTTCGTATAGTTTAGCATAGTTTAGT
AGAATTTAGAATTTATCCCGTATGAATTCTCAAATTTCTAATATATACAG
AGAAAAACATCCCAAGCGAGATCGAACCAAACAGAAAAGTTTCAATGAAT
CGTATAAATTTTAGtaaagattttaaagattataGAGAAAAATTGCTTaa
caattgaaaaaaatgtaagattACTTTGGGTAATTTTCTGTTTTATTCAA
CCTTCTAGATACCTCGGAAGAAGCAGAGACTGAATATCGAAAAAGTTGCG
AATGATTTAGAAGAATTTAAACAGAACAGTTGCtgtgaaagaaaatgtca
cgaAGGCTTTTCTGCGTTTCAAGTGACTAGAATAAGGGAGCAATTCTGGG
AGAAAGACGAAGAGCAACAAAATACGTTTATCATAAACTTTTTGAGATCG
CAAAGATTTTCTCACGCTTTGGTGTTTCATATTGATCGAGTTGTCTGcca
aaaattttggtttttttgttATGGCATATCAAAGTCTAGGTAACTTTccc
attttatatttttaaagtgaaatatttttataagaaaagtgtttttttgG
TTTCATGATANTCTTTACTTgaggatttttttatgaaatttgactttgaa
aagATTTAAGATAACATTATTCTTAGGACATTCTTAACTTTtaggccaat
ttcatcatgaatattcttataaagtatattcttataaaaaaagcgtgtat
aaagCTTTAACATGCCTCGTTTCAATCTTATCGATTTTCCATTACGGTTA
CTCTTTTTAGATTCTATCGAAAACGCAATGCCCTTCTAAAAGGCCACAAA
GATGGGGCAACAGAGCGAAAGGGAGCAAAACAATGCAGCAGCGAATATGT
AAGtattgcagatttttcagatttcgtTATTATCATTGTTGCATGTTGTT
GTTTTAGCTACTAAGAGAAAAGGTCCTTTCCCATGTTCTATTTtacaaag
aaatttattttatgcATTTTAGCATCATGCTGTTTTATGGATAAAGCGAT
TCGCTGATGATTGTGGAGATGCTCCGCCGGACCGGGATCCTGATTCTCGG
GTCATCCCAGCCTGTTTTACCAAAAGAGCTGTTTACAAGACATATAAAGA
AGAAATTCAATTACAGGTTATTCAAAATGGAATTAAATCTATCATTCAAA
CAAGTTTCTTTAAAGCTTGTTCCTCACTTGTTGAAAAANAAATTACAGGT
TATTCAAAATGGAATTAAATCTATCATTCAAACAAGTGTCTTTAAAGCCT
GTTCCTCACTTGTTGAAAAAATCTAACATTAGACGCGGATATTTAATTCT
GTTCACATTGCGGTGCCTTTGAACTTTAGATGCGCGGAACAAATAAAGGA
ATAAATCTCTAGGGAGTCTCGTTCAAactctacacgcttttttataagag
cagttcttaataaaaaaaacgtgtattcaatttttctctGCGTCCTTTCT
GCCATGAATATAGCTTTATTTTTGCACCTATCCTGCTTTGTTTTGCCAGT
TTAATTAAAGTTTCAAGTTGAAAATTAATCAgcaaattttaaaagatttc
agaGGTTTccggatttttttaattttctattgttATCTTGAATCTGCCAC
GACCTTGTGACGTTAAACTGTGTTGTTGGAACAATCACAGTATTCCTTAT
TATGGGATAATAGAGGGGGCAGCTGTGAATTTCAAGCAAAAGCAATTTTT
GCCTCTATTCTTTAGTCTATAGTCCTTCTGTTATGATCATAAATCATAAT
TAATCAAATATAACTTTAATACTTTTCATCCAAAAGAACACGAGATTCAC
GAAGTGTGGCATATGCACCCTAATCAAAGACATAAAAAATTCAACCAAAG
ACAAGGATTTGAAAAATAAAATGTCCTTAATACGAAAATTGCATAACGAA
CAACAAATGTAAGTTGGTTGATTTATGTTTGTAAAATGCAAGCACTTTCT
TtgttataaaatgaaaatccttAGCTGTTCATAATGTCTAGACAGCCTTT
CCAGCAGAGACACGGTGTATCAgtcgaaagcagccggcgaggcgaccttt
tttttcgatgtgttctgagagtatatttcagctagaaattttgatctgtt
ctgatcagaacttcgaaaattaatcagctagaagtaatgatgtgttctga
tgagacaggggtataatcaaattcatctaacgtgttcttgttgtctagat
aaccctagaaagcttcagaacacatcttttaaggagacaggggtataacc
aagaaaaaatttatgtAATCTTGTTacctagtaaccctagaaattttcag
aacacatctttcgtagagaaaaacaaatatctttcaggtttatcttggca
aactgtttttcctagattttagaacacatcaaaccataaagtaatgataa
gtttagggagacaaatagtgtgataaaggtttcctagaaataagaacacg
tcatttataaaaagaattgaaaggtcataacatttggtctcctagaaaat
aagaacacatatttctaaaaaatctctccgccggctgcttctgtatCAGT
AAACAAGATTGTACTAAGAATATAATTAATacgaaaaatatatcattttg
agcatgaaattttgagagTGAACAACAGGAATTATTCCTGTTTACACCAA
TACAATTTTTGTATCCTTAGGGGTGAAAGAGCAAAATACAAGGTCCATCA
GACTAAAGCCAGAAATAATCCTGATCGATACGCCAGTATTATCATCGATG
GAATGGATCAGAACAAAACATCTCTGCCTCATTTTTTCACCCTTTCTAAG
GTCTGTTttacactttttgataaaagatcaGTTTAACCAAATCTGACTCG
AGAGTACAaacatacacccctgtctcagtgtcAGTGTgggatattttttt
tatatctaaCGGGGTTATCAAAAACGGACTTTTTCCACTGGGGATACGAA
ATTATGATTGTTCTTTGTTCGAAATATTGGTGGGGATGAGAAATTTAAGT
AGATCAAAGtttagtgggaatataaagatttttacgtttttcaatGGGGA
ATTTCTATACTATTTTTACACTGGGACGACTTTTAGTAGAAGTCGGAAAA
TTACCACCCTTAAAACATCTGTAATTaaagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025753XLOC_025753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041848-exon-sc0003049-1491911889:7440..7700TCONS_00041848-exon-sc0003049-1491911889:7440..7700Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1510915933:7440..7700TCONS_00041848-exon-sc0003049-1510915933:7440..7700Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1575043694:7440..7700TCONS_00041848-exon-sc0003049-1575043694:7440..7700Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1491911889:7998..8278TCONS_00041848-exon-sc0003049-1491911889:7998..8278Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1510915933:7998..8278TCONS_00041848-exon-sc0003049-1510915933:7998..8278Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1575043694:7998..8278TCONS_00041848-exon-sc0003049-1575043694:7998..8278Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1491911889:8550..8637TCONS_00041848-exon-sc0003049-1491911889:8550..8637Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1510915933:8550..8637TCONS_00041848-exon-sc0003049-1510915933:8550..8637Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1575043694:8550..8637TCONS_00041848-exon-sc0003049-1575043694:8550..8637Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1491911889:8762..8905TCONS_00041848-exon-sc0003049-1491911889:8762..8905Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1510915933:8762..8905TCONS_00041848-exon-sc0003049-1510915933:8762..8905Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1575043694:8762..8905TCONS_00041848-exon-sc0003049-1575043694:8762..8905Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1491911889:9576..9697TCONS_00041848-exon-sc0003049-1491911889:9576..9697Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1510915933:9576..9697TCONS_00041848-exon-sc0003049-1510915933:9576..9697Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1575043694:9576..9697TCONS_00041848-exon-sc0003049-1575043694:9576..9697Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1491911889:10460..10921TCONS_00041848-exon-sc0003049-1491911889:10460..10921Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1510915933:10460..10921TCONS_00041848-exon-sc0003049-1510915933:10460..10921Clytia hemisphaericaexon
TCONS_00041848-exon-sc0003049-1575043694:10460..10921TCONS_00041848-exon-sc0003049-1575043694:10460..10921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003049supercontigsc0003049:7440..10921 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.370861	0.142569	0.142845	0	0.496725	1.18761	0.871686	0.843337	0.649708	0.600572	1.67678	0.353223	0.173262	0.464351	0	0.498416	0	0.233061	0	0.592177	0.612524	0.927444	0.19025	0	0.831847	0.759861	0.166148	0	0.139099	0.334895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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