XLOC_023150 (gene) - C. hemisphaerica

Overview
NameXLOC_023150
Unique NameXLOC_023150
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001885:14234..18981+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_023150 ID=XLOC_023150|Name=XLOC_023150|organism=Clytia hemisphaerica|type=gene|length=4748bp|location=Sequence derived from alignment at sc0001885:14234..18981+ (Clytia hemisphaerica)
GAACACGCAAGGACGACACAACACAACATAAGAAAAGCATCAATACATAC
CgtaaaacaatcaaaacaaaatggctgcaaATGCTCTNGCATAAGAAAAG
CATCAAGACATACCgtaaaacaatcaaaacaaaatggctgcaaATGCTCT
TGATGGTGCTGGTCAAATCAtggataaaacaaaaaatattctagGTAAAT
ATAACTATAAGCTACCTgtagggaactaattttggtgagcAGCAATAACC
CTTAACAATTTTTAATTTGACGATAGAGATTTTACAACttgtaggcccaa
ttgtaaaattgatagGCTAAGTCCAataatttttggtaaaaaacttgtcc
ccaggtcccaaaaatcaaaatattttgtatgtTTTTGTATTTACATGTTT
ATACTGGTACAGTGAACACTCGTTAATTCGAACTTCCATTATTCGAggat
ctttctataattcgaacttttaATTCTTAGTCCCTCGTCAAAGGAAAGTc
gtaaaatactctctataatttcataattttttaattataattttGTTTAA
GTTTTGTTCTATCTATCTATAGGTAAATGGCAAGAGTTATCAGCAGGTAA
CGGAAGGCATAATTTAACCCTTGGAAATCCTggtaaaaatgacgtcatcc
tTTACGAAGAAAAAGTACGAAAAGGGAGTAGTATGTCACATGTGACACAT
GAATTTGaatatcaaaaaaattcaggtataaataaataaatgctTGAAAA
TAGACTCAACACAACATATTAACcaatattttcaatgttttgatgaattt
tacTAAATTTTAAGGCTGAAAAGCCGGAAGAACTGTTAATACTTTCCTTT
CGAATACACCTTTTTCCGATTAGCCGTTTCGTataaaaaatcactaaaat
ttcgagtaaacaaaccatcccattggctaaaagcaaaaacataaacaaaa
atatgTGCATAGTATGAGAAAAATGTGCTTTCTGTGCTCTTactctattt
ttttgtttatgtttttgcttttagccaatgggatggtttgtttactcaaa
attttggtgactttttagaCGAAGCAGCTAACCATAAAAAgtagtattgt
aatttttgcgaatttcacCGTTCGCCAAGCCTGAATTAGACCCCTGAAAG
CTCTGGAAAACATTTATGTTGGAAGTGTAGACTTGAGAGTCGTTTATAAT
AAAGTAATATTGGTGTTACATAATAATAAGAAAATCAtaacgggataata
tcagtttgtgtAATTCGTTCCTTCAATTAGTTTTGCTTAATTTCTGTtgt
gtctgaattagtcgtctacgCGTTtcttttgtataagaacaaactataag
aacataaggcttcgatggccaaaatattaaaaacaaattaaggacatttt
aaggcttcgcggactctaaaacacccgatttcttaggaaaatggacaaaa
ataatcagaaaacgatgaaaataagaacatgttaaccCTTTGACGAGGGT
TTTTCTGAGACAgtaaagaattttcttttttgtgaCAGGTGAAAGAATCA
CATCTGTCTTGGCGTATGATGAGTGGAGCGATGATACGGGCGGTGACGCC
CAAAGGATCAGTGGCGGAGTCAATCAAGACCATGTTACCATCAAAATCAA
ATCTCGATTTATGCGtggttttcatttcaaatttattgTTTACGGACAAA
AGTCTTGAGTAGCGATTAATTTATCTTTTGATACGTTACATATTTTTATA
ATAAGAGTAAACTTTTGTACCTAGGGGTTTCTTTTTTTACAGTAGTTTGA
CCCCCTAATTTCTTCTTATGTTATTCATATTTTTTGGcacattttttgaa
acatttaggTTTTATAGCTACatcctttttttaaaagatcatTTGAGCCG
TTCATTTGCTTAAAATCCAGTCATCTCAAGTTTTTGAATTGTtctcaaaa
caaaggaaccgctagatacaatccgtcgtcatgagcGCGGTGCGGTCTGG
ATGGGAAacaagtggcttcactttttcttgcctgggataGGTTAGaaatt
ctactctagcccttcgggttttaaaCTTAATAAATGTgactcattgagtt
tcaagctgAAAGCTATCGGCGAATCTTCAAGTTTTCTAAAACGatttgaa
gaaatttcaaaaaatttgcgccgcattttgaaacagattgaatctatcac
tttctttgttttaaacttttttcaaattccgACGGTAAATGTCagcgttt
gtatgaaaaccacgcgggCCGCACAACTTATGTAGAAAGTAAGTAGCTTC
AAATCCTACATAAAGGAGACATGACTCTAAATTTCGTCAAGACTTAATGG
GgtgggtaaaaaaaaaaaagctttcttGGAACTAAAATGACGCACAGACa
aacaggaaaattttcaacGATTCACTACATGAATATATGCACGTACAcat
ttatgaaaatgttttccagGAGTGTTTTTAATCCACCTTAAATATGTTGA
GTAAACCAAAACTGACAATTATGTTTGTTTATATTGAGATGATTTACTGT
ATgaatatacacgcttttttataagaaaacacttgaaatgaccaaaaaaa
tatatgctaagaatatcaccatcatggaattttgctactcaagcttaaga
atgccatttttagagtattttcaattagaaattgtcaattaccccatATA
GGgccactcctttcacaaaaataccattttatgCTTCGGACGTATGTACT
Atacatgttaaatctagtctgaattaggatccaaacataagaatgctgta
agaatattttaggatggtTTTCCCAAAATAGTTAAGaatatcaatgatga
aatggatttacactattcttataaaaaaaagtgtatgcaAACATTTATTA
AAATAGTTCCAGGAGTGTTTTTAATCCACCTTAAATCTGTTGAGTAAACA
AAAACTGACAATTATGTTTGTTTATATTGAGATGCTTGACGTACATAAAC
ATTCCAAGAAATTAACATTGTATATGCGCTTTGCTTATTGAAGTGCCATA
TAAATAGCCCTTCAAACATTTGAACTTTCAAACGAGTCAGACAAGAGAAC
AATAAAGGTGGAAAGTCGCAAAACTTCAGATCAGAGTTGGTATTCAAGTT
GAATCTCGCTAATACacttttctcgagatgcataaatttattgttgtcct
cgttttcaaacagatttcattgctataaaattatacatttaaaccaattt
aaattcccaaaaggcaaacatttactctaaaacaaaagtacttgaaattc
aaaatgtatcatgaggtgtaaacaacacaattatcattgtgaatttGTAA
TTTTagagcaatgaaatctgtttgaaaacgaggacaacaataaatttatg
catctcgagaaaagtgtattcgaactcgaacggggaataACATCCGTTCG
AAATACAGAGAGATTCGTGCTTGAGCCGGAACTTCTTGTTTGAGGCCCTG
ACGCATTAAAACAGCTTGGCAATCAACTCCTAGTAAAGAGATAAATTGCT
AACAATACAtaaaaaaaaatggctgaaCAGATATTCGCTGCTATAGCGAT
AATTGACAATGTTGAAAAAGTCATGGATAAAGCAAGTAAAATTCTAGGTA
AATGGCAagtatacgttttttataaacaggggtaaaccttgaaaaaattg
CGCACTATCTTGCTCGGTACCgtagaaaacaaaattttatgtagatttaa
CATACTCAGAGTATCCCAATGAGGCCCTTGGGGAAAACTTTAAGTAAAAT
CAAGCCTGAAGTTTACTCTTTTACCCTAAAATTGATAAGATACACTACAA
AAGGATAAATCATAAAAATTACGTCTTTTAAGTTTTgttctatctatcta
tttacACAGGTAAATGGCAAGAGTTATCAGCAGGTAATGGAAGACATAAT
TTAACCCTTGGAAATCCTggtaaaaatgacgtcattcttTACGAAGAAGA
AATACGAAAAGGGCACAATGCGGCATATGTAAAACATGAATTTGaatatc
aaaaaaattcaggtatatattttttataggaacaaactatataaaaacat
aaggcttcgatggctgaAATATTCAGAACATGtgaagaacatttaaaggc
tttatGGAGTCTAAAATACCCAGTTTCTTaggaaatttaacaaaaatgat
gaaattaagaacatttcaagaacatATTTAGGCAAATaactcttattaaa
aaaaagtgtaaagtATTTCCTCTTTTGTTGTCAAAGGTGAAAGAATCACA
TCTGTCTTGGCGTATGATGAGTGGGACGATGATACGGGCGGCGACGCCCA
TAGAATCAGTGGCGGGGTCGATCAAGACCATGTTACCATCAAAATCAAAT
CTCGTTTAATGCGtggttttcatttcaaatttattgTTTACGGACAAAAG
TCTTGAGTAGCGattaatttatatttttgatacgttgcatatttttataa
gaaagagtATTAAACTTTTGTACTTAGGGGTTTGGCTTATTTCACAGTAA
TTTAACCccaaattttttcttatgttattcatattttttggcacattttt
gaaacatttagGCTTTATAACTATAtccttttttaaaagatattttgagC
CGTTCATTTGCTTAAAATTCACTCATCTTAAGTTCTTAAATTGTTCCAGG
CCGCCTAGTCTATAATATATGATATGATGTaaaatcagtaaaataaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00038576TCONS_00038576Clytia hemisphaericatranscript
TCONS_00038577TCONS_00038577Clytia hemisphaericatranscript
TCONS_00038578TCONS_00038578Clytia hemisphaericatranscript
TCONS_00038579TCONS_00038579Clytia hemisphaericatranscript
TCONS_00038580TCONS_00038580Clytia hemisphaericatranscript
TCONS_00038581TCONS_00038581Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00038579-proteinTCONS_00038579-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001885supercontigsc0001885:14234..18981 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15	0.16	0.64	0.23	0.1	0.32	1.36	0.89	0.51	0.7	0	0.11	21.86	15.21	7.08	14.2	1.15	0.39	31.1	141.57	0	0	0.88	0.71	36.73	37.54	0.28	0.63	19.34	11.05