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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038576 ID=TCONS_00038576|Name=TCONS_00038576|organism=Clytia hemisphaerica|type=transcript|length=611bp
GAACACGCAAGGACGACACAACACAACATAAGAAAAGCATCAATACATAC
CgtaaaacaatcaaaacaaaatggctgcaaATGCTCTTGATGGTGCTGGT
CAAATCAtggataaaacaaaaaatattctagGTAAATGGCAAGAGTTATC
AGCAGGTAACGGAAGGCATAATTTAACCCTTGGAAATCCTggtaaaaatg
acgtcatcctTTACGAAGAAAAAGTACGAAAAGGGAGTAGTATGTCACAT
GTGACACATGAATTTGaatatcaaaaaaattcagGTGAAAGAATCACATC
TGTCTTGGCGTATGATGAGTGGAGCGATGATACGGGCGGTGACGCCCAAA
GGATCAGTGGCGGAGTCAATCAAGACCATGTTACCATCAAAATCAAATCT
CGATTTATGCGtggttttcatttcaaatttattgTTTACGGACAAAAGTC
TTGAGTAGCGATTAATTTATCTTTTGATACGTTACATATTTTTATAATAA
GAGTAAACTTTTGTACCTAGGGGTTTCTTTTTTTACAGTAGTTTGACCCC
CTAATTTCTTCTTATGTTATTCATATTTTTTGGcacattttttgaaacat
ttaggTTTTAT Run BLAST on NCBI transcript from alignment at sc0001885:14234..16098+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038576 ID=TCONS_00038576|Name=TCONS_00038576|organism=Clytia hemisphaerica|type=transcript|length=1865bp|location=Sequence derived from alignment at sc0001885:14234..16098+ (Clytia hemisphaerica)
GAACACGCAAGGACGACACAACACAACATAAGAAAAGCATCAATACATAC
CgtaaaacaatcaaaacaaaatggctgcaaATGCTCTNGCATAAGAAAAG
CATCAAGACATACCgtaaaacaatcaaaacaaaatggctgcaaATGCTCT
TGATGGTGCTGGTCAAATCAtggataaaacaaaaaatattctagGTAAAT
ATAACTATAAGCTACCTgtagggaactaattttggtgagcAGCAATAACC
CTTAACAATTTTTAATTTGACGATAGAGATTTTACAACttgtaggcccaa
ttgtaaaattgatagGCTAAGTCCAataatttttggtaaaaaacttgtcc
ccaggtcccaaaaatcaaaatattttgtatgtTTTTGTATTTACATGTTT
ATACTGGTACAGTGAACACTCGTTAATTCGAACTTCCATTATTCGAggat
ctttctataattcgaacttttaATTCTTAGTCCCTCGTCAAAGGAAAGTc
gtaaaatactctctataatttcataattttttaattataattttGTTTAA
GTTTTGTTCTATCTATCTATAGGTAAATGGCAAGAGTTATCAGCAGGTAA
CGGAAGGCATAATTTAACCCTTGGAAATCCTggtaaaaatgacgtcatcc
tTTACGAAGAAAAAGTACGAAAAGGGAGTAGTATGTCACATGTGACACAT
GAATTTGaatatcaaaaaaattcaggtataaataaataaatgctTGAAAA
TAGACTCAACACAACATATTAACcaatattttcaatgttttgatgaattt
tacTAAATTTTAAGGCTGAAAAGCCGGAAGAACTGTTAATACTTTCCTTT
CGAATACACCTTTTTCCGATTAGCCGTTTCGTataaaaaatcactaaaat
ttcgagtaaacaaaccatcccattggctaaaagcaaaaacataaacaaaa
atatgTGCATAGTATGAGAAAAATGTGCTTTCTGTGCTCTTactctattt
ttttgtttatgtttttgcttttagccaatgggatggtttgtttactcaaa
attttggtgactttttagaCGAAGCAGCTAACCATAAAAAgtagtattgt
aatttttgcgaatttcacCGTTCGCCAAGCCTGAATTAGACCCCTGAAAG
CTCTGGAAAACATTTATGTTGGAAGTGTAGACTTGAGAGTCGTTTATAAT
AAAGTAATATTGGTGTTACATAATAATAAGAAAATCAtaacgggataata
tcagtttgtgtAATTCGTTCCTTCAATTAGTTTTGCTTAATTTCTGTtgt
gtctgaattagtcgtctacgCGTTtcttttgtataagaacaaactataag
aacataaggcttcgatggccaaaatattaaaaacaaattaaggacatttt
aaggcttcgcggactctaaaacacccgatttcttaggaaaatggacaaaa
ataatcagaaaacgatgaaaataagaacatgttaaccCTTTGACGAGGGT
TTTTCTGAGACAgtaaagaattttcttttttgtgaCAGGTGAAAGAATCA
CATCTGTCTTGGCGTATGATGAGTGGAGCGATGATACGGGCGGTGACGCC
CAAAGGATCAGTGGCGGAGTCAATCAAGACCATGTTACCATCAAAATCAA
ATCTCGATTTATGCGtggttttcatttcaaatttattgTTTACGGACAAA
AGTCTTGAGTAGCGATTAATTTATCTTTTGATACGTTACATATTTTTATA
ATAAGAGTAAACTTTTGTACCTAGGGGTTTCTTTTTTTACAGTAGTTTGA
CCCCCTAATTTCTTCTTATGTTATTCATATTTTTTGGcacattttttgaa
acatttaggTTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038576-exon-sc0001885-1491911889:14234..14279 | TCONS_00038576-exon-sc0001885-1491911889:14234..14279 | Clytia hemisphaerica | exon |
| TCONS_00038576-exon-sc0001885-1510915933:14234..14279 | TCONS_00038576-exon-sc0001885-1510915933:14234..14279 | Clytia hemisphaerica | exon |
| TCONS_00038576-exon-sc0001885-1575043694:14234..14279 | TCONS_00038576-exon-sc0001885-1575043694:14234..14279 | Clytia hemisphaerica | exon |
| TCONS_00038576-exon-sc0001885-1491911889:14343..14427 | TCONS_00038576-exon-sc0001885-1491911889:14343..14427 | Clytia hemisphaerica | exon |
| TCONS_00038576-exon-sc0001885-1510915933:14343..14427 | TCONS_00038576-exon-sc0001885-1510915933:14343..14427 | Clytia hemisphaerica | exon |
| TCONS_00038576-exon-sc0001885-1575043694:14343..14427 | TCONS_00038576-exon-sc0001885-1575043694:14343..14427 | Clytia hemisphaerica | exon |
| TCONS_00038576-exon-sc0001885-1491911889:14806..14958 | TCONS_00038576-exon-sc0001885-1491911889:14806..14958 | Clytia hemisphaerica | exon |
| TCONS_00038576-exon-sc0001885-1510915933:14806..14958 | TCONS_00038576-exon-sc0001885-1510915933:14806..14958 | Clytia hemisphaerica | exon |
| TCONS_00038576-exon-sc0001885-1575043694:14806..14958 | TCONS_00038576-exon-sc0001885-1575043694:14806..14958 | Clytia hemisphaerica | exon |
| TCONS_00038576-exon-sc0001885-1491911889:15772..16098 | TCONS_00038576-exon-sc0001885-1491911889:15772..16098 | Clytia hemisphaerica | exon |
| TCONS_00038576-exon-sc0001885-1510915933:15772..16098 | TCONS_00038576-exon-sc0001885-1510915933:15772..16098 | Clytia hemisphaerica | exon |
| TCONS_00038576-exon-sc0001885-1575043694:15772..16098 | TCONS_00038576-exon-sc0001885-1575043694:15772..16098 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001885 | supercontig | sc0001885:14234..16098 + |
Blast
The following BLAST results are available for this feature:
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