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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038580 ID=TCONS_00038580|Name=TCONS_00038580|organism=Clytia hemisphaerica|type=transcript|length=556bp
ggtaaaaatgacgtcatcctTTACGAAGAAAAAGTACGAAAAGGGAGTAG
TATGTCACATGTGACACATGAATTTGaatatcaaaaaaattcagGTGAAA
GAATCACATCTGTCTTGGCGTATGATGAGTGGGACGATGATACGGGCGGC
GACGCCCATAGAATCAGTGGCGGGGTCGATCAAGACCATGTTACCATCAA
AATCAAATCTCGTTTAATGCGtggttttcatttcaaatttattgTTTACG
GACAAAAGTCTTGAGTAGCGattaatttatatttttgatacgttgcatat
ttttataagaaagagtATTAAACTTTTGTACTTAGGGGTTTGGCTTATTT
CACAGTAATTTAACCccaaattttttcttatgttattcatattttttggc
acatttttgaaacatttagGCTTTATAACTATAtccttttttaaaagata
ttttgagCCGTTCATTTGCTTAAAATTCACTCATCTTAAGTTCTTAAATT
GTTCCAGGCCGCCTAGTCTATAATATATGATATGATGTaaaatcagtaaa
ataaaa Run BLAST on NCBI transcript from alignment at sc0001885:14865..18981+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038580 ID=TCONS_00038580|Name=TCONS_00038580|organism=Clytia hemisphaerica|type=transcript|length=4117bp|location=Sequence derived from alignment at sc0001885:14865..18981+ (Clytia hemisphaerica)
ggtaaaaatgacgtcatcctTTACGAAGAAAAAGTACGAAAAGGGAGTAG
TATGTCACATGTGACACATGAATTTGaatatcaaaaaaattcaggtataa
ataaataaatgctTGAAAATAGACTCAACACAACATATTAACcaatattt
tcaatgttttgatgaattttacTAAATTTTAAGGCTGAAAAGCCGGAAGA
ACTGTTAATACTTTCCTTTCGAATACACCTTTTTCCGATTAGCCGTTTCG
Tataaaaaatcactaaaatttcgagtaaacaaaccatcccattggctaaa
agcaaaaacataaacaaaaatatgTGCATAGTATGAGAAAAATGTGCTTT
CTGTGCTCTTactctatttttttgtttatgtttttgcttttagccaatgg
gatggtttgtttactcaaaattttggtgactttttagaCGAAGCAGCTAA
CCATAAAAAgtagtattgtaatttttgcgaatttcacCGTTCGCCAAGCC
TGAATTAGACCCCTGAAAGCTCTGGAAAACATTTATGTTGGAAGTGTAGA
CTTGAGAGTCGTTTATAATAAAGTAATATTGGTGTTACATAATAATAAGA
AAATCAtaacgggataatatcagtttgtgtAATTCGTTCCTTCAATTAGT
TTTGCTTAATTTCTGTtgtgtctgaattagtcgtctacgCGTTtcttttg
tataagaacaaactataagaacataaggcttcgatggccaaaatattaaa
aacaaattaaggacattttaaggcttcgcggactctaaaacacccgattt
cttaggaaaatggacaaaaataatcagaaaacgatgaaaataagaacatg
ttaaccCTTTGACGAGGGTTTTTCTGAGACAgtaaagaattttctttttt
gtgaCAGGTGAAAGAATCACATCTGTCTTGGCGTATGATGAGTGGAGCGA
TGATACGGGCGGTGACGCCCAAAGGATCAGTGGCGGAGTCAATCAAGACC
ATGTTACCATCAAAATCAAATCTCGATTTATGCGtggttttcatttcaaa
tttattgTTTACGGACAAAAGTCTTGAGTAGCGATTAATTTATCTTTTGA
TACGTTACATATTTTTATAATAAGAGTAAACTTTTGTACCTAGGGGTTTC
TTTTTTTACAGTAGTTTGACCCCCTAATTTCTTCTTATGTTATTCATATT
TTTTGGcacattttttgaaacatttaggTTTTATAGCTACatcctttttt
taaaagatcatTTGAGCCGTTCATTTGCTTAAAATCCAGTCATCTCAAGT
TTTTGAATTGTtctcaaaacaaaggaaccgctagatacaatccgtcgtca
tgagcGCGGTGCGGTCTGGATGGGAAacaagtggcttcactttttcttgc
ctgggataGGTTAGaaattctactctagcccttcgggttttaaaCTTAAT
AAATGTgactcattgagtttcaagctgAAAGCTATCGGCGAATCTTCAAG
TTTTCTAAAACGatttgaagaaatttcaaaaaatttgcgccgcattttga
aacagattgaatctatcactttctttgttttaaacttttttcaaattccg
ACGGTAAATGTCagcgtttgtatgaaaaccacgcgggCCGCACAACTTAT
GTAGAAAGTAAGTAGCTTCAAATCCTACATAAAGGAGACATGACTCTAAA
TTTCGTCAAGACTTAATGGGgtgggtaaaaaaaaaaaagctttcttGGAA
CTAAAATGACGCACAGACaaacaggaaaattttcaacGATTCACTACATG
AATATATGCACGTACAcatttatgaaaatgttttccagGAGTGTTTTTAA
TCCACCTTAAATATGTTGAGTAAACCAAAACTGACAATTATGTTTGTTTA
TATTGAGATGATTTACTGTATgaatatacacgcttttttataagaaaaca
cttgaaatgaccaaaaaaatatatgctaagaatatcaccatcatggaatt
ttgctactcaagcttaagaatgccatttttagagtattttcaattagaaa
ttgtcaattaccccatATAGGgccactcctttcacaaaaataccatttta
tgCTTCGGACGTATGTACTAtacatgttaaatctagtctgaattaggatc
caaacataagaatgctgtaagaatattttaggatggtTTTCCCAAAATAG
TTAAGaatatcaatgatgaaatggatttacactattcttataaaaaaaag
tgtatgcaAACATTTATTAAAATAGTTCCAGGAGTGTTTTTAATCCACCT
TAAATCTGTTGAGTAAACAAAAACTGACAATTATGTTTGTTTATATTGAG
ATGCTTGACGTACATAAACATTCCAAGAAATTAACATTGTATATGCGCTT
TGCTTATTGAAGTGCCATATAAATAGCCCTTCAAACATTTGAACTTTCAA
ACGAGTCAGACAAGAGAACAATAAAGGTGGAAAGTCGCAAAACTTCAGAT
CAGAGTTGGTATTCAAGTTGAATCTCGCTAATACacttttctcgagatgc
ataaatttattgttgtcctcgttttcaaacagatttcattgctataaaat
tatacatttaaaccaatttaaattcccaaaaggcaaacatttactctaaa
acaaaagtacttgaaattcaaaatgtatcatgaggtgtaaacaacacaat
tatcattgtgaatttGTAATTTTagagcaatgaaatctgtttgaaaacga
ggacaacaataaatttatgcatctcgagaaaagtgtattcgaactcgaac
ggggaataACATCCGTTCGAAATACAGAGAGATTCGTGCTTGAGCCGGAA
CTTCTTGTTTGAGGCCCTGACGCATTAAAACAGCTTGGCAATCAACTCCT
AGTAAAGAGATAAATTGCTAACAATACAtaaaaaaaaatggctgaaCAGA
TATTCGCTGCTATAGCGATAATTGACAATGTTGAAAAAGTCATGGATAAA
GCAAGTAAAATTCTAGGTAAATGGCAagtatacgttttttataaacaggg
gtaaaccttgaaaaaattgCGCACTATCTTGCTCGGTACCgtagaaaaca
aaattttatgtagatttaaCATACTCAGAGTATCCCAATGAGGCCCTTGG
GGAAAACTTTAAGTAAAATCAAGCCTGAAGTTTACTCTTTTACCCTAAAA
TTGATAAGATACACTACAAAAGGATAAATCATAAAAATTACGTCTTTTAA
GTTTTgttctatctatctatttacACAGGTAAATGGCAAGAGTTATCAGC
AGGTAATGGAAGACATAATTTAACCCTTGGAAATCCTggtaaaaatgacg
tcattcttTACGAAGAAGAAATACGAAAAGGGCACAATGCGGCATATGTA
AAACATGAATTTGaatatcaaaaaaattcaggtatatattttttatagga
acaaactatataaaaacataaggcttcgatggctgaAATATTCAGAACAT
GtgaagaacatttaaaggctttatGGAGTCTAAAATACCCAGTTTCTTag
gaaatttaacaaaaatgatgaaattaagaacatttcaagaacatATTTAG
GCAAATaactcttattaaaaaaaagtgtaaagtATTTCCTCTTTTGTTGT
CAAAGGTGAAAGAATCACATCTGTCTTGGCGTATGATGAGTGGGACGATG
ATACGGGCGGCGACGCCCATAGAATCAGTGGCGGGGTCGATCAAGACCAT
GTTACCATCAAAATCAAATCTCGTTTAATGCGtggttttcatttcaaatt
tattgTTTACGGACAAAAGTCTTGAGTAGCGattaatttatatttttgat
acgttgcatatttttataagaaagagtATTAAACTTTTGTACTTAGGGGT
TTGGCTTATTTCACAGTAATTTAACCccaaattttttcttatgttattca
tattttttggcacatttttgaaacatttagGCTTTATAACTATAtccttt
tttaaaagatattttgagCCGTTCATTTGCTTAAAATTCACTCATCTTAA
GTTCTTAAATTGTTCCAGGCCGCCTAGTCTATAATATATGATATGATGTa
aaatcagtaaaataaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038580-exon-sc0001885-1491911889:14865..14958 | TCONS_00038580-exon-sc0001885-1491911889:14865..14958 | Clytia hemisphaerica | exon |
| TCONS_00038580-exon-sc0001885-1510915933:14865..14958 | TCONS_00038580-exon-sc0001885-1510915933:14865..14958 | Clytia hemisphaerica | exon |
| TCONS_00038580-exon-sc0001885-1575043694:14865..14958 | TCONS_00038580-exon-sc0001885-1575043694:14865..14958 | Clytia hemisphaerica | exon |
| TCONS_00038580-exon-sc0001885-1491911889:15772..15784 | TCONS_00038580-exon-sc0001885-1491911889:15772..15784 | Clytia hemisphaerica | exon |
| TCONS_00038580-exon-sc0001885-1510915933:15772..15784 | TCONS_00038580-exon-sc0001885-1510915933:15772..15784 | Clytia hemisphaerica | exon |
| TCONS_00038580-exon-sc0001885-1575043694:15772..15784 | TCONS_00038580-exon-sc0001885-1575043694:15772..15784 | Clytia hemisphaerica | exon |
| TCONS_00038580-exon-sc0001885-1491911889:18533..18981 | TCONS_00038580-exon-sc0001885-1491911889:18533..18981 | Clytia hemisphaerica | exon |
| TCONS_00038580-exon-sc0001885-1510915933:18533..18981 | TCONS_00038580-exon-sc0001885-1510915933:18533..18981 | Clytia hemisphaerica | exon |
| TCONS_00038580-exon-sc0001885-1575043694:18533..18981 | TCONS_00038580-exon-sc0001885-1575043694:18533..18981 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001885 | supercontig | sc0001885:14865..18981 + |
Blast
The following BLAST results are available for this feature:
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