TCONS_00038578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038578
Unique NameTCONS_00038578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038578 ID=TCONS_00038578|Name=TCONS_00038578|organism=Clytia hemisphaerica|type=transcript|length=802bp
CAAGGACGACACAACACAACATAAGAAAAGCATCAATACATACCgtaaaa
caatcaaaacaaaatggctgcaaATGCTCTNGCATAAGAAAAGCATCAAG
ACATACCgtaaaacaatcaaaacaaaatggctgcaaATGCTCTTGATGGT
GCTGGTCAAATCAtggataaaacaaaaaatattctagGTAAATGGCAAGA
GTTATCAGCAGGTAACGGAAGGCATAATTTAACCCTTGGAAATCCTggta
aaaatgacgtcatcctTTACGAAGAAAAAGTACGAAAAGGGAGTAGTATG
TCACATGTGACACATGAATTTGaatatcaaaaaaattcagGTGAAAGAAT
CACATCTGTCTTGGCGTATGATGAGTGGGACGATGATACGGGCGGCGACG
CCCATAGAATCAGTGGCGGGGTCGATCAAGACCATGTTACCATCAAAATC
AAATCTCGTTTAATGCGtggttttcatttcaaatttattgTTTACGGACA
AAAGTCTTGAGTAGCGattaatttatatttttgatacgttgcatattttt
ataagaaagagtATTAAACTTTTGTACTTAGGGGTTTGGCTTATTTCACA
GTAATTTAACCccaaattttttcttatgttattcatattttttggcacat
ttttgaaacatttagGCTTTATAACTATAtccttttttaaaagatatttt
gagCCGTTCATTTGCTTAAAATTCACTCATCTTAAGTTCTTAAATTGTTC
CAGGCCGCCTAGTCTATAATATATGATATGATGTaaaatcagtaaaataa
aa
Run BLAST on NCBI

transcript from alignment at sc0001885:14241..18981+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038578 ID=TCONS_00038578|Name=TCONS_00038578|organism=Clytia hemisphaerica|type=transcript|length=4741bp|location=Sequence derived from alignment at sc0001885:14241..18981+ (Clytia hemisphaerica)
CAAGGACGACACAACACAACATAAGAAAAGCATCAATACATACCgtaaaa
caatcaaaacaaaatggctgcaaATGCTCTNGCATAAGAAAAGCATCAAG
ACATACCgtaaaacaatcaaaacaaaatggctgcaaATGCTCTTGATGGT
GCTGGTCAAATCAtggataaaacaaaaaatattctagGTAAATATAACTA
TAAGCTACCTgtagggaactaattttggtgagcAGCAATAACCCTTAACA
ATTTTTAATTTGACGATAGAGATTTTACAACttgtaggcccaattgtaaa
attgatagGCTAAGTCCAataatttttggtaaaaaacttgtccccaggtc
ccaaaaatcaaaatattttgtatgtTTTTGTATTTACATGTTTATACTGG
TACAGTGAACACTCGTTAATTCGAACTTCCATTATTCGAggatctttcta
taattcgaacttttaATTCTTAGTCCCTCGTCAAAGGAAAGTcgtaaaat
actctctataatttcataattttttaattataattttGTTTAAGTTTTGT
TCTATCTATCTATAGGTAAATGGCAAGAGTTATCAGCAGGTAACGGAAGG
CATAATTTAACCCTTGGAAATCCTggtaaaaatgacgtcatcctTTACGA
AGAAAAAGTACGAAAAGGGAGTAGTATGTCACATGTGACACATGAATTTG
aatatcaaaaaaattcaggtataaataaataaatgctTGAAAATAGACTC
AACACAACATATTAACcaatattttcaatgttttgatgaattttacTAAA
TTTTAAGGCTGAAAAGCCGGAAGAACTGTTAATACTTTCCTTTCGAATAC
ACCTTTTTCCGATTAGCCGTTTCGTataaaaaatcactaaaatttcgagt
aaacaaaccatcccattggctaaaagcaaaaacataaacaaaaatatgTG
CATAGTATGAGAAAAATGTGCTTTCTGTGCTCTTactctatttttttgtt
tatgtttttgcttttagccaatgggatggtttgtttactcaaaattttgg
tgactttttagaCGAAGCAGCTAACCATAAAAAgtagtattgtaattttt
gcgaatttcacCGTTCGCCAAGCCTGAATTAGACCCCTGAAAGCTCTGGA
AAACATTTATGTTGGAAGTGTAGACTTGAGAGTCGTTTATAATAAAGTAA
TATTGGTGTTACATAATAATAAGAAAATCAtaacgggataatatcagttt
gtgtAATTCGTTCCTTCAATTAGTTTTGCTTAATTTCTGTtgtgtctgaa
ttagtcgtctacgCGTTtcttttgtataagaacaaactataagaacataa
ggcttcgatggccaaaatattaaaaacaaattaaggacattttaaggctt
cgcggactctaaaacacccgatttcttaggaaaatggacaaaaataatca
gaaaacgatgaaaataagaacatgttaaccCTTTGACGAGGGTTTTTCTG
AGACAgtaaagaattttcttttttgtgaCAGGTGAAAGAATCACATCTGT
CTTGGCGTATGATGAGTGGAGCGATGATACGGGCGGTGACGCCCAAAGGA
TCAGTGGCGGAGTCAATCAAGACCATGTTACCATCAAAATCAAATCTCGA
TTTATGCGtggttttcatttcaaatttattgTTTACGGACAAAAGTCTTG
AGTAGCGATTAATTTATCTTTTGATACGTTACATATTTTTATAATAAGAG
TAAACTTTTGTACCTAGGGGTTTCTTTTTTTACAGTAGTTTGACCCCCTA
ATTTCTTCTTATGTTATTCATATTTTTTGGcacattttttgaaacattta
ggTTTTATAGCTACatcctttttttaaaagatcatTTGAGCCGTTCATTT
GCTTAAAATCCAGTCATCTCAAGTTTTTGAATTGTtctcaaaacaaagga
accgctagatacaatccgtcgtcatgagcGCGGTGCGGTCTGGATGGGAA
acaagtggcttcactttttcttgcctgggataGGTTAGaaattctactct
agcccttcgggttttaaaCTTAATAAATGTgactcattgagtttcaagct
gAAAGCTATCGGCGAATCTTCAAGTTTTCTAAAACGatttgaagaaattt
caaaaaatttgcgccgcattttgaaacagattgaatctatcactttcttt
gttttaaacttttttcaaattccgACGGTAAATGTCagcgtttgtatgaa
aaccacgcgggCCGCACAACTTATGTAGAAAGTAAGTAGCTTCAAATCCT
ACATAAAGGAGACATGACTCTAAATTTCGTCAAGACTTAATGGGgtgggt
aaaaaaaaaaaagctttcttGGAACTAAAATGACGCACAGACaaacagga
aaattttcaacGATTCACTACATGAATATATGCACGTACAcatttatgaa
aatgttttccagGAGTGTTTTTAATCCACCTTAAATATGTTGAGTAAACC
AAAACTGACAATTATGTTTGTTTATATTGAGATGATTTACTGTATgaata
tacacgcttttttataagaaaacacttgaaatgaccaaaaaaatatatgc
taagaatatcaccatcatggaattttgctactcaagcttaagaatgccat
ttttagagtattttcaattagaaattgtcaattaccccatATAGGgccac
tcctttcacaaaaataccattttatgCTTCGGACGTATGTACTAtacatg
ttaaatctagtctgaattaggatccaaacataagaatgctgtaagaatat
tttaggatggtTTTCCCAAAATAGTTAAGaatatcaatgatgaaatggat
ttacactattcttataaaaaaaagtgtatgcaAACATTTATTAAAATAGT
TCCAGGAGTGTTTTTAATCCACCTTAAATCTGTTGAGTAAACAAAAACTG
ACAATTATGTTTGTTTATATTGAGATGCTTGACGTACATAAACATTCCAA
GAAATTAACATTGTATATGCGCTTTGCTTATTGAAGTGCCATATAAATAG
CCCTTCAAACATTTGAACTTTCAAACGAGTCAGACAAGAGAACAATAAAG
GTGGAAAGTCGCAAAACTTCAGATCAGAGTTGGTATTCAAGTTGAATCTC
GCTAATACacttttctcgagatgcataaatttattgttgtcctcgttttc
aaacagatttcattgctataaaattatacatttaaaccaatttaaattcc
caaaaggcaaacatttactctaaaacaaaagtacttgaaattcaaaatgt
atcatgaggtgtaaacaacacaattatcattgtgaatttGTAATTTTaga
gcaatgaaatctgtttgaaaacgaggacaacaataaatttatgcatctcg
agaaaagtgtattcgaactcgaacggggaataACATCCGTTCGAAATACA
GAGAGATTCGTGCTTGAGCCGGAACTTCTTGTTTGAGGCCCTGACGCATT
AAAACAGCTTGGCAATCAACTCCTAGTAAAGAGATAAATTGCTAACAATA
CAtaaaaaaaaatggctgaaCAGATATTCGCTGCTATAGCGATAATTGAC
AATGTTGAAAAAGTCATGGATAAAGCAAGTAAAATTCTAGGTAAATGGCA
agtatacgttttttataaacaggggtaaaccttgaaaaaattgCGCACTA
TCTTGCTCGGTACCgtagaaaacaaaattttatgtagatttaaCATACTC
AGAGTATCCCAATGAGGCCCTTGGGGAAAACTTTAAGTAAAATCAAGCCT
GAAGTTTACTCTTTTACCCTAAAATTGATAAGATACACTACAAAAGGATA
AATCATAAAAATTACGTCTTTTAAGTTTTgttctatctatctatttacAC
AGGTAAATGGCAAGAGTTATCAGCAGGTAATGGAAGACATAATTTAACCC
TTGGAAATCCTggtaaaaatgacgtcattcttTACGAAGAAGAAATACGA
AAAGGGCACAATGCGGCATATGTAAAACATGAATTTGaatatcaaaaaaa
ttcaggtatatattttttataggaacaaactatataaaaacataaggctt
cgatggctgaAATATTCAGAACATGtgaagaacatttaaaggctttatGG
AGTCTAAAATACCCAGTTTCTTaggaaatttaacaaaaatgatgaaatta
agaacatttcaagaacatATTTAGGCAAATaactcttattaaaaaaaagt
gtaaagtATTTCCTCTTTTGTTGTCAAAGGTGAAAGAATCACATCTGTCT
TGGCGTATGATGAGTGGGACGATGATACGGGCGGCGACGCCCATAGAATC
AGTGGCGGGGTCGATCAAGACCATGTTACCATCAAAATCAAATCTCGTTT
AATGCGtggttttcatttcaaatttattgTTTACGGACAAAAGTCTTGAG
TAGCGattaatttatatttttgatacgttgcatatttttataagaaagag
tATTAAACTTTTGTACTTAGGGGTTTGGCTTATTTCACAGTAATTTAACC
ccaaattttttcttatgttattcatattttttggcacatttttgaaacat
ttagGCTTTATAACTATAtccttttttaaaagatattttgagCCGTTCAT
TTGCTTAAAATTCACTCATCTTAAGTTCTTAAATTGTTCCAGGCCGCCTA
GTCTATAATATATGATATGATGTaaaatcagtaaaataaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023150XLOC_023150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038578-exon-sc0001885-1491911889:14241..14427TCONS_00038578-exon-sc0001885-1491911889:14241..14427Clytia hemisphaericaexon
TCONS_00038578-exon-sc0001885-1510915933:14241..14427TCONS_00038578-exon-sc0001885-1510915933:14241..14427Clytia hemisphaericaexon
TCONS_00038578-exon-sc0001885-1575043694:14241..14427TCONS_00038578-exon-sc0001885-1575043694:14241..14427Clytia hemisphaericaexon
TCONS_00038578-exon-sc0001885-1491911889:14806..14931TCONS_00038578-exon-sc0001885-1491911889:14806..14931Clytia hemisphaericaexon
TCONS_00038578-exon-sc0001885-1510915933:14806..14931TCONS_00038578-exon-sc0001885-1510915933:14806..14931Clytia hemisphaericaexon
TCONS_00038578-exon-sc0001885-1575043694:14806..14931TCONS_00038578-exon-sc0001885-1575043694:14806..14931Clytia hemisphaericaexon
TCONS_00038578-exon-sc0001885-1491911889:18269..18295TCONS_00038578-exon-sc0001885-1491911889:18269..18295Clytia hemisphaericaexon
TCONS_00038578-exon-sc0001885-1510915933:18269..18295TCONS_00038578-exon-sc0001885-1510915933:18269..18295Clytia hemisphaericaexon
TCONS_00038578-exon-sc0001885-1575043694:18269..18295TCONS_00038578-exon-sc0001885-1575043694:18269..18295Clytia hemisphaericaexon
TCONS_00038578-exon-sc0001885-1491911889:18520..18981TCONS_00038578-exon-sc0001885-1491911889:18520..18981Clytia hemisphaericaexon
TCONS_00038578-exon-sc0001885-1510915933:18520..18981TCONS_00038578-exon-sc0001885-1510915933:18520..18981Clytia hemisphaericaexon
TCONS_00038578-exon-sc0001885-1575043694:18520..18981TCONS_00038578-exon-sc0001885-1575043694:18520..18981Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001885supercontigsc0001885:14241..18981 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.318775	0	0	0	0	0	0.0398448	2.28431	0.40175	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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