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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038581 ID=TCONS_00038581|Name=TCONS_00038581|organism=Clytia hemisphaerica|type=transcript|length=879bp
acaacaataaatttatgcatctcgagaaaagtgtattcgaactcgaacgg
ggaataACATCCGTTCGAAATACAGAGAGATTCGTGCTTGAGCCGGAACT
TCTTGTTTGAGGCCCTGACGCATTAAAACAGCTTGGCAATCAACTCCTAG
TAAAGAGATAAATTGCTAACAATACAtaaaaaaaaatggctgaaCAGATA
TTCGCTGCTATAGCGATAATTGACAATGTTGAAAAAGTCATGGATAAAGC
AAGTAAAATTCTAGGTAAATGGCAAGAGTTATCAGCAGGTAATGGAAGAC
ATAATTTAACCCTTGGAAATCCTggtaaaaatgacgtcattcttTACGAA
GAAGAAATACGAAAAGGGCACAATGCGGCATATGTAAAACATGAATTTGa
atatcaaaaaaattcagGTGAAAGAATCACATCTGTCTTGGCGTATGATG
AGTGGGACGATGATACGGGCGGCGACGCCCATAGAATCAGTGGCGGGGTC
GATCAAGACCATGTTACCATCAAAATCAAATCTCGTTTAATGCGtggttt
tcatttcaaatttattgTTTACGGACAAAAGTCTTGAGTAGCGattaatt
tatatttttgatacgttgcatatttttataagaaagagtATTAAACTTTT
GTACTTAGGGGTTTGGCTTATTTCACAGTAATTTAACCccaaattttttc
ttatgttattcatattttttggcacatttttgaaacatttagGCTTTATA
ACTATAtccttttttaaaagatattttgagCCGTTCATTTGCTTAAAATT
CACTCATCTTAAGTTCTTAAATTGTTCCAGGCCGCCTAGTCTATAATATA
TGATATGATGTaaaatcagtaaaataaaa Run BLAST on NCBI transcript from alignment at sc0001885:17617..18981+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038581 ID=TCONS_00038581|Name=TCONS_00038581|organism=Clytia hemisphaerica|type=transcript|length=1365bp|location=Sequence derived from alignment at sc0001885:17617..18981+ (Clytia hemisphaerica)
acaacaataaatttatgcatctcgagaaaagtgtattcgaactcgaacgg
ggaataACATCCGTTCGAAATACAGAGAGATTCGTGCTTGAGCCGGAACT
TCTTGTTTGAGGCCCTGACGCATTAAAACAGCTTGGCAATCAACTCCTAG
TAAAGAGATAAATTGCTAACAATACAtaaaaaaaaatggctgaaCAGATA
TTCGCTGCTATAGCGATAATTGACAATGTTGAAAAAGTCATGGATAAAGC
AAGTAAAATTCTAGGTAAATGGCAagtatacgttttttataaacaggggt
aaaccttgaaaaaattgCGCACTATCTTGCTCGGTACCgtagaaaacaaa
attttatgtagatttaaCATACTCAGAGTATCCCAATGAGGCCCTTGGGG
AAAACTTTAAGTAAAATCAAGCCTGAAGTTTACTCTTTTACCCTAAAATT
GATAAGATACACTACAAAAGGATAAATCATAAAAATTACGTCTTTTAAGT
TTTgttctatctatctatttacACAGGTAAATGGCAAGAGTTATCAGCAG
GTAATGGAAGACATAATTTAACCCTTGGAAATCCTggtaaaaatgacgtc
attcttTACGAAGAAGAAATACGAAAAGGGCACAATGCGGCATATGTAAA
ACATGAATTTGaatatcaaaaaaattcaggtatatattttttataggaac
aaactatataaaaacataaggcttcgatggctgaAATATTCAGAACATGt
gaagaacatttaaaggctttatGGAGTCTAAAATACCCAGTTTCTTagga
aatttaacaaaaatgatgaaattaagaacatttcaagaacatATTTAGGC
AAATaactcttattaaaaaaaagtgtaaagtATTTCCTCTTTTGTTGTCA
AAGGTGAAAGAATCACATCTGTCTTGGCGTATGATGAGTGGGACGATGAT
ACGGGCGGCGACGCCCATAGAATCAGTGGCGGGGTCGATCAAGACCATGT
TACCATCAAAATCAAATCTCGTTTAATGCGtggttttcatttcaaattta
ttgTTTACGGACAAAAGTCTTGAGTAGCGattaatttatatttttgatac
gttgcatatttttataagaaagagtATTAAACTTTTGTACTTAGGGGTTT
GGCTTATTTCACAGTAATTTAACCccaaattttttcttatgttattcata
ttttttggcacatttttgaaacatttagGCTTTATAACTATAtccttttt
taaaagatattttgagCCGTTCATTTGCTTAAAATTCACTCATCTTAAGT
TCTTAAATTGTTCCAGGCCGCCTAGTCTATAATATATGATATGATGTaaa
atcagtaaaataaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038581-exon-sc0001885-1491911889:17617..17880 | TCONS_00038581-exon-sc0001885-1491911889:17617..17880 | Clytia hemisphaerica | exon |
| TCONS_00038581-exon-sc0001885-1510915933:17617..17880 | TCONS_00038581-exon-sc0001885-1510915933:17617..17880 | Clytia hemisphaerica | exon |
| TCONS_00038581-exon-sc0001885-1575043694:17617..17880 | TCONS_00038581-exon-sc0001885-1575043694:17617..17880 | Clytia hemisphaerica | exon |
| TCONS_00038581-exon-sc0001885-1491911889:18143..18295 | TCONS_00038581-exon-sc0001885-1491911889:18143..18295 | Clytia hemisphaerica | exon |
| TCONS_00038581-exon-sc0001885-1510915933:18143..18295 | TCONS_00038581-exon-sc0001885-1510915933:18143..18295 | Clytia hemisphaerica | exon |
| TCONS_00038581-exon-sc0001885-1575043694:18143..18295 | TCONS_00038581-exon-sc0001885-1575043694:18143..18295 | Clytia hemisphaerica | exon |
| TCONS_00038581-exon-sc0001885-1491911889:18520..18981 | TCONS_00038581-exon-sc0001885-1491911889:18520..18981 | Clytia hemisphaerica | exon |
| TCONS_00038581-exon-sc0001885-1510915933:18520..18981 | TCONS_00038581-exon-sc0001885-1510915933:18520..18981 | Clytia hemisphaerica | exon |
| TCONS_00038581-exon-sc0001885-1575043694:18520..18981 | TCONS_00038581-exon-sc0001885-1575043694:18520..18981 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001885 | supercontig | sc0001885:17617..18981 + |
Blast
The following BLAST results are available for this feature:
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