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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038577 ID=TCONS_00038577|Name=TCONS_00038577|organism=Clytia hemisphaerica|type=transcript|length=809bp
GAACACGCAAGGACGACACAACACAACATAAGAAAAGCATCAATACATAC
CgtaaaacaatcaaaacaaaatggctgcaaATGCTCTNGCATAAGAAAAG
CATCAAGACATACCgtaaaacaatcaaaacaaaatggctgcaaATGCTCT
TGATGGTGCTGGTCAAATCAtggataaaacaaaaaatattctagGTAAAT
GGCAAGAGTTATCAGCAGGTAATGGAAGACATAATTTAACCCTTGGAAAT
CCTggtaaaaatgacgtcattcttTACGAAGAAGAAATACGAAAAGGGCA
CAATGCGGCATATGTAAAACATGAATTTGaatatcaaaaaaattcagGTG
AAAGAATCACATCTGTCTTGGCGTATGATGAGTGGGACGATGATACGGGC
GGCGACGCCCATAGAATCAGTGGCGGGGTCGATCAAGACCATGTTACCAT
CAAAATCAAATCTCGTTTAATGCGtggttttcatttcaaatttattgTTT
ACGGACAAAAGTCTTGAGTAGCGattaatttatatttttgatacgttgca
tatttttataagaaagagtATTAAACTTTTGTACTTAGGGGTTTGGCTTA
TTTCACAGTAATTTAACCccaaattttttcttatgttattcatatttttt
ggcacatttttgaaacatttagGCTTTATAACTATAtccttttttaaaag
atattttgagCCGTTCATTTGCTTAAAATTCACTCATCTTAAGTTCTTAA
ATTGTTCCAGGCCGCCTAGTCTATAATATATGATATGATGTaaaatcagt
aaaataaaa Run BLAST on NCBI transcript from alignment at sc0001885:14234..18981+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038577 ID=TCONS_00038577|Name=TCONS_00038577|organism=Clytia hemisphaerica|type=transcript|length=4748bp|location=Sequence derived from alignment at sc0001885:14234..18981+ (Clytia hemisphaerica)
GAACACGCAAGGACGACACAACACAACATAAGAAAAGCATCAATACATAC
CgtaaaacaatcaaaacaaaatggctgcaaATGCTCTNGCATAAGAAAAG
CATCAAGACATACCgtaaaacaatcaaaacaaaatggctgcaaATGCTCT
TGATGGTGCTGGTCAAATCAtggataaaacaaaaaatattctagGTAAAT
ATAACTATAAGCTACCTgtagggaactaattttggtgagcAGCAATAACC
CTTAACAATTTTTAATTTGACGATAGAGATTTTACAACttgtaggcccaa
ttgtaaaattgatagGCTAAGTCCAataatttttggtaaaaaacttgtcc
ccaggtcccaaaaatcaaaatattttgtatgtTTTTGTATTTACATGTTT
ATACTGGTACAGTGAACACTCGTTAATTCGAACTTCCATTATTCGAggat
ctttctataattcgaacttttaATTCTTAGTCCCTCGTCAAAGGAAAGTc
gtaaaatactctctataatttcataattttttaattataattttGTTTAA
GTTTTGTTCTATCTATCTATAGGTAAATGGCAAGAGTTATCAGCAGGTAA
CGGAAGGCATAATTTAACCCTTGGAAATCCTggtaaaaatgacgtcatcc
tTTACGAAGAAAAAGTACGAAAAGGGAGTAGTATGTCACATGTGACACAT
GAATTTGaatatcaaaaaaattcaggtataaataaataaatgctTGAAAA
TAGACTCAACACAACATATTAACcaatattttcaatgttttgatgaattt
tacTAAATTTTAAGGCTGAAAAGCCGGAAGAACTGTTAATACTTTCCTTT
CGAATACACCTTTTTCCGATTAGCCGTTTCGTataaaaaatcactaaaat
ttcgagtaaacaaaccatcccattggctaaaagcaaaaacataaacaaaa
atatgTGCATAGTATGAGAAAAATGTGCTTTCTGTGCTCTTactctattt
ttttgtttatgtttttgcttttagccaatgggatggtttgtttactcaaa
attttggtgactttttagaCGAAGCAGCTAACCATAAAAAgtagtattgt
aatttttgcgaatttcacCGTTCGCCAAGCCTGAATTAGACCCCTGAAAG
CTCTGGAAAACATTTATGTTGGAAGTGTAGACTTGAGAGTCGTTTATAAT
AAAGTAATATTGGTGTTACATAATAATAAGAAAATCAtaacgggataata
tcagtttgtgtAATTCGTTCCTTCAATTAGTTTTGCTTAATTTCTGTtgt
gtctgaattagtcgtctacgCGTTtcttttgtataagaacaaactataag
aacataaggcttcgatggccaaaatattaaaaacaaattaaggacatttt
aaggcttcgcggactctaaaacacccgatttcttaggaaaatggacaaaa
ataatcagaaaacgatgaaaataagaacatgttaaccCTTTGACGAGGGT
TTTTCTGAGACAgtaaagaattttcttttttgtgaCAGGTGAAAGAATCA
CATCTGTCTTGGCGTATGATGAGTGGAGCGATGATACGGGCGGTGACGCC
CAAAGGATCAGTGGCGGAGTCAATCAAGACCATGTTACCATCAAAATCAA
ATCTCGATTTATGCGtggttttcatttcaaatttattgTTTACGGACAAA
AGTCTTGAGTAGCGATTAATTTATCTTTTGATACGTTACATATTTTTATA
ATAAGAGTAAACTTTTGTACCTAGGGGTTTCTTTTTTTACAGTAGTTTGA
CCCCCTAATTTCTTCTTATGTTATTCATATTTTTTGGcacattttttgaa
acatttaggTTTTATAGCTACatcctttttttaaaagatcatTTGAGCCG
TTCATTTGCTTAAAATCCAGTCATCTCAAGTTTTTGAATTGTtctcaaaa
caaaggaaccgctagatacaatccgtcgtcatgagcGCGGTGCGGTCTGG
ATGGGAAacaagtggcttcactttttcttgcctgggataGGTTAGaaatt
ctactctagcccttcgggttttaaaCTTAATAAATGTgactcattgagtt
tcaagctgAAAGCTATCGGCGAATCTTCAAGTTTTCTAAAACGatttgaa
gaaatttcaaaaaatttgcgccgcattttgaaacagattgaatctatcac
tttctttgttttaaacttttttcaaattccgACGGTAAATGTCagcgttt
gtatgaaaaccacgcgggCCGCACAACTTATGTAGAAAGTAAGTAGCTTC
AAATCCTACATAAAGGAGACATGACTCTAAATTTCGTCAAGACTTAATGG
GgtgggtaaaaaaaaaaaagctttcttGGAACTAAAATGACGCACAGACa
aacaggaaaattttcaacGATTCACTACATGAATATATGCACGTACAcat
ttatgaaaatgttttccagGAGTGTTTTTAATCCACCTTAAATATGTTGA
GTAAACCAAAACTGACAATTATGTTTGTTTATATTGAGATGATTTACTGT
ATgaatatacacgcttttttataagaaaacacttgaaatgaccaaaaaaa
tatatgctaagaatatcaccatcatggaattttgctactcaagcttaaga
atgccatttttagagtattttcaattagaaattgtcaattaccccatATA
GGgccactcctttcacaaaaataccattttatgCTTCGGACGTATGTACT
Atacatgttaaatctagtctgaattaggatccaaacataagaatgctgta
agaatattttaggatggtTTTCCCAAAATAGTTAAGaatatcaatgatga
aatggatttacactattcttataaaaaaaagtgtatgcaAACATTTATTA
AAATAGTTCCAGGAGTGTTTTTAATCCACCTTAAATCTGTTGAGTAAACA
AAAACTGACAATTATGTTTGTTTATATTGAGATGCTTGACGTACATAAAC
ATTCCAAGAAATTAACATTGTATATGCGCTTTGCTTATTGAAGTGCCATA
TAAATAGCCCTTCAAACATTTGAACTTTCAAACGAGTCAGACAAGAGAAC
AATAAAGGTGGAAAGTCGCAAAACTTCAGATCAGAGTTGGTATTCAAGTT
GAATCTCGCTAATACacttttctcgagatgcataaatttattgttgtcct
cgttttcaaacagatttcattgctataaaattatacatttaaaccaattt
aaattcccaaaaggcaaacatttactctaaaacaaaagtacttgaaattc
aaaatgtatcatgaggtgtaaacaacacaattatcattgtgaatttGTAA
TTTTagagcaatgaaatctgtttgaaaacgaggacaacaataaatttatg
catctcgagaaaagtgtattcgaactcgaacggggaataACATCCGTTCG
AAATACAGAGAGATTCGTGCTTGAGCCGGAACTTCTTGTTTGAGGCCCTG
ACGCATTAAAACAGCTTGGCAATCAACTCCTAGTAAAGAGATAAATTGCT
AACAATACAtaaaaaaaaatggctgaaCAGATATTCGCTGCTATAGCGAT
AATTGACAATGTTGAAAAAGTCATGGATAAAGCAAGTAAAATTCTAGGTA
AATGGCAagtatacgttttttataaacaggggtaaaccttgaaaaaattg
CGCACTATCTTGCTCGGTACCgtagaaaacaaaattttatgtagatttaa
CATACTCAGAGTATCCCAATGAGGCCCTTGGGGAAAACTTTAAGTAAAAT
CAAGCCTGAAGTTTACTCTTTTACCCTAAAATTGATAAGATACACTACAA
AAGGATAAATCATAAAAATTACGTCTTTTAAGTTTTgttctatctatcta
tttacACAGGTAAATGGCAAGAGTTATCAGCAGGTAATGGAAGACATAAT
TTAACCCTTGGAAATCCTggtaaaaatgacgtcattcttTACGAAGAAGA
AATACGAAAAGGGCACAATGCGGCATATGTAAAACATGAATTTGaatatc
aaaaaaattcaggtatatattttttataggaacaaactatataaaaacat
aaggcttcgatggctgaAATATTCAGAACATGtgaagaacatttaaaggc
tttatGGAGTCTAAAATACCCAGTTTCTTaggaaatttaacaaaaatgat
gaaattaagaacatttcaagaacatATTTAGGCAAATaactcttattaaa
aaaaagtgtaaagtATTTCCTCTTTTGTTGTCAAAGGTGAAAGAATCACA
TCTGTCTTGGCGTATGATGAGTGGGACGATGATACGGGCGGCGACGCCCA
TAGAATCAGTGGCGGGGTCGATCAAGACCATGTTACCATCAAAATCAAAT
CTCGTTTAATGCGtggttttcatttcaaatttattgTTTACGGACAAAAG
TCTTGAGTAGCGattaatttatatttttgatacgttgcatatttttataa
gaaagagtATTAAACTTTTGTACTTAGGGGTTTGGCTTATTTCACAGTAA
TTTAACCccaaattttttcttatgttattcatattttttggcacattttt
gaaacatttagGCTTTATAACTATAtccttttttaaaagatattttgagC
CGTTCATTTGCTTAAAATTCACTCATCTTAAGTTCTTAAATTGTTCCAGG
CCGCCTAGTCTATAATATATGATATGATGTaaaatcagtaaaataaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038577-exon-sc0001885-1491911889:14234..14427 | TCONS_00038577-exon-sc0001885-1491911889:14234..14427 | Clytia hemisphaerica | exon |
| TCONS_00038577-exon-sc0001885-1510915933:14234..14427 | TCONS_00038577-exon-sc0001885-1510915933:14234..14427 | Clytia hemisphaerica | exon |
| TCONS_00038577-exon-sc0001885-1575043694:14234..14427 | TCONS_00038577-exon-sc0001885-1575043694:14234..14427 | Clytia hemisphaerica | exon |
| TCONS_00038577-exon-sc0001885-1491911889:18143..18295 | TCONS_00038577-exon-sc0001885-1491911889:18143..18295 | Clytia hemisphaerica | exon |
| TCONS_00038577-exon-sc0001885-1510915933:18143..18295 | TCONS_00038577-exon-sc0001885-1510915933:18143..18295 | Clytia hemisphaerica | exon |
| TCONS_00038577-exon-sc0001885-1575043694:18143..18295 | TCONS_00038577-exon-sc0001885-1575043694:18143..18295 | Clytia hemisphaerica | exon |
| TCONS_00038577-exon-sc0001885-1491911889:18520..18981 | TCONS_00038577-exon-sc0001885-1491911889:18520..18981 | Clytia hemisphaerica | exon |
| TCONS_00038577-exon-sc0001885-1510915933:18520..18981 | TCONS_00038577-exon-sc0001885-1510915933:18520..18981 | Clytia hemisphaerica | exon |
| TCONS_00038577-exon-sc0001885-1575043694:18520..18981 | TCONS_00038577-exon-sc0001885-1575043694:18520..18981 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001885 | supercontig | sc0001885:14234..18981 + |
Blast
The following BLAST results are available for this feature:
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