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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038579 ID=TCONS_00038579|Name=TCONS_00038579|organism=Clytia hemisphaerica|type=transcript|length=701bp
CATACCgtaaaacaatcaaaacaaaatggctgcaaATGCTCTTGATGGTG
CTGGTCAAATCAtggataaaacaaaaaatattctagGTAAATGGCAAGAG
TTATCAGCAGGTAATGGAAGACATAATTTAACCCTTGGAAATCCTggtaa
aaatgacgtcattcttTACGAAGAAGAAATACGAAAAGGGCACAATGCGG
CATATGTAAAACATGAATTTGaatatcaaaaaaattcagGTGAAAGAATC
ACATCTGTCTTGGCGTATGATGAGTGGGACGATGATACGGGCGGCGACGC
CCATAGAATCAGTGGCGGGGTCGATCAAGACCATGTTACCATCAAAATCA
AATCTCGTTTAATGCGtggttttcatttcaaatttattgTTTACGGACAA
AAGTCTTGAGTAGCGattaatttatatttttgatacgttgcatattttta
taagaaagagtATTAAACTTTTGTACTTAGGGGTTTGGCTTATTTCACAG
TAATTTAACCccaaattttttcttatgttattcatattttttggcacatt
tttgaaacatttagGCTTTATAACTATAtccttttttaaaagatattttg
agCCGTTCATTTGCTTAAAATTCACTCATCTTAAGTTCTTAAATTGTTCC
AGGCCGCCTAGTCTATAATATATGATATGATGTaaaatcagtaaaataaa
a Run BLAST on NCBI protein sequence of TCONS_00038579-protein >TCONS_00038579-protein ID=TCONS_00038579-protein|Name=TCONS_00038579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MAANALDGAGQIMDKTKNILGKWQELSAGNGRHNLTLGNPGKNDVILYEE
EIRKGHNAAYVKHEFEYQKNSGERITSVLAYDEWDDDTGGDAHRISGGVD
QDHVTIKIKSRLMRGFHFKFIVYGQKS Run BLAST on NCBI transcript from alignment at sc0001885:14342..18981+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038579 ID=TCONS_00038579|Name=TCONS_00038579|organism=Clytia hemisphaerica|type=transcript|length=4640bp|location=Sequence derived from alignment at sc0001885:14342..18981+ (Clytia hemisphaerica)
CATACCgtaaaacaatcaaaacaaaatggctgcaaATGCTCTTGATGGTG
CTGGTCAAATCAtggataaaacaaaaaatattctagGTAAATATAACTAT
AAGCTACCTgtagggaactaattttggtgagcAGCAATAACCCTTAACAA
TTTTTAATTTGACGATAGAGATTTTACAACttgtaggcccaattgtaaaa
ttgatagGCTAAGTCCAataatttttggtaaaaaacttgtccccaggtcc
caaaaatcaaaatattttgtatgtTTTTGTATTTACATGTTTATACTGGT
ACAGTGAACACTCGTTAATTCGAACTTCCATTATTCGAggatctttctat
aattcgaacttttaATTCTTAGTCCCTCGTCAAAGGAAAGTcgtaaaata
ctctctataatttcataattttttaattataattttGTTTAAGTTTTGTT
CTATCTATCTATAGGTAAATGGCAAGAGTTATCAGCAGGTAACGGAAGGC
ATAATTTAACCCTTGGAAATCCTggtaaaaatgacgtcatcctTTACGAA
GAAAAAGTACGAAAAGGGAGTAGTATGTCACATGTGACACATGAATTTGa
atatcaaaaaaattcaggtataaataaataaatgctTGAAAATAGACTCA
ACACAACATATTAACcaatattttcaatgttttgatgaattttacTAAAT
TTTAAGGCTGAAAAGCCGGAAGAACTGTTAATACTTTCCTTTCGAATACA
CCTTTTTCCGATTAGCCGTTTCGTataaaaaatcactaaaatttcgagta
aacaaaccatcccattggctaaaagcaaaaacataaacaaaaatatgTGC
ATAGTATGAGAAAAATGTGCTTTCTGTGCTCTTactctatttttttgttt
atgtttttgcttttagccaatgggatggtttgtttactcaaaattttggt
gactttttagaCGAAGCAGCTAACCATAAAAAgtagtattgtaatttttg
cgaatttcacCGTTCGCCAAGCCTGAATTAGACCCCTGAAAGCTCTGGAA
AACATTTATGTTGGAAGTGTAGACTTGAGAGTCGTTTATAATAAAGTAAT
ATTGGTGTTACATAATAATAAGAAAATCAtaacgggataatatcagtttg
tgtAATTCGTTCCTTCAATTAGTTTTGCTTAATTTCTGTtgtgtctgaat
tagtcgtctacgCGTTtcttttgtataagaacaaactataagaacataag
gcttcgatggccaaaatattaaaaacaaattaaggacattttaaggcttc
gcggactctaaaacacccgatttcttaggaaaatggacaaaaataatcag
aaaacgatgaaaataagaacatgttaaccCTTTGACGAGGGTTTTTCTGA
GACAgtaaagaattttcttttttgtgaCAGGTGAAAGAATCACATCTGTC
TTGGCGTATGATGAGTGGAGCGATGATACGGGCGGTGACGCCCAAAGGAT
CAGTGGCGGAGTCAATCAAGACCATGTTACCATCAAAATCAAATCTCGAT
TTATGCGtggttttcatttcaaatttattgTTTACGGACAAAAGTCTTGA
GTAGCGATTAATTTATCTTTTGATACGTTACATATTTTTATAATAAGAGT
AAACTTTTGTACCTAGGGGTTTCTTTTTTTACAGTAGTTTGACCCCCTAA
TTTCTTCTTATGTTATTCATATTTTTTGGcacattttttgaaacatttag
gTTTTATAGCTACatcctttttttaaaagatcatTTGAGCCGTTCATTTG
CTTAAAATCCAGTCATCTCAAGTTTTTGAATTGTtctcaaaacaaaggaa
ccgctagatacaatccgtcgtcatgagcGCGGTGCGGTCTGGATGGGAAa
caagtggcttcactttttcttgcctgggataGGTTAGaaattctactcta
gcccttcgggttttaaaCTTAATAAATGTgactcattgagtttcaagctg
AAAGCTATCGGCGAATCTTCAAGTTTTCTAAAACGatttgaagaaatttc
aaaaaatttgcgccgcattttgaaacagattgaatctatcactttctttg
ttttaaacttttttcaaattccgACGGTAAATGTCagcgtttgtatgaaa
accacgcgggCCGCACAACTTATGTAGAAAGTAAGTAGCTTCAAATCCTA
CATAAAGGAGACATGACTCTAAATTTCGTCAAGACTTAATGGGgtgggta
aaaaaaaaaaagctttcttGGAACTAAAATGACGCACAGACaaacaggaa
aattttcaacGATTCACTACATGAATATATGCACGTACAcatttatgaaa
atgttttccagGAGTGTTTTTAATCCACCTTAAATATGTTGAGTAAACCA
AAACTGACAATTATGTTTGTTTATATTGAGATGATTTACTGTATgaatat
acacgcttttttataagaaaacacttgaaatgaccaaaaaaatatatgct
aagaatatcaccatcatggaattttgctactcaagcttaagaatgccatt
tttagagtattttcaattagaaattgtcaattaccccatATAGGgccact
cctttcacaaaaataccattttatgCTTCGGACGTATGTACTAtacatgt
taaatctagtctgaattaggatccaaacataagaatgctgtaagaatatt
ttaggatggtTTTCCCAAAATAGTTAAGaatatcaatgatgaaatggatt
tacactattcttataaaaaaaagtgtatgcaAACATTTATTAAAATAGTT
CCAGGAGTGTTTTTAATCCACCTTAAATCTGTTGAGTAAACAAAAACTGA
CAATTATGTTTGTTTATATTGAGATGCTTGACGTACATAAACATTCCAAG
AAATTAACATTGTATATGCGCTTTGCTTATTGAAGTGCCATATAAATAGC
CCTTCAAACATTTGAACTTTCAAACGAGTCAGACAAGAGAACAATAAAGG
TGGAAAGTCGCAAAACTTCAGATCAGAGTTGGTATTCAAGTTGAATCTCG
CTAATACacttttctcgagatgcataaatttattgttgtcctcgttttca
aacagatttcattgctataaaattatacatttaaaccaatttaaattccc
aaaaggcaaacatttactctaaaacaaaagtacttgaaattcaaaatgta
tcatgaggtgtaaacaacacaattatcattgtgaatttGTAATTTTagag
caatgaaatctgtttgaaaacgaggacaacaataaatttatgcatctcga
gaaaagtgtattcgaactcgaacggggaataACATCCGTTCGAAATACAG
AGAGATTCGTGCTTGAGCCGGAACTTCTTGTTTGAGGCCCTGACGCATTA
AAACAGCTTGGCAATCAACTCCTAGTAAAGAGATAAATTGCTAACAATAC
AtaaaaaaaaatggctgaaCAGATATTCGCTGCTATAGCGATAATTGACA
ATGTTGAAAAAGTCATGGATAAAGCAAGTAAAATTCTAGGTAAATGGCAa
gtatacgttttttataaacaggggtaaaccttgaaaaaattgCGCACTAT
CTTGCTCGGTACCgtagaaaacaaaattttatgtagatttaaCATACTCA
GAGTATCCCAATGAGGCCCTTGGGGAAAACTTTAAGTAAAATCAAGCCTG
AAGTTTACTCTTTTACCCTAAAATTGATAAGATACACTACAAAAGGATAA
ATCATAAAAATTACGTCTTTTAAGTTTTgttctatctatctatttacACA
GGTAAATGGCAAGAGTTATCAGCAGGTAATGGAAGACATAATTTAACCCT
TGGAAATCCTggtaaaaatgacgtcattcttTACGAAGAAGAAATACGAA
AAGGGCACAATGCGGCATATGTAAAACATGAATTTGaatatcaaaaaaat
tcaggtatatattttttataggaacaaactatataaaaacataaggcttc
gatggctgaAATATTCAGAACATGtgaagaacatttaaaggctttatGGA
GTCTAAAATACCCAGTTTCTTaggaaatttaacaaaaatgatgaaattaa
gaacatttcaagaacatATTTAGGCAAATaactcttattaaaaaaaagtg
taaagtATTTCCTCTTTTGTTGTCAAAGGTGAAAGAATCACATCTGTCTT
GGCGTATGATGAGTGGGACGATGATACGGGCGGCGACGCCCATAGAATCA
GTGGCGGGGTCGATCAAGACCATGTTACCATCAAAATCAAATCTCGTTTA
ATGCGtggttttcatttcaaatttattgTTTACGGACAAAAGTCTTGAGT
AGCGattaatttatatttttgatacgttgcatatttttataagaaagagt
ATTAAACTTTTGTACTTAGGGGTTTGGCTTATTTCACAGTAATTTAACCc
caaattttttcttatgttattcatattttttggcacatttttgaaacatt
tagGCTTTATAACTATAtccttttttaaaagatattttgagCCGTTCATT
TGCTTAAAATTCACTCATCTTAAGTTCTTAAATTGTTCCAGGCCGCCTAG
TCTATAATATATGATATGATGTaaaatcagtaaaataaaa Coding sequence (CDS) from alignment at sc0001885:14342..18981+ >TCONS_00038579 ID=TCONS_00038579|Name=TCONS_00038579|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at sc0001885:14342..18981+ (Clytia hemisphaerica)
atggctgcaaATGCTCTTGATGGTGCTGGTCAAATCAtggataaaacaaa
aaatattctagGTAAATGGCAAGAGTTATCAGCAGGTAATGGAAGACATA
ATTTAACCCTTGGAAATCCTggtaaaaatgacgtcattcttTACGAAGAA
GAAATACGAAAAGGGCACAATGCGGCATATGTAAAACATGAATTTGaata
tcaaaaaaattcagGTGAAAGAATCACATCTGTCTTGGCGTATGATGAGT
GGGACGATGATACGGGCGGCGACGCCCATAGAATCAGTGGCGGGGTCGAT
CAAGACCATGTTACCATCAAAATCAAATCTCGTTTAATGCGtggttttca
tttcaaatttattgTTTACGGACAAAAGTCTTGAatggctgcaaATGCTC
TTGATGGTGCTGGTCAAATCAtggataaaacaaaaaatattctagGTAAA
TGGCAAGAGTTATCAGCAGGTAATGGAAGACATAATTTAACCCTTGGAAA
TCCTggtaaaaatgacgtcattcttTACGAAGAAGAAATACGAAAAGGGC
ACAATGCGGCATATGTAAAACATGAATTTGaatatcaaaaaaattcagGT
GAAAGAATCACATCTGTCTTGGCGTATGATGAGTGGGACGATGATACGGG
CGGCGACGCCCATAGAATCAGTGGCGGGGTCGATCAAGACCATGTTACCA
TCAAAATCAAATCTCGTTTAATGCGtggttttcatttcaaatttattgTT
TACGGACAAAAGTCTTGAatggctgcaaATGCTCTTGATGGTGCTGGTCA
AATCAtggataaaacaaaaaatattctagGTAAATGGCAAGAGTTATCAG
CAGGTAATGGAAGACATAATTTAACCCTTGGAAATCCTggtaaaaatgac
gtcattcttTACGAAGAAGAAATACGAAAAGGGCACAATGCGGCATATGT
AAAACATGAATTTGaatatcaaaaaaattcagGTGAAAGAATCACATCTG
TCTTGGCGTATGATGAGTGGGACGATGATACGGGCGGCGACGCCCATAGA
ATCAGTGGCGGGGTCGATCAAGACCATGTTACCATCAAAATCAAATCTCG
TTTAATGCGtggttttcatttcaaatttattgTTTACGGACAAAAGTCTT
GAatggctgcaaATGCTCTTGATGGTGCTGGTCAAATCAtggataaaaca
aaaaatattctagGTAAATGGCAAGAGTTATCAGCAGGTAATGGAAGACA
TAATTTAACCCTTGGAAATCCTggtaaaaatgacgtcattcttTACGAAG
AAGAAATACGAAAAGGGCACAATGCGGCATATGTAAAACATGAATTTGaa
tatcaaaaaaattcagGTGAAAGAATCACATCTGTCTTGGCGTATGATGA
GTGGGACGATGATACGGGCGGCGACGCCCATAGAATCAGTGGCGGGGTCG
ATCAAGACCATGTTACCATCAAAATCAAATCTCGTTTAATGCGtggtttt
catttcaaatttattgTTTACGGACAAAAGTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038579-exon-sc0001885-1491911889:14342..14427 | TCONS_00038579-exon-sc0001885-1491911889:14342..14427 | Clytia hemisphaerica | exon |
| TCONS_00038579-exon-sc0001885-1510915933:14342..14427 | TCONS_00038579-exon-sc0001885-1510915933:14342..14427 | Clytia hemisphaerica | exon |
| TCONS_00038579-exon-sc0001885-1575043694:14342..14427 | TCONS_00038579-exon-sc0001885-1575043694:14342..14427 | Clytia hemisphaerica | exon |
| TCONS_00038579-exon-sc0001885-1491911889:14806..14829 | TCONS_00038579-exon-sc0001885-1491911889:14806..14829 | Clytia hemisphaerica | exon |
| TCONS_00038579-exon-sc0001885-1510915933:14806..14829 | TCONS_00038579-exon-sc0001885-1510915933:14806..14829 | Clytia hemisphaerica | exon |
| TCONS_00038579-exon-sc0001885-1575043694:14806..14829 | TCONS_00038579-exon-sc0001885-1575043694:14806..14829 | Clytia hemisphaerica | exon |
| TCONS_00038579-exon-sc0001885-1491911889:18167..18295 | TCONS_00038579-exon-sc0001885-1491911889:18167..18295 | Clytia hemisphaerica | exon |
| TCONS_00038579-exon-sc0001885-1510915933:18167..18295 | TCONS_00038579-exon-sc0001885-1510915933:18167..18295 | Clytia hemisphaerica | exon |
| TCONS_00038579-exon-sc0001885-1575043694:18167..18295 | TCONS_00038579-exon-sc0001885-1575043694:18167..18295 | Clytia hemisphaerica | exon |
| TCONS_00038579-exon-sc0001885-1491911889:18520..18981 | TCONS_00038579-exon-sc0001885-1491911889:18520..18981 | Clytia hemisphaerica | exon |
| TCONS_00038579-exon-sc0001885-1510915933:18520..18981 | TCONS_00038579-exon-sc0001885-1510915933:18520..18981 | Clytia hemisphaerica | exon |
| TCONS_00038579-exon-sc0001885-1575043694:18520..18981 | TCONS_00038579-exon-sc0001885-1575043694:18520..18981 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001885 | supercontig | sc0001885:14342..18981 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR031734 | MBF2 |
Blast
The following BLAST results are available for this feature:
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