XLOC_022983 (gene) - C. hemisphaerica

Overview
NameXLOC_022983
Unique NameXLOC_022983
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001839:5873..11644+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_022983 ID=XLOC_022983|Name=XLOC_022983|organism=Clytia hemisphaerica|type=gene|length=5772bp|location=Sequence derived from alignment at sc0001839:5873..11644+ (Clytia hemisphaerica)
CCCGATAGTTTACCAACACAATTACcaccaaaaaaattaatcacACTAAA
CAAAACAACCATTTTTATGTTATTCACGTAATCACAGCAATGTAAAAACT
TGTTTACTTCAACACAACAATATAATATCGAACTATTTGCCTTATTACTT
ATTCGCACtgatgaaaatttagagaatgATTTATTCCTTAACCATAtctt
tattaccaaaataattttctatatAATAGCTAAGGACACCATGTAATGAC
CTGATTTACTTTGAAAGCCTGCTCAAATAGTATTCTTTTCTAATTCAACA
TTATGTTTTCACCAAATTTATCcaacaatcaagcaaaaattatTAGGAAA
AATCTATGCCCAGCGTAGGAAGAaacttaaaaatatcaaaaccaaaCAAC
TGGTAAGTCAAATCATTTTcgacatttttaaaaagttgggAAAATGGTAA
TCGTCAATGCTTCATCAGTGTTTATTATTTCGCAGTATAACATtaacaaa
gaaatgaaaaattatgcGATGCTTTGCTTACCTTGATTTTTATTCACTTA
AATTTAACTAGCTATAGCTACTTAGTGTGTCCTTTTAATCAAAAGCAACC
ATTCGATAGTCAACATTCAACCAATTGATAGTCAATAATCAATCAATGAT
TTGTCGAAAATCAAGTACTTCTTTTCTTTAATGACCACAAAATACATACA
AATCAGAAAGTTTATACATCATATTTAATAAGTCATATTAATTTCGTTTT
CAATCTTTTAAAATCGTACCGTGATGGCACGTTCTGACACAATCATAATA
ATTAGATATTCTTGCTGATTAATCTTTTTAACCTTCTAAAAGGAGTCAGT
CATAAGGTATTTGGTTATATTTTGTAACATTGATCGGTTTcatttctctt
ttcttgttaaagGAAACATACATAAAGGTTAAATATTAGGAATTGATAGA
TCATGTCAACCAAACGTAGAGGAAGCAATGGGCTTGATTGGAATAAAACT
GTAAGTCCATAATTATATTGAACTTTaactaaattatttttgtttcatcA
GAAATTTCAGGCTGATTTTGGATTCTTACAAGATTGTTAGAGTATTTTTT
ATGGTTCTATTACTGTTTTCCTATTTCACTGCCTTGAATTGCAGTGTtgt
gttttaaataatttaaaatagaaTCTCAGCAAATATATTTCATGCCAATT
AACGAATTTGGATTGTATTTACTGGACAGCGGCCGATTTTTTAGGGACGC
TGAAAGACGGGGCACCAAAAGGCGTctgtgatttctaattttggcgcccc
ttatCTTAAAATTAGCAGTTTTCACTggttttcagccaaaaagaaggaaa
atatccaaaaattgtaGTGTTTTGGCCATTTTATTCTTTTCAGGTAAAAT
TGATTGAATCCAAAAAGGATCGTAATCGCAGAAACCGAGATTACATAGAA
CAAGTAAAAACGAAGGTAAAAATGACGACAGCTTCAGTGACTCACTACTC
AGAAGTTTTTTAGAAGGCATAGtttcatttattttaaaaatttgtgttAC
TTACCGAATTTTCTTACTCAGAAAAAAAGTACTCGTGTGGTTGTGGAGAA
ATTTTCCTAACCTTCTTTGATTTAAATTTATGTTAACTATTTTCGTCAGG
CTCATGAATGGAATGTTTATTGCAAAACTACAGTTGGATTTGTTGCAATT
TATGAGGAAAAAATACATTATAGTGGTAGGATTCAAACTCTTAACTTTTT
ACCGACTTGCTTAAATGGTTTGTGGACCGTGTCGTAAAATATTGCCTTTG
TCAATCATCCGGCGTTTCATAAAAGAAAACAGCAAAATTGTTCTACAACT
TAAAGTTAAAACCTGACGGCAGATTGGGGGGGGGCAGACGTCACCTCCTC
TCGTTACATTAGCATTATCAAAATATGATTATAATTGTTTTATTTGAGCC
AAGAatccatttttcatttcaaaggtAATAATCAGTCAATGGTAAATTTT
CTAAATGACGAACGAGTGCTGACGATTCTAAAGGAATATTGTACATTCAC
AGGTATTGTATTTGATCACTCTTGGTTATTTTTCTTTCCATTGAATTCTG
GTGCTTTTTTACCTTTTCTATATTTAGAAGAAGAGTTATGAAAATGGCTT
ATGAGGATTGCTATGCATGGTAGAATTCTGACCgcttttgaaaatattgg
ctGGAAAAGGATTCTGACCGCTTTATTTGGGAAACTCTGCATATGTAAAA
TTCTTTATTgccattttatattttctttaaaattttggcaaaataaaaag
ttttttcatagcAAAATAGTAATCATCAAATTCAGGATAGGAGAAAAGAA
ACGACTCCCTTGTAATATTACAATATTTCTACTAAACAGATAAGTTGGAA
GTGAAGaaagtttcaagaaaaacaaatatttgtGGTATGAGTGGTTTTCT
CTTTAAAATCTTTAAGCTTTCATATAATGTAATGTAATCCTTTTAGAATC
CTTGAGTTAATCCATTTCTTGTAATAATTATATTCCAGCtactaaaaaag
aaagaaaaacaaaaaggaaaactGGAATAAATCACCATTCGACTGAAATA
AGTAAATATGATTTATCGCAGAAAATGTTATCAGCAATTCACTGGAATAA
GAATAAATTCCTTGTTATAGTGAcagaaattcaaaataatttctataatt
tGTAGAGATAATTTGTACTTGCTCTGGAAACGTTAATAGGATGGGAAGTA
GATTATCAAAGCTGGCAAGTAACAGATTTACATTTTGTAACTTCTCGTTG
ACAAACTGTAATCAAAACAATATTTGAATcctattttagcaaaaaagaga
aaagaagaaaagaaagctgaagaaaatagctttcacactaaaacaaaaca
agtaaacaaactttCACCGCACATTTCGATAATTCATTAGGGTAAATTAC
CAAAAGGTTAATACGATAGATCTAACTAAAGaactttcttaaaaattgaa
aaaatttatttcgtggTTCAATCTACGAAGTTTTTCcatactttttgata
aaaggtaTATATTTGCTTGTCACAGTTTTTCTTTGACACTCTATATTTTT
TACTGAACAACCGATCCCTTTCCGATAAGATATCCCTCGTCCGTTATATT
TGTTGATTGTTTGTTTTAGACTGCTGCAAAGACTTTTGTCTGAAACCAGT
TAAACCGATATACTCCCAAACGTTTACTTGTGACAAGTGCCTCAAGACTT
TTCATAGTAAATGTGTGGAGCTTGGGACGTCACAACCCCGATCATGTGGA
TGTCACTTAATCACACCTCTGATCGTAGAGCATAAACGGTAATTGTGTAC
CTCTGAGGCTTTTAAAAAGAAAAGGTTCCTGAGACtttaattataatttt
aatttcataTACGTGTTTATTTATGGTCAATCTTATAAATTTGACAACGG
GATATCTCCTCTCATAGTAAGGGCTATCATTAGACTGAGAGGGAAAGATT
TCCTAAGGTCTCATCTCACAGCTGCATTTCctgaaaaagattttacaagA
GCGATAAGggtaaatttgtaaaaattttctgCAAGGAAACTCAAATCAAG
TCTCTGGTGTGACTATACCATCGCGtttttttctgataaaaaagCCCTGG
TACCGAAAGGTGGAGGGGGGTTTACAAGGggttaaatgaaaatctctctC
AAAGTAGAAGAGGATAATTTTTATTGGATCGCCCTAAAGCTGGGAGACTA
TTaagaatgaaaaattgaaaagtcatcattttaaaaagctaaaatttaaa
ttttatttgctgcAGTTGTATAACGAAAGTTTTGTGTTGATTTCAAACAG
GCTATCTTGGTTGGAAGATCTCGCTGAGTTTAAAAAGAGATATTTAAGAA
CTCACCTTGAAAGCATAAAACACATAGTAagttactaaagtctgtctcaa
tataaatatataaattgaATATTGTACTTCTAGGAAAGAAATGAGAATTA
TCATTGTTGTTGCTTTAGATATCTGGCTGGTTGACTTTCGTTTTTCTGAG
TCAACCAGTGATCAACTGTGAGCTGTATTATTTTTGACTGaataagtttt
tttgaaaatggtgtTAGTGATAATggtcaaagtttgaaaattcataaaaa
tggtGATAATAGCACAATAGTAGAAGATTTCAAACAAATTTCACTTGATA
ATATTCTACTCGCAAATACCTTTTTAACGGTCAAAAAATCGCATTCTCAT
TCAAACAAATTCAATAGTTACAGCCATTCTTATATCTGGAAAGACTTTAG
TAAAAGTATGTTTTGAATCCATTTCTAGATATTGCAACGTAATGATGGAT
ATCATGAGTCCCTGTCCTTGAGCATATTACCATTGTTTAAACCATATATT
GTAAGTATCAGGAAAAGACTATTTAATGCTTTTTTGCTTCTTGACAAACT
GTTCCAAGGCACATCGAATGTTTTGGAAAGATTTCGAATAAAATAGACAG
AATAGTTACATTCAATTTTCTATAATCTACATAACTGTTTTTCTTTACTT
CAGGGTTTTTAATCCTGCTAAAAGTTCTGAGAAACCCTGAAATATTTCGA
TTATGTTTAATCACATCCACTTTGCTtgatttatttctaaattttcgtat
ttttaaCTCGATTTCGAACTCTTGGAACCTTTATCATAGCTGTGTATCTT
TGTATTTTCAGATTGACTATGTAGAAGGTTCATTAAAGGAAGTGCTACCC
GATGCAGATGCCAAATtaataaaagattttttccttcCAGAGGTAAAGCA
ATACTTCAAGTTTTTCTTCACCTTTTATTTAAAACTTACAAGAAATAGTt
tgggtctgaaaactttttgtagaaataatgAGGAAATTGTAAATTAATCT
AGACAATTTTCGAGACAACtccaaagattttttaaattgtcgatTTTACC
TAAAGAAAATTCCAGTAAATTCTTcgggaaaaaatgttttgaaataccCT
ACAACAGTTTACCACTCCACTGAGACTTATGCTTTTTACATTTAGCTGAT
GGTTCGCACGATATCAAAAGAGTGCAATTGTCCGGTGTTGGCTATTCGAA
GGCTGCTACTGGAGAAGAATTCTGAGACTtgatacactctttttttataa
gaataatataGATTTAGGATAAAGTATTCTAAAGAATTTGACAAAATCCA
AGGTGAACTATGCTTAACGTATTCAAAAGCTCAGGCATTTATGTTCTTGT
AGAagctattcttataaaattagcGTGTAACATGATAAAGAAATATACTG
TAGCCTATACCTTTAAGGTTATTTTTGATACTCAGTAATGCATTTGGCCC
ATTTACAATTTTACTCATTCTTGCTTCACTCAAACTGTTACTAACATCAC
CAATCTGCCTGTCTTGAAAAATTAAGTCAAAGTATTATATATATTCTAAA
TGGTAACATGATTTTATAAATTTAGACTGCAACTGTCCATACGACTACGA
CTGTTCTATTGTTATATAGAGTGTTCGATTTCccgttcttttatttttct
ataatcctaaaatatagaaataattaTAATTATGACAAATAATTATTATA
GATAATGTATATATAgatgtaaaagattttaatatGTTATATTAGATTCG
TGTTGAGTGAAGAAATGTGTGTATTTTCGCCATGTTAAACTTAAAAGTAG
TTTAAAGTATCTCTACTCTATTATTTATTGTTCCATTGACATAAATATGG
ATATTTTCGCGTTGATTGTCAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00038379TCONS_00038379Clytia hemisphaericatranscript
TCONS_00038380TCONS_00038380Clytia hemisphaericatranscript
TCONS_00038381TCONS_00038381Clytia hemisphaericatranscript
TCONS_00038382TCONS_00038382Clytia hemisphaericatranscript
TCONS_00038383TCONS_00038383Clytia hemisphaericatranscript
TCONS_00038384TCONS_00038384Clytia hemisphaericatranscript
TCONS_00038385TCONS_00038385Clytia hemisphaericatranscript
TCONS_00038386TCONS_00038386Clytia hemisphaericatranscript
TCONS_00038387TCONS_00038387Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00038383-proteinTCONS_00038383-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001839supercontigsc0001839:5873..11644 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.18	2.01	0.72	0.56	11.77	8.05	15.77	17.1	20.6	12.61	16.36	19.47	14.46	15.25	18.5	13.43	19.24	20.94	22.37	14.4	26.18	22.47	11.07	13.67	20.78	22.25	33.5	23.92	10.07	8.46