TCONS_00038384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038384
Unique NameTCONS_00038384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038384 ID=TCONS_00038384|Name=TCONS_00038384|organism=Clytia hemisphaerica|type=transcript|length=1496bp
AATCACAGCAATGAAACATACATAAAGGTTAAATATTAGGAATTGATAGA
TCATGTCAACCAAACGTAGAGGAAGCAATGGGCTTGATTGGAATAAAACT
GTAAAATTGATTGAATCCAAAAAGGATCGTAATCGCAGAAACCGAGATTA
CATAGAACAAGTAAAAACGAAGGCTCATGAATGGAATGTTTATTGCAAAA
CTACAGTTGGATTTGTTGCAATTTATGAGGAAAAAATACATTATAGTGgt
AATAATCAGTCAATGGTAAATTTTCTAAATGACGAACGAGTGCTGACGAT
TCTAAAGGAATATTGTACATTCACAGATAAGTTGGAAGTGAAGaaagttt
caagaaaaacaaatatttgtGACTGCTGCAAAGACTTTTGTCTGAAACCA
GTTAAACCGATATACTCCCAAACGTTTACTTGTGACAAGTGCCTCAAGAC
TTTTCATAGTAAATGTGTGGAGCTTGGGACGTCACAACCCCGATCATGTG
GATGTCACTTAATCACACCTCTGATCGTAGAGCATAAACGGCTATCTTGG
TTGGAAGATCTCGCTGAGTTTAAAAAGAGATATTTAAGAACTCACCTTGA
AAGCATAAAACACATAATATTGCAACGTAATGATGGATATCATGAGTCCC
TGTCCTTGAGCATATTACCATTGTTTAAACCATATATTATTGACTATGTA
GAAGGTTCATTAAAGGAAGTGCTACCCGATGCAGATGCCAAATtaataaa
agattttttccttcCAGAGCTGATGGTTCGCACGATATCAAAAGAGTGCA
ATTGTCCGGTGTTGGCTATTCGAAGGCTGCTACTGGAGAAGAATTCTGAG
ACTtgatacactctttttttataagaataatataGATTTAGGATAAAGTA
TTCTAAAGAATTTGACAAAATCCAAGGTGAACTATGCTTAACGTATTCAA
AAGCTCAGGCATTTATGTTCTTGTAGAagctattcttataaaattagcGT
GTAACATGATAAAGAAATATACTGTAGCCTATACCTTTAAGGTTATTTTT
GATACTCAGTAATGCATTTGGCCCATTTACAATTTTACTCATTCTTGCTT
CACTCAAACTGTTACTAACATCACCAATCTGCCTGTCTTGAAAAATTAAG
TCAAAGTATTATATATATTCTAAATGGTAACATGATTTTATAAATTTAGA
CTGCAACTGTCCATACGACTACGACTGTTCTATTGTTATATAGAGTGTTC
GATTTCccgttcttttatttttctataatcctaaaatatagaaataatta
TAATTATGACAAATAATTATTATAGATAATGTATATATAgatgtaaaaga
ttttaatatGTTATATTAGATTCGTGTTGAGTGAAGAAATGTGTGTATTT
TCGCCATGTTAAACTTAAAAGTAGTTTAAAGTATCTCTACTCTATTATTT
ATTGTTCCATTGACATAAATATGGATATTTTCGCGTTGATTGTCAG
Run BLAST on NCBI

transcript from alignment at sc0001839:5952..11644+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038384 ID=TCONS_00038384|Name=TCONS_00038384|organism=Clytia hemisphaerica|type=transcript|length=5693bp|location=Sequence derived from alignment at sc0001839:5952..11644+ (Clytia hemisphaerica)
AATCACAGCAATGTAAAAACTTGTTTACTTCAACACAACAATATAATATC
GAACTATTTGCCTTATTACTTATTCGCACtgatgaaaatttagagaatgA
TTTATTCCTTAACCATAtctttattaccaaaataattttctatatAATAG
CTAAGGACACCATGTAATGACCTGATTTACTTTGAAAGCCTGCTCAAATA
GTATTCTTTTCTAATTCAACATTATGTTTTCACCAAATTTATCcaacaat
caagcaaaaattatTAGGAAAAATCTATGCCCAGCGTAGGAAGAaactta
aaaatatcaaaaccaaaCAACTGGTAAGTCAAATCATTTTcgacattttt
aaaaagttgggAAAATGGTAATCGTCAATGCTTCATCAGTGTTTATTATT
TCGCAGTATAACATtaacaaagaaatgaaaaattatgcGATGCTTTGCTT
ACCTTGATTTTTATTCACTTAAATTTAACTAGCTATAGCTACTTAGTGTG
TCCTTTTAATCAAAAGCAACCATTCGATAGTCAACATTCAACCAATTGAT
AGTCAATAATCAATCAATGATTTGTCGAAAATCAAGTACTTCTTTTCTTT
AATGACCACAAAATACATACAAATCAGAAAGTTTATACATCATATTTAAT
AAGTCATATTAATTTCGTTTTCAATCTTTTAAAATCGTACCGTGATGGCA
CGTTCTGACACAATCATAATAATTAGATATTCTTGCTGATTAATCTTTTT
AACCTTCTAAAAGGAGTCAGTCATAAGGTATTTGGTTATATTTTGTAACA
TTGATCGGTTTcatttctcttttcttgttaaagGAAACATACATAAAGGT
TAAATATTAGGAATTGATAGATCATGTCAACCAAACGTAGAGGAAGCAAT
GGGCTTGATTGGAATAAAACTGTAAGTCCATAATTATATTGAACTTTaac
taaattatttttgtttcatcAGAAATTTCAGGCTGATTTTGGATTCTTAC
AAGATTGTTAGAGTATTTTTTATGGTTCTATTACTGTTTTCCTATTTCAC
TGCCTTGAATTGCAGTGTtgtgttttaaataatttaaaatagaaTCTCAG
CAAATATATTTCATGCCAATTAACGAATTTGGATTGTATTTACTGGACAG
CGGCCGATTTTTTAGGGACGCTGAAAGACGGGGCACCAAAAGGCGTctgt
gatttctaattttggcgccccttatCTTAAAATTAGCAGTTTTCACTggt
tttcagccaaaaagaaggaaaatatccaaaaattgtaGTGTTTTGGCCAT
TTTATTCTTTTCAGGTAAAATTGATTGAATCCAAAAAGGATCGTAATCGC
AGAAACCGAGATTACATAGAACAAGTAAAAACGAAGGTAAAAATGACGAC
AGCTTCAGTGACTCACTACTCAGAAGTTTTTTAGAAGGCATAGtttcatt
tattttaaaaatttgtgttACTTACCGAATTTTCTTACTCAGAAAAAAAG
TACTCGTGTGGTTGTGGAGAAATTTTCCTAACCTTCTTTGATTTAAATTT
ATGTTAACTATTTTCGTCAGGCTCATGAATGGAATGTTTATTGCAAAACT
ACAGTTGGATTTGTTGCAATTTATGAGGAAAAAATACATTATAGTGGTAG
GATTCAAACTCTTAACTTTTTACCGACTTGCTTAAATGGTTTGTGGACCG
TGTCGTAAAATATTGCCTTTGTCAATCATCCGGCGTTTCATAAAAGAAAA
CAGCAAAATTGTTCTACAACTTAAAGTTAAAACCTGACGGCAGATTGGGG
GGGGGCAGACGTCACCTCCTCTCGTTACATTAGCATTATCAAAATATGAT
TATAATTGTTTTATTTGAGCCAAGAatccatttttcatttcaaaggtAAT
AATCAGTCAATGGTAAATTTTCTAAATGACGAACGAGTGCTGACGATTCT
AAAGGAATATTGTACATTCACAGGTATTGTATTTGATCACTCTTGGTTAT
TTTTCTTTCCATTGAATTCTGGTGCTTTTTTACCTTTTCTATATTTAGAA
GAAGAGTTATGAAAATGGCTTATGAGGATTGCTATGCATGGTAGAATTCT
GACCgcttttgaaaatattggctGGAAAAGGATTCTGACCGCTTTATTTG
GGAAACTCTGCATATGTAAAATTCTTTATTgccattttatattttcttta
aaattttggcaaaataaaaagttttttcatagcAAAATAGTAATCATCAA
ATTCAGGATAGGAGAAAAGAAACGACTCCCTTGTAATATTACAATATTTC
TACTAAACAGATAAGTTGGAAGTGAAGaaagtttcaagaaaaacaaatat
ttgtGGTATGAGTGGTTTTCTCTTTAAAATCTTTAAGCTTTCATATAATG
TAATGTAATCCTTTTAGAATCCTTGAGTTAATCCATTTCTTGTAATAATT
ATATTCCAGCtactaaaaaagaaagaaaaacaaaaaggaaaactGGAATA
AATCACCATTCGACTGAAATAAGTAAATATGATTTATCGCAGAAAATGTT
ATCAGCAATTCACTGGAATAAGAATAAATTCCTTGTTATAGTGAcagaaa
ttcaaaataatttctataatttGTAGAGATAATTTGTACTTGCTCTGGAA
ACGTTAATAGGATGGGAAGTAGATTATCAAAGCTGGCAAGTAACAGATTT
ACATTTTGTAACTTCTCGTTGACAAACTGTAATCAAAACAATATTTGAAT
cctattttagcaaaaaagagaaaagaagaaaagaaagctgaagaaaatag
ctttcacactaaaacaaaacaagtaaacaaactttCACCGCACATTTCGA
TAATTCATTAGGGTAAATTACCAAAAGGTTAATACGATAGATCTAACTAA
AGaactttcttaaaaattgaaaaaatttatttcgtggTTCAATCTACGAA
GTTTTTCcatactttttgataaaaggtaTATATTTGCTTGTCACAGTTTT
TCTTTGACACTCTATATTTTTTACTGAACAACCGATCCCTTTCCGATAAG
ATATCCCTCGTCCGTTATATTTGTTGATTGTTTGTTTTAGACTGCTGCAA
AGACTTTTGTCTGAAACCAGTTAAACCGATATACTCCCAAACGTTTACTT
GTGACAAGTGCCTCAAGACTTTTCATAGTAAATGTGTGGAGCTTGGGACG
TCACAACCCCGATCATGTGGATGTCACTTAATCACACCTCTGATCGTAGA
GCATAAACGGTAATTGTGTACCTCTGAGGCTTTTAAAAAGAAAAGGTTCC
TGAGACtttaattataattttaatttcataTACGTGTTTATTTATGGTCA
ATCTTATAAATTTGACAACGGGATATCTCCTCTCATAGTAAGGGCTATCA
TTAGACTGAGAGGGAAAGATTTCCTAAGGTCTCATCTCACAGCTGCATTT
CctgaaaaagattttacaagAGCGATAAGggtaaatttgtaaaaattttc
tgCAAGGAAACTCAAATCAAGTCTCTGGTGTGACTATACCATCGCGtttt
tttctgataaaaaagCCCTGGTACCGAAAGGTGGAGGGGGGTTTACAAGG
ggttaaatgaaaatctctctCAAAGTAGAAGAGGATAATTTTTATTGGAT
CGCCCTAAAGCTGGGAGACTATTaagaatgaaaaattgaaaagtcatcat
tttaaaaagctaaaatttaaattttatttgctgcAGTTGTATAACGAAAG
TTTTGTGTTGATTTCAAACAGGCTATCTTGGTTGGAAGATCTCGCTGAGT
TTAAAAAGAGATATTTAAGAACTCACCTTGAAAGCATAAAACACATAGTA
agttactaaagtctgtctcaatataaatatataaattgaATATTGTACTT
CTAGGAAAGAAATGAGAATTATCATTGTTGTTGCTTTAGATATCTGGCTG
GTTGACTTTCGTTTTTCTGAGTCAACCAGTGATCAACTGTGAGCTGTATT
ATTTTTGACTGaataagtttttttgaaaatggtgtTAGTGATAATggtca
aagtttgaaaattcataaaaatggtGATAATAGCACAATAGTAGAAGATT
TCAAACAAATTTCACTTGATAATATTCTACTCGCAAATACCTTTTTAACG
GTCAAAAAATCGCATTCTCATTCAAACAAATTCAATAGTTACAGCCATTC
TTATATCTGGAAAGACTTTAGTAAAAGTATGTTTTGAATCCATTTCTAGA
TATTGCAACGTAATGATGGATATCATGAGTCCCTGTCCTTGAGCATATTA
CCATTGTTTAAACCATATATTGTAAGTATCAGGAAAAGACTATTTAATGC
TTTTTTGCTTCTTGACAAACTGTTCCAAGGCACATCGAATGTTTTGGAAA
GATTTCGAATAAAATAGACAGAATAGTTACATTCAATTTTCTATAATCTA
CATAACTGTTTTTCTTTACTTCAGGGTTTTTAATCCTGCTAAAAGTTCTG
AGAAACCCTGAAATATTTCGATTATGTTTAATCACATCCACTTTGCTtga
tttatttctaaattttcgtatttttaaCTCGATTTCGAACTCTTGGAACC
TTTATCATAGCTGTGTATCTTTGTATTTTCAGATTGACTATGTAGAAGGT
TCATTAAAGGAAGTGCTACCCGATGCAGATGCCAAATtaataaaagattt
tttccttcCAGAGGTAAAGCAATACTTCAAGTTTTTCTTCACCTTTTATT
TAAAACTTACAAGAAATAGTttgggtctgaaaactttttgtagaaataat
gAGGAAATTGTAAATTAATCTAGACAATTTTCGAGACAACtccaaagatt
ttttaaattgtcgatTTTACCTAAAGAAAATTCCAGTAAATTCTTcggga
aaaaatgttttgaaataccCTACAACAGTTTACCACTCCACTGAGACTTA
TGCTTTTTACATTTAGCTGATGGTTCGCACGATATCAAAAGAGTGCAATT
GTCCGGTGTTGGCTATTCGAAGGCTGCTACTGGAGAAGAATTCTGAGACT
tgatacactctttttttataagaataatataGATTTAGGATAAAGTATTC
TAAAGAATTTGACAAAATCCAAGGTGAACTATGCTTAACGTATTCAAAAG
CTCAGGCATTTATGTTCTTGTAGAagctattcttataaaattagcGTGTA
ACATGATAAAGAAATATACTGTAGCCTATACCTTTAAGGTTATTTTTGAT
ACTCAGTAATGCATTTGGCCCATTTACAATTTTACTCATTCTTGCTTCAC
TCAAACTGTTACTAACATCACCAATCTGCCTGTCTTGAAAAATTAAGTCA
AAGTATTATATATATTCTAAATGGTAACATGATTTTATAAATTTAGACTG
CAACTGTCCATACGACTACGACTGTTCTATTGTTATATAGAGTGTTCGAT
TTCccgttcttttatttttctataatcctaaaatatagaaataattaTAA
TTATGACAAATAATTATTATAGATAATGTATATATAgatgtaaaagattt
taatatGTTATATTAGATTCGTGTTGAGTGAAGAAATGTGTGTATTTTCG
CCATGTTAAACTTAAAAGTAGTTTAAAGTATCTCTACTCTATTATTTATT
GTTCCATTGACATAAATATGGATATTTTCGCGTTGATTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022983XLOC_022983Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038384-exon-sc0001839-1491911889:5952..5963TCONS_00038384-exon-sc0001839-1491911889:5952..5963Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1510915933:5952..5963TCONS_00038384-exon-sc0001839-1510915933:5952..5963Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1575043694:5952..5963TCONS_00038384-exon-sc0001839-1575043694:5952..5963Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1491911889:6785..6872TCONS_00038384-exon-sc0001839-1491911889:6785..6872Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1510915933:6785..6872TCONS_00038384-exon-sc0001839-1510915933:6785..6872Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1575043694:6785..6872TCONS_00038384-exon-sc0001839-1575043694:6785..6872Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1491911889:7266..7337TCONS_00038384-exon-sc0001839-1491911889:7266..7337Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1510915933:7266..7337TCONS_00038384-exon-sc0001839-1510915933:7266..7337Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1575043694:7266..7337TCONS_00038384-exon-sc0001839-1575043694:7266..7337Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1491911889:7522..7597TCONS_00038384-exon-sc0001839-1491911889:7522..7597Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1510915933:7522..7597TCONS_00038384-exon-sc0001839-1510915933:7522..7597Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1575043694:7522..7597TCONS_00038384-exon-sc0001839-1575043694:7522..7597Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1491911889:7847..7924TCONS_00038384-exon-sc0001839-1491911889:7847..7924Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1510915933:7847..7924TCONS_00038384-exon-sc0001839-1510915933:7847..7924Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1575043694:7847..7924TCONS_00038384-exon-sc0001839-1575043694:7847..7924Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1491911889:8262..8306TCONS_00038384-exon-sc0001839-1491911889:8262..8306Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1510915933:8262..8306TCONS_00038384-exon-sc0001839-1510915933:8262..8306Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1575043694:8262..8306TCONS_00038384-exon-sc0001839-1575043694:8262..8306Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1491911889:9042..9210TCONS_00038384-exon-sc0001839-1491911889:9042..9210Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1510915933:9042..9210TCONS_00038384-exon-sc0001839-1510915933:9042..9210Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1575043694:9042..9210TCONS_00038384-exon-sc0001839-1575043694:9042..9210Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1491911889:9723..9798TCONS_00038384-exon-sc0001839-1491911889:9723..9798Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1510915933:9723..9798TCONS_00038384-exon-sc0001839-1510915933:9723..9798Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1575043694:9723..9798TCONS_00038384-exon-sc0001839-1575043694:9723..9798Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1491911889:10201..10272TCONS_00038384-exon-sc0001839-1491911889:10201..10272Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1510915933:10201..10272TCONS_00038384-exon-sc0001839-1510915933:10201..10272Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1575043694:10201..10272TCONS_00038384-exon-sc0001839-1575043694:10201..10272Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1491911889:10584..10664TCONS_00038384-exon-sc0001839-1491911889:10584..10664Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1510915933:10584..10664TCONS_00038384-exon-sc0001839-1510915933:10584..10664Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1575043694:10584..10664TCONS_00038384-exon-sc0001839-1575043694:10584..10664Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1491911889:10918..11644TCONS_00038384-exon-sc0001839-1491911889:10918..11644Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1510915933:10918..11644TCONS_00038384-exon-sc0001839-1510915933:10918..11644Clytia hemisphaericaexon
TCONS_00038384-exon-sc0001839-1575043694:10918..11644TCONS_00038384-exon-sc0001839-1575043694:10918..11644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001839supercontigsc0001839:5952..11644 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.981809	0.955631	0.0991151	0	0	0	6.38664e-07	0	2.94412	0.309081	3.82624	1.27261	2.01509	4.8193e-07	3.58472	0.87671	3.5125	1.78852	3.20221	2.60235	4.20263	6.25843	3.04502	1.04343	1.32939e-08	0	4.87861	5.66196	0.770691	0.443791
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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