TCONS_00038385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038385
Unique NameTCONS_00038385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038385 ID=TCONS_00038385|Name=TCONS_00038385|organism=Clytia hemisphaerica|type=transcript|length=1591bp
ATTTTGTAACATTGATCGGTTTcatttctcttttcttgttaaagGAAACA
TACATAAAGGTTAAATATTAGGAATTGATAGATCATGTCAACCAAACGTA
GAGGAAGCAATGGGCTTGATTGGAATAAAACTGTAAAATTGATTGAATCC
AAAAAGGATCGTAATCGCAGAAACCGAGATTACATAGAACAAGTAAAAAC
GAAGGCTCATGAATGGAATGTTTATTGCAAAACTACAGTTGGATTTGTTG
CAATTTATGAGGAAAAAATACATTATAGTGgtAATAATCAGTCAATGGTA
AATTTTCTAAATGACGAACGAGTGCTGACGATTCTAAAGGAATATTGTAC
ATTCACAGATAAGTTGGAAGTGAAGaaagtttcaagaaaaacaaatattt
gtGCtactaaaaaagaaagaaaaacaaaaaggaaaactGGAATAAATCAC
CATTCGACTGAAATAAACTGCTGCAAAGACTTTTGTCTGAAACCAGTTAA
ACCGATATACTCCCAAACGTTTACTTGTGACAAGTGCCTCAAGACTTTTC
ATAGTAAATGTGTGGAGCTTGGGACGTCACAACCCCGATCATGTGGATGT
CACTTAATCACACCTCTGATCGTAGAGCATAAACGGCTATCTTGGTTGGA
AGATCTCGCTGAGTTTAAAAAGAGATATTTAAGAACTCACCTTGAAAGCA
TAAAACACATAATATTGCAACGTAATGATGGATATCATGAGTCCCTGTCC
TTGAGCATATTACCATTGTTTAAACCATATATTATTGACTATGTAGAAGG
TTCATTAAAGGAAGTGCTACCCGATGCAGATGCCAAATtaataaaagatt
ttttccttcCAGAGCTGATGGTTCGCACGATATCAAAAGAGTGCAATTGT
CCGGTGTTGGCTATTCGAAGGCTGCTACTGGAGAAGAATTCTGAGACTtg
atacactctttttttataagaataatataGATTTAGGATAAAGTATTCTA
AAGAATTTGACAAAATCCAAGGTGAACTATGCTTAACGTATTCAAAAGCT
CAGGCATTTATGTTCTTGTAGAagctattcttataaaattagcGTGTAAC
ATGATAAAGAAATATACTGTAGCCTATACCTTTAAGGTTATTTTTGATAC
TCAGTAATGCATTTGGCCCATTTACAATTTTACTCATTCTTGCTTCACTC
AAACTGTTACTAACATCACCAATCTGCCTGTCTTGAAAAATTAAGTCAAA
GTATTATATATATTCTAAATGGTAACATGATTTTATAAATTTAGACTGCA
ACTGTCCATACGACTACGACTGTTCTATTGTTATATAGAGTGTTCGATTT
CccgttcttttatttttctataatcctaaaatatagaaataattaTAATT
ATGACAAATAATTATTATAGATAATGTATATATAgatgtaaaagatttta
atatGTTATATTAGATTCGTGTTGAGTGAAGAAATGTGTGTATTTTCGCC
ATGTTAAACTTAAAAGTAGTTTAAAGTATCTCTACTCTATTATTTATTGT
TCCATTGACATAAATATGGATATTTTCGCGTTGATTGTCAG
Run BLAST on NCBI

transcript from alignment at sc0001839:6741..11644+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038385 ID=TCONS_00038385|Name=TCONS_00038385|organism=Clytia hemisphaerica|type=transcript|length=4904bp|location=Sequence derived from alignment at sc0001839:6741..11644+ (Clytia hemisphaerica)
ATTTTGTAACATTGATCGGTTTcatttctcttttcttgttaaagGAAACA
TACATAAAGGTTAAATATTAGGAATTGATAGATCATGTCAACCAAACGTA
GAGGAAGCAATGGGCTTGATTGGAATAAAACTGTAAGTCCATAATTATAT
TGAACTTTaactaaattatttttgtttcatcAGAAATTTCAGGCTGATTT
TGGATTCTTACAAGATTGTTAGAGTATTTTTTATGGTTCTATTACTGTTT
TCCTATTTCACTGCCTTGAATTGCAGTGTtgtgttttaaataatttaaaa
tagaaTCTCAGCAAATATATTTCATGCCAATTAACGAATTTGGATTGTAT
TTACTGGACAGCGGCCGATTTTTTAGGGACGCTGAAAGACGGGGCACCAA
AAGGCGTctgtgatttctaattttggcgccccttatCTTAAAATTAGCAG
TTTTCACTggttttcagccaaaaagaaggaaaatatccaaaaattgtaGT
GTTTTGGCCATTTTATTCTTTTCAGGTAAAATTGATTGAATCCAAAAAGG
ATCGTAATCGCAGAAACCGAGATTACATAGAACAAGTAAAAACGAAGGTA
AAAATGACGACAGCTTCAGTGACTCACTACTCAGAAGTTTTTTAGAAGGC
ATAGtttcatttattttaaaaatttgtgttACTTACCGAATTTTCTTACT
CAGAAAAAAAGTACTCGTGTGGTTGTGGAGAAATTTTCCTAACCTTCTTT
GATTTAAATTTATGTTAACTATTTTCGTCAGGCTCATGAATGGAATGTTT
ATTGCAAAACTACAGTTGGATTTGTTGCAATTTATGAGGAAAAAATACAT
TATAGTGGTAGGATTCAAACTCTTAACTTTTTACCGACTTGCTTAAATGG
TTTGTGGACCGTGTCGTAAAATATTGCCTTTGTCAATCATCCGGCGTTTC
ATAAAAGAAAACAGCAAAATTGTTCTACAACTTAAAGTTAAAACCTGACG
GCAGATTGGGGGGGGGCAGACGTCACCTCCTCTCGTTACATTAGCATTAT
CAAAATATGATTATAATTGTTTTATTTGAGCCAAGAatccatttttcatt
tcaaaggtAATAATCAGTCAATGGTAAATTTTCTAAATGACGAACGAGTG
CTGACGATTCTAAAGGAATATTGTACATTCACAGGTATTGTATTTGATCA
CTCTTGGTTATTTTTCTTTCCATTGAATTCTGGTGCTTTTTTACCTTTTC
TATATTTAGAAGAAGAGTTATGAAAATGGCTTATGAGGATTGCTATGCAT
GGTAGAATTCTGACCgcttttgaaaatattggctGGAAAAGGATTCTGAC
CGCTTTATTTGGGAAACTCTGCATATGTAAAATTCTTTATTgccatttta
tattttctttaaaattttggcaaaataaaaagttttttcatagcAAAATA
GTAATCATCAAATTCAGGATAGGAGAAAAGAAACGACTCCCTTGTAATAT
TACAATATTTCTACTAAACAGATAAGTTGGAAGTGAAGaaagtttcaaga
aaaacaaatatttgtGGTATGAGTGGTTTTCTCTTTAAAATCTTTAAGCT
TTCATATAATGTAATGTAATCCTTTTAGAATCCTTGAGTTAATCCATTTC
TTGTAATAATTATATTCCAGCtactaaaaaagaaagaaaaacaaaaagga
aaactGGAATAAATCACCATTCGACTGAAATAAGTAAATATGATTTATCG
CAGAAAATGTTATCAGCAATTCACTGGAATAAGAATAAATTCCTTGTTAT
AGTGAcagaaattcaaaataatttctataatttGTAGAGATAATTTGTAC
TTGCTCTGGAAACGTTAATAGGATGGGAAGTAGATTATCAAAGCTGGCAA
GTAACAGATTTACATTTTGTAACTTCTCGTTGACAAACTGTAATCAAAAC
AATATTTGAATcctattttagcaaaaaagagaaaagaagaaaagaaagct
gaagaaaatagctttcacactaaaacaaaacaagtaaacaaactttCACC
GCACATTTCGATAATTCATTAGGGTAAATTACCAAAAGGTTAATACGATA
GATCTAACTAAAGaactttcttaaaaattgaaaaaatttatttcgtggTT
CAATCTACGAAGTTTTTCcatactttttgataaaaggtaTATATTTGCTT
GTCACAGTTTTTCTTTGACACTCTATATTTTTTACTGAACAACCGATCCC
TTTCCGATAAGATATCCCTCGTCCGTTATATTTGTTGATTGTTTGTTTTA
GACTGCTGCAAAGACTTTTGTCTGAAACCAGTTAAACCGATATACTCCCA
AACGTTTACTTGTGACAAGTGCCTCAAGACTTTTCATAGTAAATGTGTGG
AGCTTGGGACGTCACAACCCCGATCATGTGGATGTCACTTAATCACACCT
CTGATCGTAGAGCATAAACGGTAATTGTGTACCTCTGAGGCTTTTAAAAA
GAAAAGGTTCCTGAGACtttaattataattttaatttcataTACGTGTTT
ATTTATGGTCAATCTTATAAATTTGACAACGGGATATCTCCTCTCATAGT
AAGGGCTATCATTAGACTGAGAGGGAAAGATTTCCTAAGGTCTCATCTCA
CAGCTGCATTTCctgaaaaagattttacaagAGCGATAAGggtaaatttg
taaaaattttctgCAAGGAAACTCAAATCAAGTCTCTGGTGTGACTATAC
CATCGCGtttttttctgataaaaaagCCCTGGTACCGAAAGGTGGAGGGG
GGTTTACAAGGggttaaatgaaaatctctctCAAAGTAGAAGAGGATAAT
TTTTATTGGATCGCCCTAAAGCTGGGAGACTATTaagaatgaaaaattga
aaagtcatcattttaaaaagctaaaatttaaattttatttgctgcAGTTG
TATAACGAAAGTTTTGTGTTGATTTCAAACAGGCTATCTTGGTTGGAAGA
TCTCGCTGAGTTTAAAAAGAGATATTTAAGAACTCACCTTGAAAGCATAA
AACACATAGTAagttactaaagtctgtctcaatataaatatataaattga
ATATTGTACTTCTAGGAAAGAAATGAGAATTATCATTGTTGTTGCTTTAG
ATATCTGGCTGGTTGACTTTCGTTTTTCTGAGTCAACCAGTGATCAACTG
TGAGCTGTATTATTTTTGACTGaataagtttttttgaaaatggtgtTAGT
GATAATggtcaaagtttgaaaattcataaaaatggtGATAATAGCACAAT
AGTAGAAGATTTCAAACAAATTTCACTTGATAATATTCTACTCGCAAATA
CCTTTTTAACGGTCAAAAAATCGCATTCTCATTCAAACAAATTCAATAGT
TACAGCCATTCTTATATCTGGAAAGACTTTAGTAAAAGTATGTTTTGAAT
CCATTTCTAGATATTGCAACGTAATGATGGATATCATGAGTCCCTGTCCT
TGAGCATATTACCATTGTTTAAACCATATATTGTAAGTATCAGGAAAAGA
CTATTTAATGCTTTTTTGCTTCTTGACAAACTGTTCCAAGGCACATCGAA
TGTTTTGGAAAGATTTCGAATAAAATAGACAGAATAGTTACATTCAATTT
TCTATAATCTACATAACTGTTTTTCTTTACTTCAGGGTTTTTAATCCTGC
TAAAAGTTCTGAGAAACCCTGAAATATTTCGATTATGTTTAATCACATCC
ACTTTGCTtgatttatttctaaattttcgtatttttaaCTCGATTTCGAA
CTCTTGGAACCTTTATCATAGCTGTGTATCTTTGTATTTTCAGATTGACT
ATGTAGAAGGTTCATTAAAGGAAGTGCTACCCGATGCAGATGCCAAATta
ataaaagattttttccttcCAGAGGTAAAGCAATACTTCAAGTTTTTCTT
CACCTTTTATTTAAAACTTACAAGAAATAGTttgggtctgaaaacttttt
gtagaaataatgAGGAAATTGTAAATTAATCTAGACAATTTTCGAGACAA
CtccaaagattttttaaattgtcgatTTTACCTAAAGAAAATTCCAGTAA
ATTCTTcgggaaaaaatgttttgaaataccCTACAACAGTTTACCACTCC
ACTGAGACTTATGCTTTTTACATTTAGCTGATGGTTCGCACGATATCAAA
AGAGTGCAATTGTCCGGTGTTGGCTATTCGAAGGCTGCTACTGGAGAAGA
ATTCTGAGACTtgatacactctttttttataagaataatataGATTTAGG
ATAAAGTATTCTAAAGAATTTGACAAAATCCAAGGTGAACTATGCTTAAC
GTATTCAAAAGCTCAGGCATTTATGTTCTTGTAGAagctattcttataaa
attagcGTGTAACATGATAAAGAAATATACTGTAGCCTATACCTTTAAGG
TTATTTTTGATACTCAGTAATGCATTTGGCCCATTTACAATTTTACTCAT
TCTTGCTTCACTCAAACTGTTACTAACATCACCAATCTGCCTGTCTTGAA
AAATTAAGTCAAAGTATTATATATATTCTAAATGGTAACATGATTTTATA
AATTTAGACTGCAACTGTCCATACGACTACGACTGTTCTATTGTTATATA
GAGTGTTCGATTTCccgttcttttatttttctataatcctaaaatataga
aataattaTAATTATGACAAATAATTATTATAGATAATGTATATATAgat
gtaaaagattttaatatGTTATATTAGATTCGTGTTGAGTGAAGAAATGT
GTGTATTTTCGCCATGTTAAACTTAAAAGTAGTTTAAAGTATCTCTACTC
TATTATTTATTGTTCCATTGACATAAATATGGATATTTTCGCGTTGATTG
TCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022983XLOC_022983Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038385-exon-sc0001839-1491911889:6741..6872TCONS_00038385-exon-sc0001839-1491911889:6741..6872Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1510915933:6741..6872TCONS_00038385-exon-sc0001839-1510915933:6741..6872Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1575043694:6741..6872TCONS_00038385-exon-sc0001839-1575043694:6741..6872Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1491911889:7266..7337TCONS_00038385-exon-sc0001839-1491911889:7266..7337Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1510915933:7266..7337TCONS_00038385-exon-sc0001839-1510915933:7266..7337Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1575043694:7266..7337TCONS_00038385-exon-sc0001839-1575043694:7266..7337Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1491911889:7522..7597TCONS_00038385-exon-sc0001839-1491911889:7522..7597Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1510915933:7522..7597TCONS_00038385-exon-sc0001839-1510915933:7522..7597Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1575043694:7522..7597TCONS_00038385-exon-sc0001839-1575043694:7522..7597Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1491911889:7847..7924TCONS_00038385-exon-sc0001839-1491911889:7847..7924Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1510915933:7847..7924TCONS_00038385-exon-sc0001839-1510915933:7847..7924Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1575043694:7847..7924TCONS_00038385-exon-sc0001839-1575043694:7847..7924Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1491911889:8262..8306TCONS_00038385-exon-sc0001839-1491911889:8262..8306Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1510915933:8262..8306TCONS_00038385-exon-sc0001839-1510915933:8262..8306Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1575043694:8262..8306TCONS_00038385-exon-sc0001839-1575043694:8262..8306Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1491911889:8411..8473TCONS_00038385-exon-sc0001839-1491911889:8411..8473Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1510915933:8411..8473TCONS_00038385-exon-sc0001839-1510915933:8411..8473Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1575043694:8411..8473TCONS_00038385-exon-sc0001839-1575043694:8411..8473Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1491911889:9042..9210TCONS_00038385-exon-sc0001839-1491911889:9042..9210Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1510915933:9042..9210TCONS_00038385-exon-sc0001839-1510915933:9042..9210Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1575043694:9042..9210TCONS_00038385-exon-sc0001839-1575043694:9042..9210Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1491911889:9723..9798TCONS_00038385-exon-sc0001839-1491911889:9723..9798Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1510915933:9723..9798TCONS_00038385-exon-sc0001839-1510915933:9723..9798Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1575043694:9723..9798TCONS_00038385-exon-sc0001839-1575043694:9723..9798Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1491911889:10201..10272TCONS_00038385-exon-sc0001839-1491911889:10201..10272Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1510915933:10201..10272TCONS_00038385-exon-sc0001839-1510915933:10201..10272Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1575043694:10201..10272TCONS_00038385-exon-sc0001839-1575043694:10201..10272Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1491911889:10584..10664TCONS_00038385-exon-sc0001839-1491911889:10584..10664Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1510915933:10584..10664TCONS_00038385-exon-sc0001839-1510915933:10584..10664Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1575043694:10584..10664TCONS_00038385-exon-sc0001839-1575043694:10584..10664Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1491911889:10918..11644TCONS_00038385-exon-sc0001839-1491911889:10918..11644Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1510915933:10918..11644TCONS_00038385-exon-sc0001839-1510915933:10918..11644Clytia hemisphaericaexon
TCONS_00038385-exon-sc0001839-1575043694:10918..11644TCONS_00038385-exon-sc0001839-1575043694:10918..11644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001839supercontigsc0001839:6741..11644 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100314	0	0.07174	0	6.07211	4.68349	7.87123	7.03359	9.23039	8.07129	4.72271	9.36691	7.17522	7.10115	10.4575	7.69525	10.3287	13.3107	11.3278	7.80593	13.8379	9.97466	4.54571	6.94644	7.95524	10.0562	16.0334	8.34691	5.84918	4.20847
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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