TCONS_00038380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038380
Unique NameTCONS_00038380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038380 ID=TCONS_00038380|Name=TCONS_00038380|organism=Clytia hemisphaerica|type=transcript|length=1609bp
TATGTTATTCACGTAATCACAGCAATGTAAAAACTTGTTTACTTCAACAC
AACAATATAATATCGAACTATTTGCCTTATTACTTATTCGCACtgatgaa
aatttagagaatgATTTATTCCTTAACCATAtctttattaccaaaataat
tttctatatAATAGCTAAGGACACCATGTAATGACCTGATTTACTTTGAA
AGCCTGCTCAAATAGTATTCTTTTCTAATTCAACATTATGTTTTCACCAA
ATTTATCcaacaatcaagcaaaaattatTAGGAAAAATCTATGCCCAGCG
TAGGAAGAaacttaaaaatatcaaaaccaaaCAACTGGTAAGTCAAATCA
TTTTcgacatttttaaaaagttgggAAAATGGTAATCGTCAATGCTTCAT
CAGTGTTTATTATTTCGCAGTATAACATtaacaaagaaatgaaaaattat
gcGATGCTTTGCTTACCTTGATTTTTATTCACTTAAATTTAACTAGCTAT
AGCTACTTAGTGTGTCCTTTTAATCAAAAGCAACCATTCGATAGTCAACA
TTCAACCAATTGATAGTCAATAATCAATCAATGATTTGTCGAAAATCAAG
TACTTCTTTTCTTTAATGACCACAAAATACATACAAATCAGAAAGTTTAT
ACATCATATTTAATAAGTCATATTAATTTCGTTTTCAATCTTTTAAAATC
GTACCGTGATGGCACGTTCTGACACAATCATAATAATTAGATATTCTTGC
TGATTAATCTTTTTAACCTTCTAAAAGGAGTCAGTCATAAGGTATTTGGT
TATATTTTGTAACATTGATCGGTTTcatttctcttttcttgttaaagGAA
ACATACATAAAGGTTAAATATTAGGAATTGATAGATCATGTCAACCAAAC
GTAGAGGAAGCAATGGGCTTGATTGGAATAAAACTGTAAAATTGATTGAA
TCCAAAAAGGATCGTAATCGCAGAAACCGAGATTACATAGAACAAGTAAA
AACGAAGGCTCATGAATGGAATGTTTATTGCAAAACTACAGTTGGATTTG
TTGCAATTTATGAGGAAAAAATACATTATAGTGgtAATAATCAGTCAATG
GTAAATTTTCTAAATGACGAACGAGTGCTGACGATTCTAAAGGAATATTG
TACATTCACAGATAAGTTGGAAGTGAAGaaagtttcaagaaaaacaaata
tttgtGGTATGAGTGGTTTTCTCTTTAAAATCTTTAAGCTTTCATATAAT
GTAATGTAATCCTTTTAGAATCCTTGAGTTAATCCATTTCTTGTAATAAT
TATATTCCAGCtactaaaaaagaaagaaaaacaaaaaggaaaactGGAAT
AAATCACCATTCGACTGAAATAAGTAAATATGATTTATCGCAGAAAATGT
TATCAGCAATTCACTGGAATAAGAATAAATTCCTTGTTATAGTGAcagaa
attcaaaataatttctataatttGTAGAGATAATTTGTACTTGCTCTGGA
AACGTTAATAGGATGGGAAGTAGATTATCAAAGCTGGCAAGTAACAGATT
TACATTTTGTAACTTCTCGTTGACAAACTGTAATCAAAACAATATTTGAA
Tcctatttt
Run BLAST on NCBI

transcript from alignment at sc0001839:5938..8709+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038380 ID=TCONS_00038380|Name=TCONS_00038380|organism=Clytia hemisphaerica|type=transcript|length=2772bp|location=Sequence derived from alignment at sc0001839:5938..8709+ (Clytia hemisphaerica)
TATGTTATTCACGTAATCACAGCAATGTAAAAACTTGTTTACTTCAACAC
AACAATATAATATCGAACTATTTGCCTTATTACTTATTCGCACtgatgaa
aatttagagaatgATTTATTCCTTAACCATAtctttattaccaaaataat
tttctatatAATAGCTAAGGACACCATGTAATGACCTGATTTACTTTGAA
AGCCTGCTCAAATAGTATTCTTTTCTAATTCAACATTATGTTTTCACCAA
ATTTATCcaacaatcaagcaaaaattatTAGGAAAAATCTATGCCCAGCG
TAGGAAGAaacttaaaaatatcaaaaccaaaCAACTGGTAAGTCAAATCA
TTTTcgacatttttaaaaagttgggAAAATGGTAATCGTCAATGCTTCAT
CAGTGTTTATTATTTCGCAGTATAACATtaacaaagaaatgaaaaattat
gcGATGCTTTGCTTACCTTGATTTTTATTCACTTAAATTTAACTAGCTAT
AGCTACTTAGTGTGTCCTTTTAATCAAAAGCAACCATTCGATAGTCAACA
TTCAACCAATTGATAGTCAATAATCAATCAATGATTTGTCGAAAATCAAG
TACTTCTTTTCTTTAATGACCACAAAATACATACAAATCAGAAAGTTTAT
ACATCATATTTAATAAGTCATATTAATTTCGTTTTCAATCTTTTAAAATC
GTACCGTGATGGCACGTTCTGACACAATCATAATAATTAGATATTCTTGC
TGATTAATCTTTTTAACCTTCTAAAAGGAGTCAGTCATAAGGTATTTGGT
TATATTTTGTAACATTGATCGGTTTcatttctcttttcttgttaaagGAA
ACATACATAAAGGTTAAATATTAGGAATTGATAGATCATGTCAACCAAAC
GTAGAGGAAGCAATGGGCTTGATTGGAATAAAACTGTAAGTCCATAATTA
TATTGAACTTTaactaaattatttttgtttcatcAGAAATTTCAGGCTGA
TTTTGGATTCTTACAAGATTGTTAGAGTATTTTTTATGGTTCTATTACTG
TTTTCCTATTTCACTGCCTTGAATTGCAGTGTtgtgttttaaataattta
aaatagaaTCTCAGCAAATATATTTCATGCCAATTAACGAATTTGGATTG
TATTTACTGGACAGCGGCCGATTTTTTAGGGACGCTGAAAGACGGGGCAC
CAAAAGGCGTctgtgatttctaattttggcgccccttatCTTAAAATTAG
CAGTTTTCACTggttttcagccaaaaagaaggaaaatatccaaaaattgt
aGTGTTTTGGCCATTTTATTCTTTTCAGGTAAAATTGATTGAATCCAAAA
AGGATCGTAATCGCAGAAACCGAGATTACATAGAACAAGTAAAAACGAAG
GTAAAAATGACGACAGCTTCAGTGACTCACTACTCAGAAGTTTTTTAGAA
GGCATAGtttcatttattttaaaaatttgtgttACTTACCGAATTTTCTT
ACTCAGAAAAAAAGTACTCGTGTGGTTGTGGAGAAATTTTCCTAACCTTC
TTTGATTTAAATTTATGTTAACTATTTTCGTCAGGCTCATGAATGGAATG
TTTATTGCAAAACTACAGTTGGATTTGTTGCAATTTATGAGGAAAAAATA
CATTATAGTGGTAGGATTCAAACTCTTAACTTTTTACCGACTTGCTTAAA
TGGTTTGTGGACCGTGTCGTAAAATATTGCCTTTGTCAATCATCCGGCGT
TTCATAAAAGAAAACAGCAAAATTGTTCTACAACTTAAAGTTAAAACCTG
ACGGCAGATTGGGGGGGGGCAGACGTCACCTCCTCTCGTTACATTAGCAT
TATCAAAATATGATTATAATTGTTTTATTTGAGCCAAGAatccatttttc
atttcaaaggtAATAATCAGTCAATGGTAAATTTTCTAAATGACGAACGA
GTGCTGACGATTCTAAAGGAATATTGTACATTCACAGGTATTGTATTTGA
TCACTCTTGGTTATTTTTCTTTCCATTGAATTCTGGTGCTTTTTTACCTT
TTCTATATTTAGAAGAAGAGTTATGAAAATGGCTTATGAGGATTGCTATG
CATGGTAGAATTCTGACCgcttttgaaaatattggctGGAAAAGGATTCT
GACCGCTTTATTTGGGAAACTCTGCATATGTAAAATTCTTTATTgccatt
ttatattttctttaaaattttggcaaaataaaaagttttttcatagcAAA
ATAGTAATCATCAAATTCAGGATAGGAGAAAAGAAACGACTCCCTTGTAA
TATTACAATATTTCTACTAAACAGATAAGTTGGAAGTGAAGaaagtttca
agaaaaacaaatatttgtGGTATGAGTGGTTTTCTCTTTAAAATCTTTAA
GCTTTCATATAATGTAATGTAATCCTTTTAGAATCCTTGAGTTAATCCAT
TTCTTGTAATAATTATATTCCAGCtactaaaaaagaaagaaaaacaaaaa
ggaaaactGGAATAAATCACCATTCGACTGAAATAAGTAAATATGATTTA
TCGCAGAAAATGTTATCAGCAATTCACTGGAATAAGAATAAATTCCTTGT
TATAGTGAcagaaattcaaaataatttctataatttGTAGAGATAATTTG
TACTTGCTCTGGAAACGTTAATAGGATGGGAAGTAGATTATCAAAGCTGG
CAAGTAACAGATTTACATTTTGTAACTTCTCGTTGACAAACTGTAATCAA
AACAATATTTGAATcctatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022983XLOC_022983Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038380-exon-sc0001839-1491911889:5938..6872TCONS_00038380-exon-sc0001839-1491911889:5938..6872Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1510915933:5938..6872TCONS_00038380-exon-sc0001839-1510915933:5938..6872Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1575043694:5938..6872TCONS_00038380-exon-sc0001839-1575043694:5938..6872Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1491911889:7266..7337TCONS_00038380-exon-sc0001839-1491911889:7266..7337Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1510915933:7266..7337TCONS_00038380-exon-sc0001839-1510915933:7266..7337Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1575043694:7266..7337TCONS_00038380-exon-sc0001839-1575043694:7266..7337Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1491911889:7522..7597TCONS_00038380-exon-sc0001839-1491911889:7522..7597Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1510915933:7522..7597TCONS_00038380-exon-sc0001839-1510915933:7522..7597Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1575043694:7522..7597TCONS_00038380-exon-sc0001839-1575043694:7522..7597Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1491911889:7847..7924TCONS_00038380-exon-sc0001839-1491911889:7847..7924Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1510915933:7847..7924TCONS_00038380-exon-sc0001839-1510915933:7847..7924Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1575043694:7847..7924TCONS_00038380-exon-sc0001839-1575043694:7847..7924Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1491911889:8262..8709TCONS_00038380-exon-sc0001839-1491911889:8262..8709Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1510915933:8262..8709TCONS_00038380-exon-sc0001839-1510915933:8262..8709Clytia hemisphaericaexon
TCONS_00038380-exon-sc0001839-1575043694:8262..8709TCONS_00038380-exon-sc0001839-1575043694:8262..8709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001839supercontigsc0001839:5938..8709 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.586243	0.346455	0.236177	0.129607	1.2479	0.544794	0.996844	1.76843	1.49536	1.08957	0.940725	1.04001	1.22823	1.30516	0.924485	0.766458	1.11635	1.29904	2.69733	1.09841	2.6219	2.47858	0.995641	1.2804	0.909251	1.35673	3.27623	3.58413	1.28142	1.37855
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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