TCONS_00038387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038387
Unique NameTCONS_00038387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038387 ID=TCONS_00038387|Name=TCONS_00038387|organism=Clytia hemisphaerica|type=transcript|length=1421bp
TGAAAATGGCTTATGAGGATTGCTATGCATGGTAGAATTCTGACCgcttt
tgaaaatattggctGGAAAAGGATTCTGACCGCTTTATTTGGGAAACTCT
GCATATGTAAAATTCTTTATTgccattttatattttctttaaaattttgg
caaaataaaaagttttttcatagcAAAATAGTAATCATCAAATTCAGGAT
AGGAGAAAAGAAACGACTCCCTTGTAATATTACAATATTTCTACTAAACA
GATAAGTTGGAAGTGAAGaaagtttcaagaaaaacaaatatttgtGACTG
CTGCAAAGACTTTTGTCTGAAACCAGTTAAACCGATATACTCCCAAACGT
TTACTTGTGACAAGTGCCTCAAGACTTTTCATAGTAAATGTGTGGAGCTT
GGGACGTCACAACCCCGATCATGTGGATGTCACTTAATCACACCTCTGAT
CGTAGAGCATAAACGGCTATCTTGGTTGGAAGATCTCGCTGAGTTTAAAA
AGAGATATTTAAGAACTCACCTTGAAAGCATAAAACACATAATATTGCAA
CGTAATGATGGATATCATGAGTCCCTGTCCTTGAGCATATTACCATTGTT
TAAACCATATATTATTGACTATGTAGAAGGTTCATTAAAGGAAGTGCTAC
CCGATGCAGATGCCAAATtaataaaagattttttccttcCAGAGCTGATG
GTTCGCACGATATCAAAAGAGTGCAATTGTCCGGTGTTGGCTATTCGAAG
GCTGCTACTGGAGAAGAATTCTGAGACTtgatacactctttttttataag
aataatataGATTTAGGATAAAGTATTCTAAAGAATTTGACAAAATCCAA
GGTGAACTATGCTTAACGTATTCAAAAGCTCAGGCATTTATGTTCTTGTA
GAagctattcttataaaattagcGTGTAACATGATAAAGAAATATACTGT
AGCCTATACCTTTAAGGTTATTTTTGATACTCAGTAATGCATTTGGCCCA
TTTACAATTTTACTCATTCTTGCTTCACTCAAACTGTTACTAACATCACC
AATCTGCCTGTCTTGAAAAATTAAGTCAAAGTATTATATATATTCTAAAT
GGTAACATGATTTTATAAATTTAGACTGCAACTGTCCATACGACTACGAC
TGTTCTATTGTTATATAGAGTGTTCGATTTCccgttcttttatttttcta
taatcctaaaatatagaaataattaTAATTATGACAAATAATTATTATAG
ATAATGTATATATAgatgtaaaagattttaatatGTTATATTAGATTCGT
GTTGAGTGAAGAAATGTGTGTATTTTCGCCATGTTAAACTTAAAAGTAGT
TTAAAGTATCTCTACTCTATTATTTATTGTTCCATTGACATAAATATGGA
TATTTTCGCGTTGATTGTCAG
Run BLAST on NCBI

transcript from alignment at sc0001839:8011..11644+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038387 ID=TCONS_00038387|Name=TCONS_00038387|organism=Clytia hemisphaerica|type=transcript|length=3634bp|location=Sequence derived from alignment at sc0001839:8011..11644+ (Clytia hemisphaerica)
TGAAAATGGCTTATGAGGATTGCTATGCATGGTAGAATTCTGACCgcttt
tgaaaatattggctGGAAAAGGATTCTGACCGCTTTATTTGGGAAACTCT
GCATATGTAAAATTCTTTATTgccattttatattttctttaaaattttgg
caaaataaaaagttttttcatagcAAAATAGTAATCATCAAATTCAGGAT
AGGAGAAAAGAAACGACTCCCTTGTAATATTACAATATTTCTACTAAACA
GATAAGTTGGAAGTGAAGaaagtttcaagaaaaacaaatatttgtGGTAT
GAGTGGTTTTCTCTTTAAAATCTTTAAGCTTTCATATAATGTAATGTAAT
CCTTTTAGAATCCTTGAGTTAATCCATTTCTTGTAATAATTATATTCCAG
CtactaaaaaagaaagaaaaacaaaaaggaaaactGGAATAAATCACCAT
TCGACTGAAATAAGTAAATATGATTTATCGCAGAAAATGTTATCAGCAAT
TCACTGGAATAAGAATAAATTCCTTGTTATAGTGAcagaaattcaaaata
atttctataatttGTAGAGATAATTTGTACTTGCTCTGGAAACGTTAATA
GGATGGGAAGTAGATTATCAAAGCTGGCAAGTAACAGATTTACATTTTGT
AACTTCTCGTTGACAAACTGTAATCAAAACAATATTTGAATcctatttta
gcaaaaaagagaaaagaagaaaagaaagctgaagaaaatagctttcacac
taaaacaaaacaagtaaacaaactttCACCGCACATTTCGATAATTCATT
AGGGTAAATTACCAAAAGGTTAATACGATAGATCTAACTAAAGaactttc
ttaaaaattgaaaaaatttatttcgtggTTCAATCTACGAAGTTTTTCca
tactttttgataaaaggtaTATATTTGCTTGTCACAGTTTTTCTTTGACA
CTCTATATTTTTTACTGAACAACCGATCCCTTTCCGATAAGATATCCCTC
GTCCGTTATATTTGTTGATTGTTTGTTTTAGACTGCTGCAAAGACTTTTG
TCTGAAACCAGTTAAACCGATATACTCCCAAACGTTTACTTGTGACAAGT
GCCTCAAGACTTTTCATAGTAAATGTGTGGAGCTTGGGACGTCACAACCC
CGATCATGTGGATGTCACTTAATCACACCTCTGATCGTAGAGCATAAACG
GTAATTGTGTACCTCTGAGGCTTTTAAAAAGAAAAGGTTCCTGAGACttt
aattataattttaatttcataTACGTGTTTATTTATGGTCAATCTTATAA
ATTTGACAACGGGATATCTCCTCTCATAGTAAGGGCTATCATTAGACTGA
GAGGGAAAGATTTCCTAAGGTCTCATCTCACAGCTGCATTTCctgaaaaa
gattttacaagAGCGATAAGggtaaatttgtaaaaattttctgCAAGGAA
ACTCAAATCAAGTCTCTGGTGTGACTATACCATCGCGtttttttctgata
aaaaagCCCTGGTACCGAAAGGTGGAGGGGGGTTTACAAGGggttaaatg
aaaatctctctCAAAGTAGAAGAGGATAATTTTTATTGGATCGCCCTAAA
GCTGGGAGACTATTaagaatgaaaaattgaaaagtcatcattttaaaaag
ctaaaatttaaattttatttgctgcAGTTGTATAACGAAAGTTTTGTGTT
GATTTCAAACAGGCTATCTTGGTTGGAAGATCTCGCTGAGTTTAAAAAGA
GATATTTAAGAACTCACCTTGAAAGCATAAAACACATAGTAagttactaa
agtctgtctcaatataaatatataaattgaATATTGTACTTCTAGGAAAG
AAATGAGAATTATCATTGTTGTTGCTTTAGATATCTGGCTGGTTGACTTT
CGTTTTTCTGAGTCAACCAGTGATCAACTGTGAGCTGTATTATTTTTGAC
TGaataagtttttttgaaaatggtgtTAGTGATAATggtcaaagtttgaa
aattcataaaaatggtGATAATAGCACAATAGTAGAAGATTTCAAACAAA
TTTCACTTGATAATATTCTACTCGCAAATACCTTTTTAACGGTCAAAAAA
TCGCATTCTCATTCAAACAAATTCAATAGTTACAGCCATTCTTATATCTG
GAAAGACTTTAGTAAAAGTATGTTTTGAATCCATTTCTAGATATTGCAAC
GTAATGATGGATATCATGAGTCCCTGTCCTTGAGCATATTACCATTGTTT
AAACCATATATTGTAAGTATCAGGAAAAGACTATTTAATGCTTTTTTGCT
TCTTGACAAACTGTTCCAAGGCACATCGAATGTTTTGGAAAGATTTCGAA
TAAAATAGACAGAATAGTTACATTCAATTTTCTATAATCTACATAACTGT
TTTTCTTTACTTCAGGGTTTTTAATCCTGCTAAAAGTTCTGAGAAACCCT
GAAATATTTCGATTATGTTTAATCACATCCACTTTGCTtgatttatttct
aaattttcgtatttttaaCTCGATTTCGAACTCTTGGAACCTTTATCATA
GCTGTGTATCTTTGTATTTTCAGATTGACTATGTAGAAGGTTCATTAAAG
GAAGTGCTACCCGATGCAGATGCCAAATtaataaaagattttttccttcC
AGAGGTAAAGCAATACTTCAAGTTTTTCTTCACCTTTTATTTAAAACTTA
CAAGAAATAGTttgggtctgaaaactttttgtagaaataatgAGGAAATT
GTAAATTAATCTAGACAATTTTCGAGACAACtccaaagattttttaaatt
gtcgatTTTACCTAAAGAAAATTCCAGTAAATTCTTcgggaaaaaatgtt
ttgaaataccCTACAACAGTTTACCACTCCACTGAGACTTATGCTTTTTA
CATTTAGCTGATGGTTCGCACGATATCAAAAGAGTGCAATTGTCCGGTGT
TGGCTATTCGAAGGCTGCTACTGGAGAAGAATTCTGAGACTtgatacact
ctttttttataagaataatataGATTTAGGATAAAGTATTCTAAAGAATT
TGACAAAATCCAAGGTGAACTATGCTTAACGTATTCAAAAGCTCAGGCAT
TTATGTTCTTGTAGAagctattcttataaaattagcGTGTAACATGATAA
AGAAATATACTGTAGCCTATACCTTTAAGGTTATTTTTGATACTCAGTAA
TGCATTTGGCCCATTTACAATTTTACTCATTCTTGCTTCACTCAAACTGT
TACTAACATCACCAATCTGCCTGTCTTGAAAAATTAAGTCAAAGTATTAT
ATATATTCTAAATGGTAACATGATTTTATAAATTTAGACTGCAACTGTCC
ATACGACTACGACTGTTCTATTGTTATATAGAGTGTTCGATTTCccgttc
ttttatttttctataatcctaaaatatagaaataattaTAATTATGACAA
ATAATTATTATAGATAATGTATATATAgatgtaaaagattttaatatGTT
ATATTAGATTCGTGTTGAGTGAAGAAATGTGTGTATTTTCGCCATGTTAA
ACTTAAAAGTAGTTTAAAGTATCTCTACTCTATTATTTATTGTTCCATTG
ACATAAATATGGATATTTTCGCGTTGATTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022983XLOC_022983Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038387-exon-sc0001839-1491911889:8011..8306TCONS_00038387-exon-sc0001839-1491911889:8011..8306Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1510915933:8011..8306TCONS_00038387-exon-sc0001839-1510915933:8011..8306Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1575043694:8011..8306TCONS_00038387-exon-sc0001839-1575043694:8011..8306Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1491911889:9042..9210TCONS_00038387-exon-sc0001839-1491911889:9042..9210Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1510915933:9042..9210TCONS_00038387-exon-sc0001839-1510915933:9042..9210Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1575043694:9042..9210TCONS_00038387-exon-sc0001839-1575043694:9042..9210Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1491911889:9723..9798TCONS_00038387-exon-sc0001839-1491911889:9723..9798Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1510915933:9723..9798TCONS_00038387-exon-sc0001839-1510915933:9723..9798Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1575043694:9723..9798TCONS_00038387-exon-sc0001839-1575043694:9723..9798Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1491911889:10201..10272TCONS_00038387-exon-sc0001839-1491911889:10201..10272Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1510915933:10201..10272TCONS_00038387-exon-sc0001839-1510915933:10201..10272Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1575043694:10201..10272TCONS_00038387-exon-sc0001839-1575043694:10201..10272Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1491911889:10584..10664TCONS_00038387-exon-sc0001839-1491911889:10584..10664Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1510915933:10584..10664TCONS_00038387-exon-sc0001839-1510915933:10584..10664Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1575043694:10584..10664TCONS_00038387-exon-sc0001839-1575043694:10584..10664Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1491911889:10918..11644TCONS_00038387-exon-sc0001839-1491911889:10918..11644Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1510915933:10918..11644TCONS_00038387-exon-sc0001839-1510915933:10918..11644Clytia hemisphaericaexon
TCONS_00038387-exon-sc0001839-1575043694:10918..11644TCONS_00038387-exon-sc0001839-1575043694:10918..11644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001839supercontigsc0001839:8011..11644 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0196526	0.205595	0.0734483	0.23637	0.196492	0.367434	0.901916	2.90269	2.93002	0.363268	1.47586	3.39255	0.794178	0.686747	0	0	0	0	0	0	5.36802e-06	0	0	0	0.98366	2.06158	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top