XLOC_021705 (gene) - C. hemisphaerica

Overview
NameXLOC_021705
Unique NameXLOC_021705
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001508:7737..17869+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_021705 ID=XLOC_021705|Name=XLOC_021705|organism=Clytia hemisphaerica|type=gene|length=10133bp|location=Sequence derived from alignment at sc0001508:7737..17869+ (Clytia hemisphaerica)
atcttatcttactattaaatcaaatataaaaagcaaaagacttgtaaaca
taaatattaaaacaagtaaaatttagttttcatttatatCAGTACtcgta
tattttttttattgacttctctctacggggacgggagaacaatgtttttg
tttttgtttatcttgggacctgaagtgttaggggacctagcacaatgcaa
ttttttggggggagctaaattgttggggggtgttggggggaccttacttt
gttggggggagctagaaacctggctgaagctatgccTCTTTGCAGTGCTT
TAGAAATATAGATGGGAAgcttgtatacttttttttggtgcacccggtat
atatatataatataataaaatggaaaataattGCCCCATGACAAGTGACT
CACGCAATATGATTTAATGTTTTTGTATTAGTATAATGgattagttttta
ttttattatagcCAAGATCTCGTTCAAGATCACCCAAATCAAGGTCAAGA
TCTAGATCAAGGTCACGCTCAAGGTCAAGATCTCCAAAGAGACGCTCTTA
CAGTAAATCAAGGTCTCGTTCTCGTTCTCGTTCAAGAAGTGCACCAAGGA
GAAGATCATATTCTAGATCAAGATCCAGAAGTCGATCCAGATCACTAAGA
AGGAGAAGATATAGCAGGTTAAATTTTGGATTTGCTTTATActgaacatt
taaaaaaaaattattttgtgtgcttaataaaatttaaaggATGCAAGGTT
TTTTGACAGTTCCTGTTTATAAAATATGTGAAAACCTTTTATTTTCAGGG
TTCTTTATTCTGCCAAAACTAATTCCAAGTACATAAACtgtgtttttgga
cctaccccggtggaggtcctataaattaatctttgtccgttcgttcgttc
gttattagctttcctcgtgattggctcattatttttttcagattttttgc
acaaagatgcataactataaacccttgaatgtgatggagccaatttttga
agaaaaaaattttttgggcaaatctgtgccaaaaaacagcttaaaaaaag
ggttttttggactttgtgaaaaattagatcattaattttttctgattttt
tgcatgaaagtagggtaccatcataggtaaaatatggcttaagcagattt
ttgcaaaaaaattttgttggctNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNAAAATCAAAATAGATGCAATCGACAACTTGGCCTTCTGCCATCGTTT
CACAACATTGGTCAATGTAATAAAGAAGTTGAGTGACTGTTGATTGCTTA
CCAATAAAACCGTACTGTTTTtcagataaaagattttcttccatAAGATG
ATCCATGATTACTTTTCGTAACACCGACTCCATCATTTTGCATACTACAG
TATAGACAGTATAGATTACTGTATAGATGTTAAACTGACTGGACGGTAGT
TTATGGCTAGGTTGTGAGCACCCTTGTTCTTGTAGATTGGCGTGACATGC
ATTcatgtttagacatgaaattttggttgcttggcgcgTTTTTATAGAAA
AACTGGCCAAATtcaatatttttttataagcacattatcaattacttagg
tattagcttttcttgagattggctctttcattctttatgattttttgtac
aaagatgcataactataatccctcgaatgtgacggagcctggtttttgaa
agaaaaaaaaattgggagcaaatttgggccaaaaaacagctaaaaacagg
ttttttggactttgtgaaaaattgaaaaaacgtttttttataagaaacaa
acgactacacgctttttttaaataagaatacactgtataagaatgtccat
gatgaaaatgaccaaaaaactaagaatatgctaagaatatcaccttCATG
GAATTTTGttactaaagctaagaatgtcattttaagagcattttcaatta
taaattatcaattatccccaagttaggctcactccttttacaaaagtgcc
attttatgcttgagaggTATGTACTAAATGTTAAATCTAGTATGAATTAG
GATCCTAACCtaagaatgtgctgtaagaatattttaggatgattttccca
aaaaaagttaagaatatccatgatgaaatggatttacaccattcttataa
aaaaaagcgtgtaattttaatagatcgtcactatttgtgttctgaataat
tgtttaatggtcacgctcacgtaaatatcaattatatatgtcttaaatgc
ataactaggtaggtccataaaagtatcacttgttgatTTCACATTTATCA
GCATTAATTACCTTCATCTTAGGTCTAGAAGTAGAAGTAGAAGCAGAAGT
AGGTCTCCAATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGTAAGTCT
TTTTTAACAGTGAAtacctttaagggaagaaattccCACTGAATTTGATC
TTGCGTTTTTTTCCTTGAATTGCGTTTTTGGTCAAATATTACTCTCAATC
AAGACACAAGCCACCTTGAGTGGATAATTTTTGCGTGGATTTGTTTTTGC
GAATAGAGCTTTTAAGTTTTTCGTGTGGACTTATTTTTGCGAAATGGGGC
TTCAATTAGGTTTACTGATTTCAATATCGGTGAAGCTTAAGTTGCTAGCT
ATAGATTATTTACTAAGGAACCTGACATAACCAGTCTAGTGAAATTTTTC
TTTAGGAAGCACCACCAACTGGAAAATGTTTGGGTGTATTTGGTCTCAGT
TTGTACACAACAGAACGTGAAGTTAAAGATATGTTTGAGAAATATGGAAG
GGTTGCAGATTGTCGTATTGTTCATGATCATGCTGTAAGTATACAATAAA
CTTGGCAGAACTTGTAAGTAGAGGTTGAGAATTTCACACTGGGTGGTAAA
TATCCAGAAATATGTCTGTCATTTGAAAATTCACCGAATGTGGATCACTC
AAGTCAAAAGAGCAACCACTGTTATAGGGGNNNNNNNNNNNNNNNNNNNN
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ATaactaggtaggtccataaaagtatcacttgttgatTTCACATTTATCA
GCATTAATTACCTTCATCTTAGGTCTAGAAGTAGAAGTAGAAGCAGAAGT
AGGTCTCCAATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGTAAGTCT
TTTTTAACAGTGAAtacctttaagggaagaaattccCACTGAATTTGATC
TTGCGTTTTTTTCCTTGAATTGCGTTTTTGGTCAAATATTACTCAATCAA
GACACAAGCCACCTTGAGTGGATAATTTTTGCGTGGATTTGTTTTTGCGA
ATAGAGCTTTTAAGTTTTTCGTGTGGACTTATTTTTGCGAAATGGGGCTT
CAATTAGGTTTACTGATTTCAATATCGGTGAAGCTTAAGTTGCTAGCTAT
AGATTATTTACTAAGGAACCTGACATAACCAGTCTAGTGAAATTTTTCTT
TAGGAAGCACCACCAACTGGAAAATGTTTGGGTGTATTTGGTCTCAGTTT
GTACACAACAGAACGTGAAGTTAAAGATATGTTTGAGAAATATGGAAGGG
TTGCAGATTGTCGTATTGTTCATGATCATGCTGTAAGTATACAATAAACT
TGGCAGAACTTGTAAGTAGAGGTTGAGAATTTCACACTGGGTGGTAAATA
TCCAGAAATATGTCTGTCATTTGAAAATTCACCGAATGTGGATCACTCAA
GTCAAAAGAGCAACCACTGTTATAGGGGGCACAGCAAATTGGGGCTGTTA
TTTTTAAGGGATACAGTCTTATTTCACCTTTGTAAATAAATCTTTGATTA
TACTTTTTCTATTTATCAATTTTGACAtttaaaaggaagaaattttggcg
ggaatttaatttgggggatggccaaaaaagttttttcagagggaatttaa
tttggcggttggacgaaaaaactaaatttggcgggaatttaatttggcgg
tcgcttaaaaaaattaaccttaagatggcgtcaaaacagtgaaaaaatag
caaaaacaccttaaaagagatcatattttcaaaatgtttaatttggcggg
aatttaatttggcggatggcggaaaaaagaaattttggcgggaacttaat
ttagcggatttcagccaaatccgccaaattttctttccgccaaaatttct
tcctttaaggtagtgtGGGCCAACACTGGAGCTTCCACTTTGTTACAAAC
CTTGATAATGACTACCCCTGCCTGTATTTATATTACAGTGAAATAAATTG
AATCACAATAAGTGctcaagaaaattcgaaaaaattcaagcgaaatatca
agaaataaagaactatCTGACAATTGCCACATGGTGTTTCGAACAGCTCT
TCCACTTTTATTTTAGACTGGACGATCTCGTGGATTTGCATTTATCAATA
TGGAATCTATAAACGGTGCTGCAGATGTAAGGAACTTTTCTTTATTAGAA
CAAAAGCCAAACACCAACAAGGGCCGGTTATTTTTAACTGAGATTTTAAT
AGACTGATAGACACATGGTTGATGACAAAAAGTATAAatttaaagtttct
tttgcaCGGGAAACCTGACAAAACTGCATTTGTTTTTCATTACAGGCCAA
AGAACGTTTAAATGGTGCAGAACTTGATGGACGACGTATTCGTGTAGATT
ACTCAATCACGCAACGTGCACACACTCCAACTCCTGGTGTTTACATGGGA
CGACCAACAAAGTAAAAAGCAATCACTTTCTTTTCTTCTGTAGCATTTAC
AGTGTCATACTTATCGGGGTGGGGGGGGGAGGGGCAGGTAGTCCCAATGA
AATAAGATATGGCGAAAAGACCATATTCATTTCCCTAATGAATTCTTGAA
TTGATAACAGACAATCCTTACAGCTACTAGAAGAACtaacatgctcattt
ttttcTGCTTTTAGACGAAGTAGTTATCGTGGCGGCGGTGGTGGNNNNNN
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tatctgggggtgtttttttcattttttgaaaattttgttttttggggcct
ggggacgagtttcagccaaaacggacaaagtatatttgctacctatttga
aatgttacaattgggccttctaataacgggaaaatctgaagttgagccca
gtgcggtgcgcacgttcgactatttccCTAATGAATTCTTGAATTGATAA
CAGACCATCCTTACAGCTACTAGAAAAACtaacatgctcatttttttcTG
CTTTTAGACGAAGTAGTTATCGTggcggtggtggtggtggtggtagtGGG
CGTTACAGTGGTGGCGCTGGCGGAGGCAGATCCAGCAGGCGTTCGTACTC
TAGATCAAGATCCAGATCCAGATCCAGATCACCTTACTGTACGTATTCTG
AGCATCTTAGAATGTTCATTAAATCCGAGATAATTATTTTAGTTTTGCAC
AGTTTTCCTCAAAATCTCCACTGGATGTCTTTTAGGTTTTATTTTAATAA
GGTTAGCTTGTCACCAAAAAGATTTACCACCTCAGAAAAAAATTGGGATC
AATATTAGAAAAGgaaactattttattttttatacgtTTGACTTTCTTTT
ACAGATCGCTAGTCTGGCGTTTGGATTCATTGACGGTATCGAAAAACGTA
TTAAAAATGTGATCTCGTTTATTGGAAAGAAACTTGTAATCGTCGACAAC
CGGACAAGCTGCTCAACAACACGAAAGTGCCTTCGTGCAAAACCATAAAC
TCTGTTAGAGATTGTCTAGGCTATTTCGATGCCTTATAaagagtttttat
ttttatttgtagaTAACATATGATGTaagcttttttcaacttttcttttc
tAGTTTTATGGTAAGAAGAGTGAAGATTCATGTCAGAAGGTTTTGAAGAT
TGAAGTCGGAAGAGGTCGATCAAGAACGACCACTCTAACCGAACGCTTCT
TCAAGAAAATCGAAACCCTGGCAATGTAAGATACATGGCCTTTTTTAAAG
GGGGGACCTATTGAGGCGGTCTGGGTCGGCTAGGTGAGATGGGATAAATT
CTCGAACATCTATTTTCAGCCATATGATTGGTTAAAAACTGTTGTGATGC
AATCTGTACATCCCACCTAGCTGGGTTAGCCCTTCTCATAAACAACGTCC
TTAACTCTTGAGACTTACAATGttgcaaaattgattttacttGGACATTT
AAAAAGAACACCTTCATCATACAAAACATGTTTTTACATAGTTTTTTGTG
TTATCAAAATCCTATCGACTGAAAATTTATCACGTTGTTAATCGaatttt
tcaatgtttcaaCATACCATTTCTTTCAGTCGTGAAGAAAGAAGTaaaga
ataagaaaaatttattgccctgaaaatttgaagaaacaaGAAAACGAAAT
AGAAGAAAACCTTTCTGAAACGACTCTAATTCCTTGAAGAAAGAAGTTAA
AATTAGAAGAAAACCTTAGAAGATTGAAGATTTTTCGACCTTATGAAGAA
AACCGACATTTCTTAACAGGGtcatgaaaatttgaagaatgaAGAGAAGA
AATTGTGTGCTAAGTatgttatttttcaattttaattctaTCTAATTTGT
GTTTTTATCACTTTCTGATCAGTTAGTTTTTATATCTGGAACATTTCACT
TCAACGTTCTCGGCTAAACGACGATTGTTTACAACACCTACGATGATCGA
TGGACAAAAGAGGATGATTTGATGGTGCATTGGATTAACGgatcaatttt
aaaacttcagctttctttcttttttgtttttga
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00036743TCONS_00036743Clytia hemisphaericatranscript
TCONS_00036744TCONS_00036744Clytia hemisphaericatranscript
TCONS_00036745TCONS_00036745Clytia hemisphaericatranscript
TCONS_00036746TCONS_00036746Clytia hemisphaericatranscript
TCONS_00036747TCONS_00036747Clytia hemisphaericatranscript
TCONS_00036748TCONS_00036748Clytia hemisphaericatranscript
TCONS_00036749TCONS_00036749Clytia hemisphaericatranscript
TCONS_00036750TCONS_00036750Clytia hemisphaericatranscript
TCONS_00036751TCONS_00036751Clytia hemisphaericatranscript
TCONS_00036752TCONS_00036752Clytia hemisphaericatranscript
TCONS_00036753TCONS_00036753Clytia hemisphaericatranscript
TCONS_00036754TCONS_00036754Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00036753-proteinTCONS_00036753-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001508supercontigsc0001508:7737..17869 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
71.62	64.83	139.93	147.61	414.79	332.55	140.88	136.44	147.35	134.68	104.62	90.78	100.14	91.23	89.87	85.27	142.81	148.8	33.47	56.41	87.89	97.34	63.61	66.48	94.15	93.06	83.27	54.27	61.1	57.01