TCONS_00036752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036752
Unique NameTCONS_00036752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036752 ID=TCONS_00036752|Name=TCONS_00036752|organism=Clytia hemisphaerica|type=transcript|length=616bp
tagcCAAGATCTCGTTCAAGATCACCCAAATCAAGGTCAAGATCTAGATC
AAGGTCACGCTCAAGGTCAAGATCTCCAAAGAGACGCTCTTACAGTAAAT
CAAGGTCTCGTTCTCGTTCTCGTTCAAGAAGTGCACCAAGGAGAAGATCA
TATTCTAGATCAAGATCCAGAAGTCGATCCAGATCACTAAGAAGGAGAAG
ATATAGCAGGTCTAGAAGTAGAAGTAGAAGCAGAAGTAGGTCTCCAATGT
CATCTAGAAAAAGACATGTAGGAAGTAGGGAAGCACCACCAACTGGAAAA
TGTTTGGGTGTATTTGGTCTCAGTTTGTACACAACAGAACGTGAAGTTAA
AGATATGTTTGAGAAATATGGAAGGGTTGCAGATTGTCGTATTGTTCATG
ATCATGCTACTGGACGATCTCGTGGATTTGCATTTATCAATATGGAATCT
ATAAACGGTGCTGCAGATGCCAAAGAACGTTTAAATGGTGCAGAACTTGA
TGGACGACGTATTCGTGTAGATTACTCAATCACGCAACGTGCACACACTC
CAACTCCTGGTGTTTACATGGGACGACCAACAAAACGAAGTAGTTATCGT
GGCGGCGGTGGTGGNN
Run BLAST on NCBI

transcript from alignment at sc0001508:8195..14982+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036752 ID=TCONS_00036752|Name=TCONS_00036752|organism=Clytia hemisphaerica|type=transcript|length=6788bp|location=Sequence derived from alignment at sc0001508:8195..14982+ (Clytia hemisphaerica)
tagcCAAGATCTCGTTCAAGATCACCCAAATCAAGGTCAAGATCTAGATC
AAGGTCACGCTCAAGGTCAAGATCTCCAAAGAGACGCTCTTACAGTAAAT
CAAGGTCTCGTTCTCGTTCTCGTTCAAGAAGTGCACCAAGGAGAAGATCA
TATTCTAGATCAAGATCCAGAAGTCGATCCAGATCACTAAGAAGGAGAAG
ATATAGCAGGTTAAATTTTGGATTTGCTTTATActgaacatttaaaaaaa
aattattttgtgtgcttaataaaatttaaaggATGCAAGGTTTTTTGACA
GTTCCTGTTTATAAAATATGTGAAAACCTTTTATTTTCAGGGTTCTTTAT
TCTGCCAAAACTAATTCCAAGTACATAAACtgtgtttttggacctacccc
ggtggaggtcctataaattaatctttgtccgttcgttcgttcgttattag
ctttcctcgtgattggctcattatttttttcagattttttgcacaaagat
gcataactataaacccttgaatgtgatggagccaatttttgaagaaaaaa
attttttgggcaaatctgtgccaaaaaacagcttaaaaaaagggtttttt
ggactttgtgaaaaattagatcattaattttttctgattttttgcatgaa
agtagggtaccatcataggtaaaatatggcttaagcagatttttgcaaaa
aaattttgttggctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAT
CAAAATAGATGCAATCGACAACTTGGCCTTCTGCCATCGTTTCACAACAT
TGGTCAATGTAATAAAGAAGTTGAGTGACTGTTGATTGCTTACCAATAAA
ACCGTACTGTTTTtcagataaaagattttcttccatAAGATGATCCATGA
TTACTTTTCGTAACACCGACTCCATCATTTTGCATACTACAGTATAGACA
GTATAGATTACTGTATAGATGTTAAACTGACTGGACGGTAGTTTATGGCT
AGGTTGTGAGCACCCTTGTTCTTGTAGATTGGCGTGACATGCATTcatgt
ttagacatgaaattttggttgcttggcgcgTTTTTATAGAAAAACTGGCC
AAATtcaatatttttttataagcacattatcaattacttaggtattagct
tttcttgagattggctctttcattctttatgattttttgtacaaagatgc
ataactataatccctcgaatgtgacggagcctggtttttgaaagaaaaaa
aaattgggagcaaatttgggccaaaaaacagctaaaaacaggttttttgg
actttgtgaaaaattgaaaaaacgtttttttataagaaacaaacgactac
acgctttttttaaataagaatacactgtataagaatgtccatgatgaaaa
tgaccaaaaaactaagaatatgctaagaatatcaccttCATGGAATTTTG
ttactaaagctaagaatgtcattttaagagcattttcaattataaattat
caattatccccaagttaggctcactccttttacaaaagtgccattttatg
cttgagaggTATGTACTAAATGTTAAATCTAGTATGAATTAGGATCCTAA
CCtaagaatgtgctgtaagaatattttaggatgattttcccaaaaaaagt
taagaatatccatgatgaaatggatttacaccattcttataaaaaaaagc
gtgtaattttaatagatcgtcactatttgtgttctgaataattgtttaat
ggtcacgctcacgtaaatatcaattatatatgtcttaaatgcataactag
gtaggtccataaaagtatcacttgttgatTTCACATTTATCAGCATTAAT
TACCTTCATCTTAGGTCTAGAAGTAGAAGTAGAAGCAGAAGTAGGTCTCC
AATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGTAAGTCTTTTTTAAC
AGTGAAtacctttaagggaagaaattccCACTGAATTTGATCTTGCGTTT
TTTTCCTTGAATTGCGTTTTTGGTCAAATATTACTCTCAATCAAGACACA
AGCCACCTTGAGTGGATAATTTTTGCGTGGATTTGTTTTTGCGAATAGAG
CTTTTAAGTTTTTCGTGTGGACTTATTTTTGCGAAATGGGGCTTCAATTA
GGTTTACTGATTTCAATATCGGTGAAGCTTAAGTTGCTAGCTATAGATTA
TTTACTAAGGAACCTGACATAACCAGTCTAGTGAAATTTTTCTTTAGGAA
GCACCACCAACTGGAAAATGTTTGGGTGTATTTGGTCTCAGTTTGTACAC
AACAGAACGTGAAGTTAAAGATATGTTTGAGAAATATGGAAGGGTTGCAG
ATTGTCGTATTGTTCATGATCATGCTGTAAGTATACAATAAACTTGGCAG
AACTTGTAAGTAGAGGTTGAGAATTTCACACTGGGTGGTAAATATCCAGA
AATATGTCTGTCATTTGAAAATTCACCGAATGTGGATCACTCAAGTCAAA
AGAGCAACCACTGTTATAGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATGCATaactag
gtaggtccataaaagtatcacttgttgatTTCACATTTATCAGCATTAAT
TACCTTCATCTTAGGTCTAGAAGTAGAAGTAGAAGCAGAAGTAGGTCTCC
AATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGTAAGTCTTTTTTAAC
AGTGAAtacctttaagggaagaaattccCACTGAATTTGATCTTGCGTTT
TTTTCCTTGAATTGCGTTTTTGGTCAAATATTACTCAATCAAGACACAAG
CCACCTTGAGTGGATAATTTTTGCGTGGATTTGTTTTTGCGAATAGAGCT
TTTAAGTTTTTCGTGTGGACTTATTTTTGCGAAATGGGGCTTCAATTAGG
TTTACTGATTTCAATATCGGTGAAGCTTAAGTTGCTAGCTATAGATTATT
TACTAAGGAACCTGACATAACCAGTCTAGTGAAATTTTTCTTTAGGAAGC
ACCACCAACTGGAAAATGTTTGGGTGTATTTGGTCTCAGTTTGTACACAA
CAGAACGTGAAGTTAAAGATATGTTTGAGAAATATGGAAGGGTTGCAGAT
TGTCGTATTGTTCATGATCATGCTGTAAGTATACAATAAACTTGGCAGAA
CTTGTAAGTAGAGGTTGAGAATTTCACACTGGGTGGTAAATATCCAGAAA
TATGTCTGTCATTTGAAAATTCACCGAATGTGGATCACTCAAGTCAAAAG
AGCAACCACTGTTATAGGGGGCACAGCAAATTGGGGCTGTTATTTTTAAG
GGATACAGTCTTATTTCACCTTTGTAAATAAATCTTTGATTATACTTTTT
CTATTTATCAATTTTGACAtttaaaaggaagaaattttggcgggaattta
atttgggggatggccaaaaaagttttttcagagggaatttaatttggcgg
ttggacgaaaaaactaaatttggcgggaatttaatttggcggtcgcttaa
aaaaattaaccttaagatggcgtcaaaacagtgaaaaaatagcaaaaaca
ccttaaaagagatcatattttcaaaatgtttaatttggcgggaatttaat
ttggcggatggcggaaaaaagaaattttggcgggaacttaatttagcgga
tttcagccaaatccgccaaattttctttccgccaaaatttcttcctttaa
ggtagtgtGGGCCAACACTGGAGCTTCCACTTTGTTACAAACCTTGATAA
TGACTACCCCTGCCTGTATTTATATTACAGTGAAATAAATTGAATCACAA
TAAGTGctcaagaaaattcgaaaaaattcaagcgaaatatcaagaaataa
agaactatCTGACAATTGCCACATGGTGTTTCGAACAGCTCTTCCACTTT
TATTTTAGACTGGACGATCTCGTGGATTTGCATTTATCAATATGGAATCT
ATAAACGGTGCTGCAGATGTAAGGAACTTTTCTTTATTAGAACAAAAGCC
AAACACCAACAAGGGCCGGTTATTTTTAACTGAGATTTTAATAGACTGAT
AGACACATGGTTGATGACAAAAAGTATAAatttaaagtttcttttgcaCG
GGAAACCTGACAAAACTGCATTTGTTTTTCATTACAGGCCAAAGAACGTT
TAAATGGTGCAGAACTTGATGGACGACGTATTCGTGTAGATTACTCAATC
ACGCAACGTGCACACACTCCAACTCCTGGTGTTTACATGGGACGACCAAC
AAAGTAAAAAGCAATCACTTTCTTTTCTTCTGTAGCATTTACAGTGTCAT
ACTTATCGGGGTGGGGGGGGGAGGGGCAGGTAGTCCCAATGAAATAAGAT
ATGGCGAAAAGACCATATTCATTTCCCTAATGAATTCTTGAATTGATAAC
AGACAATCCTTACAGCTACTAGAAGAACtaacatgctcatttttttcTGC
TTTTAGACGAAGTAGTTATCGTGGCGGCGGTGGTGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021705XLOC_021705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036752-exon-sc0001508-1491911889:8195..8403TCONS_00036752-exon-sc0001508-1491911889:8195..8403Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1510915933:8195..8403TCONS_00036752-exon-sc0001508-1510915933:8195..8403Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1575043694:8195..8403TCONS_00036752-exon-sc0001508-1575043694:8195..8403Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1491911889:11159..11228TCONS_00036752-exon-sc0001508-1491911889:11159..11228Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1510915933:11159..11228TCONS_00036752-exon-sc0001508-1510915933:11159..11228Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1575043694:11159..11228TCONS_00036752-exon-sc0001508-1575043694:11159..11228Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1491911889:13490..13618TCONS_00036752-exon-sc0001508-1491911889:13490..13618Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1510915933:13490..13618TCONS_00036752-exon-sc0001508-1510915933:13490..13618Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1575043694:13490..13618TCONS_00036752-exon-sc0001508-1575043694:13490..13618Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1491911889:14403..14462TCONS_00036752-exon-sc0001508-1491911889:14403..14462Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1510915933:14403..14462TCONS_00036752-exon-sc0001508-1510915933:14403..14462Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1575043694:14403..14462TCONS_00036752-exon-sc0001508-1575043694:14403..14462Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1491911889:14632..14747TCONS_00036752-exon-sc0001508-1491911889:14632..14747Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1510915933:14632..14747TCONS_00036752-exon-sc0001508-1510915933:14632..14747Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1575043694:14632..14747TCONS_00036752-exon-sc0001508-1575043694:14632..14747Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1491911889:14951..14982TCONS_00036752-exon-sc0001508-1491911889:14951..14982Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1510915933:14951..14982TCONS_00036752-exon-sc0001508-1510915933:14951..14982Clytia hemisphaericaexon
TCONS_00036752-exon-sc0001508-1575043694:14951..14982TCONS_00036752-exon-sc0001508-1575043694:14951..14982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001508supercontigsc0001508:8195..14982 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.3935	34.7511	67.7742	40.5456	54.9253	44.6319	19.6684	16.1313	43.1602	41.2174	15.432	20.7191	32.8288	37.5625	29.6682	31.9562	40.0277	50.927	5.01073	17.5199	33.8556	43.7286	19.9756	23.7798	8.97258	10.1718	29.4458	17.5516	19.0946	28.1298
Blast
[Close]
BLAST of TCONS_00036752 vs. Swiss-Prot (Human)
Match: TRA2B (Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.497e-44
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:  265 HVGSREAPPTGKCLGVFGLSLYTTEREVKDMFEKYGRVADCRIVHDHATGRSRGFAFINMESINGAADAKERLNGAELDGRRIRVDYSITQRAHTPTPGVYMGRPTKRSSYR 600
            HVG+R  P    CLGVFGLSLYTTER+++++F KYG +AD  IV+D  + RSRGFAF+  E+++ A +AKER NG ELDGRRIRVD+SIT+R HTPTPG+YMGRPT  SS R
Sbjct:  107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR 218
The following BLAST results are available for this feature:
BLAST of TCONS_00036752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRA2B1.497e-4464.29Transformer-2 protein homolog beta OS=Homo sapiens... [more]
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