TCONS_00036753-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00036753-protein
Unique NameTCONS_00036753-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length158

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00036753-protein ID=TCONS_00036753-protein|Name=TCONS_00036753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MSSRKRHVGSREAPPTGKCLGVFGLSLYTTEREVKDMFEKYGRVADCRIV
HDHATGRSRGFAFINMESINGAADAKERLNGAELDGRRIRVDYSITQRAH
TPTPGVYMGRPTKRSSYRGGGGGGGSGRYSGGAGGGRSSRRSYSRSRSRS
RSRSPYYR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021705XLOC_021705Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00036753TCONS_00036753Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 19..92
e-value: 2.8E-24
score: 96.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 22..90
e-value: 3.0E-20
score: 71.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 18..96
score: 18.052
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 12..126
NoneNo IPR availableGENE3D3.30.70.330coord: 1..156
e-value: 1.5E-28
score: 98.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..158
NoneNo IPR availableCDDcd12363RRM_TRA2coord: 19..96
e-value: 4.20305E-39
score: 128.511

Blast
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BLAST of TCONS_00036753-protein vs. Swiss-Prot (Human)
Match: TRA2B (Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.953e-50
Identity = 84/146 (57.53%), Postives = 103/146 (70.55%), Query Frame = 0 
Query:    1 MSSRKRHVGSREAPPTGKCLGVFGLSLYTTEREVKDMFEKYGRVADCRIVHDHATGRSRGFAFINMESINGAADAKERLNGAELDGRRIRVDYSITQRAHTPTPGVYMGRPTKRSSYRGGGGGGGSGRYSGGAGGGRSSRRSYSRS 146
            MS+R+RHVG+R  P    CLGVFGLSLYTTER+++++F KYG +AD  IV+D  + RSRGFAF+  E+++ A +AKER NG ELDGRRIRVD+SIT+R HTPTPG+YMGRPT  SS R          Y  G   G   R  YSRS
Sbjct:  101 MSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR-------RDYYDRGYDRGYDDRDYYSRS 239
The following BLAST results are available for this feature:
BLAST of TCONS_00036753-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRA2B1.953e-5057.53Transformer-2 protein homolog beta OS=Homo sapiens... [more]
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