TCONS_00036746 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036746
Unique NameTCONS_00036746
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036746 ID=TCONS_00036746|Name=TCONS_00036746|organism=Clytia hemisphaerica|type=transcript|length=1984bp
aatggaaaataattGCCCCATGACAAGTGACTCACGCAATATGATTTAAT
GTTTTTGTATTAGTATAATGgattagtttttattttattatagcCAAGAT
CTCGTTCAAGATCACCCAAATCAAGGTCAAGATCTAGATCAAGGTCACGC
TCAAGGTCAAGATCTCCAAAGAGACGCTCTTACAGTAAATCAAGGTCTCG
TTCTCGTTCTCGTTCAAGAAGTGCACCAAGGAGAAGATCATATTCTAGAT
CAAGATCCAGAAGTCGATCCAGATCACTAAGAAGGAGAAGATATAGCAGG
TCTAGAAGTAGAAGTAGAAGCAGAAGTAGGTCTCCAATGTCATCTAGAAA
AAGACATGTAGGAAGTAGGGAAGCACCACCAACTGGAAAATGTTTGGGTG
TATTTGGTCTCAGTTTGTACACAACAGAACGTGAAGTTAAAGATATGTTT
GAGAAATATGGAAGGGTTGCAGATTGTCGTATTGTTCATGATCATGCTAC
TGGACGATCTCGTGGATTTGCATTTATCAATATGGAATCTATAAACGGTG
CTGCAGATGCCAAAGAACGTTTAAATGGTGCAGAACTTGATGGACGACGT
ATTCGTGTAGATTACTCAATCACGCAACGTGCACACACTCCAACTCCTGG
TGTTTACATGGGACGACCAACAAAACGAAGTAGTTATCGTggcggtggtg
gtggtggtggtagtGGGCGTTACAGTGGTGGCGCTGGCGGAGGCAGATCC
AGCAGGCGTTCGTACTCTAGATCAAGATCCAGATCCAGATCCAGATCACC
TTACTATCGCTAGTCTGGCGTTTGGATTCATTGACGGTATCGAAAAACGT
ATTAAAAATGTGATCTCGTTTATTGGAAAGAAACTTGTAATCGTCGACAA
CCGGACAAGCTGCTCAACAACACGAAAGTGCCTTCGTGCAAAACCATAAA
CTCTGTTAGAGATTGTCTAGGCTATTTCGATGCCTTATAaagagttttta
tttttatttgtagaTAACATATGATGTaagcttttttcaacttttctttt
ctAGTTTTATGGTAAGAAGAGTGAAGATTCATGTCAGAAGGTTTTGAAGA
TTGAAGTCGGAAGAGGTCGATCAAGAACGACCACTCTAACCGAACGCTTC
TTCAAGAAAATCGAAACCCTGGCAATGTAAGATACATGGCCTTTTTTAAA
GGGGGGACCTATTGAGGCGGTCTGGGTCGGCTAGGTGAGATGGGATAAAT
TCTCGAACATCTATTTTCAGCCATATGATTGGTTAAAAACTGTTGTGATG
CAATCTGTACATCCCACCTAGCTGGGTTAGCCCTTCTCATAAACAACGTC
CTTAACTCTTGAGACTTACAATGttgcaaaattgattttacttGGACATT
TAAAAAGAACACCTTCATCATACAAAACATGTTTTTACATAGTTTTTTGT
GTTATCAAAATCCTATCGACTGAAAATTTATCACGTTGTTAATCGaattt
ttcaatgtttcaaCATACCATTTCTTTCAGTCGTGAAGAAAGAAGTaaag
aataagaaaaatttattgccctgaaaatttgaagaaacaaGAAAACGAAA
TAGAAGAAAACCTTTCTGAAACGACTCTAATTCCTTGAAGAAAGAAGTTA
AAATTAGAAGAAAACCTTAGAAGATTGAAGATTTTTCGACCTTATGAAGA
AAACCGACATTTCTTAACAGGGtcatgaaaatttgaagaatgaAGAGAAG
AAATTGTGTGCTAAGTatgttatttttcaattttaattctaTCTAATTTG
TGTTTTTATCACTTTCTGATCAGTTAGTTTTTATATCTGGAACATTTCAC
TTCAACGTTCTCGGCTAAACGACGATTGTTTACAACACCTACGATGATCG
ATGGACAAAAGAGGATGATTTGATGGTGCATTGGATTAACGgatcaattt
taaaacttcagctttctttcttttttgtttttga
Run BLAST on NCBI

transcript from alignment at sc0001508:8105..17869+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036746 ID=TCONS_00036746|Name=TCONS_00036746|organism=Clytia hemisphaerica|type=transcript|length=9765bp|location=Sequence derived from alignment at sc0001508:8105..17869+ (Clytia hemisphaerica)
aatggaaaataattGCCCCATGACAAGTGACTCACGCAATATGATTTAAT
GTTTTTGTATTAGTATAATGgattagtttttattttattatagcCAAGAT
CTCGTTCAAGATCACCCAAATCAAGGTCAAGATCTAGATCAAGGTCACGC
TCAAGGTCAAGATCTCCAAAGAGACGCTCTTACAGTAAATCAAGGTCTCG
TTCTCGTTCTCGTTCAAGAAGTGCACCAAGGAGAAGATCATATTCTAGAT
CAAGATCCAGAAGTCGATCCAGATCACTAAGAAGGAGAAGATATAGCAGG
TTAAATTTTGGATTTGCTTTATActgaacatttaaaaaaaaattattttg
tgtgcttaataaaatttaaaggATGCAAGGTTTTTTGACAGTTCCTGTTT
ATAAAATATGTGAAAACCTTTTATTTTCAGGGTTCTTTATTCTGCCAAAA
CTAATTCCAAGTACATAAACtgtgtttttggacctaccccggtggaggtc
ctataaattaatctttgtccgttcgttcgttcgttattagctttcctcgt
gattggctcattatttttttcagattttttgcacaaagatgcataactat
aaacccttgaatgtgatggagccaatttttgaagaaaaaaattttttggg
caaatctgtgccaaaaaacagcttaaaaaaagggttttttggactttgtg
aaaaattagatcattaattttttctgattttttgcatgaaagtagggtac
catcataggtaaaatatggcttaagcagatttttgcaaaaaaattttgtt
ggctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCAAAATAGAT
GCAATCGACAACTTGGCCTTCTGCCATCGTTTCACAACATTGGTCAATGT
AATAAAGAAGTTGAGTGACTGTTGATTGCTTACCAATAAAACCGTACTGT
TTTtcagataaaagattttcttccatAAGATGATCCATGATTACTTTTCG
TAACACCGACTCCATCATTTTGCATACTACAGTATAGACAGTATAGATTA
CTGTATAGATGTTAAACTGACTGGACGGTAGTTTATGGCTAGGTTGTGAG
CACCCTTGTTCTTGTAGATTGGCGTGACATGCATTcatgtttagacatga
aattttggttgcttggcgcgTTTTTATAGAAAAACTGGCCAAATtcaata
tttttttataagcacattatcaattacttaggtattagcttttcttgaga
ttggctctttcattctttatgattttttgtacaaagatgcataactataa
tccctcgaatgtgacggagcctggtttttgaaagaaaaaaaaattgggag
caaatttgggccaaaaaacagctaaaaacaggttttttggactttgtgaa
aaattgaaaaaacgtttttttataagaaacaaacgactacacgctttttt
taaataagaatacactgtataagaatgtccatgatgaaaatgaccaaaaa
actaagaatatgctaagaatatcaccttCATGGAATTTTGttactaaagc
taagaatgtcattttaagagcattttcaattataaattatcaattatccc
caagttaggctcactccttttacaaaagtgccattttatgcttgagaggT
ATGTACTAAATGTTAAATCTAGTATGAATTAGGATCCTAACCtaagaatg
tgctgtaagaatattttaggatgattttcccaaaaaaagttaagaatatc
catgatgaaatggatttacaccattcttataaaaaaaagcgtgtaatttt
aatagatcgtcactatttgtgttctgaataattgtttaatggtcacgctc
acgtaaatatcaattatatatgtcttaaatgcataactaggtaggtccat
aaaagtatcacttgttgatTTCACATTTATCAGCATTAATTACCTTCATC
TTAGGTCTAGAAGTAGAAGTAGAAGCAGAAGTAGGTCTCCAATGTCATCT
AGAAAAAGACATGTAGGAAGTAGGGTAAGTCTTTTTTAACAGTGAAtacc
tttaagggaagaaattccCACTGAATTTGATCTTGCGTTTTTTTCCTTGA
ATTGCGTTTTTGGTCAAATATTACTCTCAATCAAGACACAAGCCACCTTG
AGTGGATAATTTTTGCGTGGATTTGTTTTTGCGAATAGAGCTTTTAAGTT
TTTCGTGTGGACTTATTTTTGCGAAATGGGGCTTCAATTAGGTTTACTGA
TTTCAATATCGGTGAAGCTTAAGTTGCTAGCTATAGATTATTTACTAAGG
AACCTGACATAACCAGTCTAGTGAAATTTTTCTTTAGGAAGCACCACCAA
CTGGAAAATGTTTGGGTGTATTTGGTCTCAGTTTGTACACAACAGAACGT
GAAGTTAAAGATATGTTTGAGAAATATGGAAGGGTTGCAGATTGTCGTAT
TGTTCATGATCATGCTGTAAGTATACAATAAACTTGGCAGAACTTGTAAG
TAGAGGTTGAGAATTTCACACTGGGTGGTAAATATCCAGAAATATGTCTG
TCATTTGAAAATTCACCGAATGTGGATCACTCAAGTCAAAAGAGCAACCA
CTGTTATAGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNTTAAATGCATaactaggtaggtccat
aaaagtatcacttgttgatTTCACATTTATCAGCATTAATTACCTTCATC
TTAGGTCTAGAAGTAGAAGTAGAAGCAGAAGTAGGTCTCCAATGTCATCT
AGAAAAAGACATGTAGGAAGTAGGGTAAGTCTTTTTTAACAGTGAAtacc
tttaagggaagaaattccCACTGAATTTGATCTTGCGTTTTTTTCCTTGA
ATTGCGTTTTTGGTCAAATATTACTCAATCAAGACACAAGCCACCTTGAG
TGGATAATTTTTGCGTGGATTTGTTTTTGCGAATAGAGCTTTTAAGTTTT
TCGTGTGGACTTATTTTTGCGAAATGGGGCTTCAATTAGGTTTACTGATT
TCAATATCGGTGAAGCTTAAGTTGCTAGCTATAGATTATTTACTAAGGAA
CCTGACATAACCAGTCTAGTGAAATTTTTCTTTAGGAAGCACCACCAACT
GGAAAATGTTTGGGTGTATTTGGTCTCAGTTTGTACACAACAGAACGTGA
AGTTAAAGATATGTTTGAGAAATATGGAAGGGTTGCAGATTGTCGTATTG
TTCATGATCATGCTGTAAGTATACAATAAACTTGGCAGAACTTGTAAGTA
GAGGTTGAGAATTTCACACTGGGTGGTAAATATCCAGAAATATGTCTGTC
ATTTGAAAATTCACCGAATGTGGATCACTCAAGTCAAAAGAGCAACCACT
GTTATAGGGGGCACAGCAAATTGGGGCTGTTATTTTTAAGGGATACAGTC
TTATTTCACCTTTGTAAATAAATCTTTGATTATACTTTTTCTATTTATCA
ATTTTGACAtttaaaaggaagaaattttggcgggaatttaatttggggga
tggccaaaaaagttttttcagagggaatttaatttggcggttggacgaaa
aaactaaatttggcgggaatttaatttggcggtcgcttaaaaaaattaac
cttaagatggcgtcaaaacagtgaaaaaatagcaaaaacaccttaaaaga
gatcatattttcaaaatgtttaatttggcgggaatttaatttggcggatg
gcggaaaaaagaaattttggcgggaacttaatttagcggatttcagccaa
atccgccaaattttctttccgccaaaatttcttcctttaaggtagtgtGG
GCCAACACTGGAGCTTCCACTTTGTTACAAACCTTGATAATGACTACCCC
TGCCTGTATTTATATTACAGTGAAATAAATTGAATCACAATAAGTGctca
agaaaattcgaaaaaattcaagcgaaatatcaagaaataaagaactatCT
GACAATTGCCACATGGTGTTTCGAACAGCTCTTCCACTTTTATTTTAGAC
TGGACGATCTCGTGGATTTGCATTTATCAATATGGAATCTATAAACGGTG
CTGCAGATGTAAGGAACTTTTCTTTATTAGAACAAAAGCCAAACACCAAC
AAGGGCCGGTTATTTTTAACTGAGATTTTAATAGACTGATAGACACATGG
TTGATGACAAAAAGTATAAatttaaagtttcttttgcaCGGGAAACCTGA
CAAAACTGCATTTGTTTTTCATTACAGGCCAAAGAACGTTTAAATGGTGC
AGAACTTGATGGACGACGTATTCGTGTAGATTACTCAATCACGCAACGTG
CACACACTCCAACTCCTGGTGTTTACATGGGACGACCAACAAAGTAAAAA
GCAATCACTTTCTTTTCTTCTGTAGCATTTACAGTGTCATACTTATCGGG
GTGGGGGGGGGAGGGGCAGGTAGTCCCAATGAAATAAGATATGGCGAAAA
GACCATATTCATTTCCCTAATGAATTCTTGAATTGATAACAGACAATCCT
TACAGCTACTAGAAGAACtaacatgctcatttttttcTGCTTTTAGACGA
AGTAGTTATCGTGGCGGCGGTGGTGGNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNccttgggtgaatatctgggggtgtttttt
tcattttttgaaaattttgttttttggggcctggggacgagtttcagcca
aaacggacaaagtatatttgctacctatttgaaatgttacaattgggcct
tctaataacgggaaaatctgaagttgagcccagtgcggtgcgcacgttcg
actatttccCTAATGAATTCTTGAATTGATAACAGACCATCCTTACAGCT
ACTAGAAAAACtaacatgctcatttttttcTGCTTTTAGACGAAGTAGTT
ATCGTggcggtggtggtggtggtggtagtGGGCGTTACAGTGGTGGCGCT
GGCGGAGGCAGATCCAGCAGGCGTTCGTACTCTAGATCAAGATCCAGATC
CAGATCCAGATCACCTTACTGTACGTATTCTGAGCATCTTAGAATGTTCA
TTAAATCCGAGATAATTATTTTAGTTTTGCACAGTTTTCCTCAAAATCTC
CACTGGATGTCTTTTAGGTTTTATTTTAATAAGGTTAGCTTGTCACCAAA
AAGATTTACCACCTCAGAAAAAAATTGGGATCAATATTAGAAAAGgaaac
tattttattttttatacgtTTGACTTTCTTTTACAGATCGCTAGTCTGGC
GTTTGGATTCATTGACGGTATCGAAAAACGTATTAAAAATGTGATCTCGT
TTATTGGAAAGAAACTTGTAATCGTCGACAACCGGACAAGCTGCTCAACA
ACACGAAAGTGCCTTCGTGCAAAACCATAAACTCTGTTAGAGATTGTCTA
GGCTATTTCGATGCCTTATAaagagtttttatttttatttgtagaTAACA
TATGATGTaagcttttttcaacttttcttttctAGTTTTATGGTAAGAAG
AGTGAAGATTCATGTCAGAAGGTTTTGAAGATTGAAGTCGGAAGAGGTCG
ATCAAGAACGACCACTCTAACCGAACGCTTCTTCAAGAAAATCGAAACCC
TGGCAATGTAAGATACATGGCCTTTTTTAAAGGGGGGACCTATTGAGGCG
GTCTGGGTCGGCTAGGTGAGATGGGATAAATTCTCGAACATCTATTTTCA
GCCATATGATTGGTTAAAAACTGTTGTGATGCAATCTGTACATCCCACCT
AGCTGGGTTAGCCCTTCTCATAAACAACGTCCTTAACTCTTGAGACTTAC
AATGttgcaaaattgattttacttGGACATTTAAAAAGAACACCTTCATC
ATACAAAACATGTTTTTACATAGTTTTTTGTGTTATCAAAATCCTATCGA
CTGAAAATTTATCACGTTGTTAATCGaatttttcaatgtttcaaCATACC
ATTTCTTTCAGTCGTGAAGAAAGAAGTaaagaataagaaaaatttattgc
cctgaaaatttgaagaaacaaGAAAACGAAATAGAAGAAAACCTTTCTGA
AACGACTCTAATTCCTTGAAGAAAGAAGTTAAAATTAGAAGAAAACCTTA
GAAGATTGAAGATTTTTCGACCTTATGAAGAAAACCGACATTTCTTAACA
GGGtcatgaaaatttgaagaatgaAGAGAAGAAATTGTGTGCTAAGTatg
ttatttttcaattttaattctaTCTAATTTGTGTTTTTATCACTTTCTGA
TCAGTTAGTTTTTATATCTGGAACATTTCACTTCAACGTTCTCGGCTAAA
CGACGATTGTTTACAACACCTACGATGATCGATGGACAAAAGAGGATGAT
TTGATGGTGCATTGGATTAACGgatcaattttaaaacttcagctttcttt
cttttttgtttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021705XLOC_021705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036746-exon-sc0001508-1491911889:8105..8403TCONS_00036746-exon-sc0001508-1491911889:8105..8403Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1510915933:8105..8403TCONS_00036746-exon-sc0001508-1510915933:8105..8403Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1575043694:8105..8403TCONS_00036746-exon-sc0001508-1575043694:8105..8403Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1491911889:13109..13178TCONS_00036746-exon-sc0001508-1491911889:13109..13178Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1510915933:13109..13178TCONS_00036746-exon-sc0001508-1510915933:13109..13178Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1575043694:13109..13178TCONS_00036746-exon-sc0001508-1575043694:13109..13178Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1491911889:13490..13618TCONS_00036746-exon-sc0001508-1491911889:13490..13618Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1510915933:13490..13618TCONS_00036746-exon-sc0001508-1510915933:13490..13618Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1575043694:13490..13618TCONS_00036746-exon-sc0001508-1575043694:13490..13618Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1491911889:14403..14462TCONS_00036746-exon-sc0001508-1491911889:14403..14462Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1510915933:14403..14462TCONS_00036746-exon-sc0001508-1510915933:14403..14462Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1575043694:14403..14462TCONS_00036746-exon-sc0001508-1575043694:14403..14462Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1491911889:14632..14747TCONS_00036746-exon-sc0001508-1491911889:14632..14747Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1510915933:14632..14747TCONS_00036746-exon-sc0001508-1510915933:14632..14747Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1575043694:14632..14747TCONS_00036746-exon-sc0001508-1575043694:14632..14747Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1491911889:16344..16474TCONS_00036746-exon-sc0001508-1491911889:16344..16474Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1510915933:16344..16474TCONS_00036746-exon-sc0001508-1510915933:16344..16474Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1575043694:16344..16474TCONS_00036746-exon-sc0001508-1575043694:16344..16474Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1491911889:16691..17869TCONS_00036746-exon-sc0001508-1491911889:16691..17869Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1510915933:16691..17869TCONS_00036746-exon-sc0001508-1510915933:16691..17869Clytia hemisphaericaexon
TCONS_00036746-exon-sc0001508-1575043694:16691..17869TCONS_00036746-exon-sc0001508-1575043694:16691..17869Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001508supercontigsc0001508:8105..17869 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00091	0.70098	1.75576	2.06954	19.6498	22.9868	9.69514	8.46978	7.42715	7.03197	1.65431	2.54358	4.1862	5.24282	3.32363	2.81199	6.41831	5.36231	0.321843	2.29475	6.32842	8.34393	2.69464	2.42137	3.81897	3.53873	7.54119	5.29293	4.0913	3.40063
Blast
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BLAST of TCONS_00036746 vs. Swiss-Prot (Human)
Match: TRA2B (Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.098e-40
Identity = 69/106 (65.09%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:  355 HVGSREAPPTGKCLGVFGLSLYTTEREVKDMFEKYGRVADCRIVHDHATGRSRGFAFINMESINGAADAKERLNGAELDGRRIRVDYSITQRAHTPTPGVYMGRPT 672
            HVG+R  P    CLGVFGLSLYTTER+++++F KYG +AD  IV+D  + RSRGFAF+  E+++ A +AKER NG ELDGRRIRVD+SIT+R HTPTPG+YMGRPT
Sbjct:  107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPT 212
The following BLAST results are available for this feature:
BLAST of TCONS_00036746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRA2B1.098e-4065.09Transformer-2 protein homolog beta OS=Homo sapiens... [more]
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