TCONS_00036749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036749
Unique NameTCONS_00036749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036749 ID=TCONS_00036749|Name=TCONS_00036749|organism=Clytia hemisphaerica|type=transcript|length=631bp
gtttttattttattatagcCAAGATCTCGTTCAAGATCACCCAAATCAAG
GTCAAGATCTAGATCAAGGTCACGCTCAAGGTCAAGATCTCCAAAGAGAC
GCTCTTACAGTAAATCAAGGTCTCGTTCTCGTTCTCGTTCAAGAAGTGCA
CCAAGGAGAAGATCATATTCTAGATCAAGATCCAGAAGTCGATCCAGATC
ACTAAGAAGGAGAAGATATAGCAGGTCTAGAAGTAGAAGTAGAAGCAGAA
GTAGGTCTCCAATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGAAGCA
CCACCAACTGGAAAATGTTTGGGTGTATTTGGTCTCAGTTTGTACACAAC
AGAACGTGAAGTTAAAGATATGTTTGAGAAATATGGAAGGGTTGCAGATT
GTCGTATTGTTCATGATCATGCTACTGGACGATCTCGTGGATTTGCATTT
ATCAATATGGAATCTATAAACGGTGCTGCAGATGCCAAAGAACGTTTAAA
TGGTGCAGAACTTGATGGACGACGTATTCGTGTAGATTACTCAATCACGC
AACGTGCACACACTCCAACTCCTGGTGTTTACATGGGACGACCAACAAAA
CGAAGTAGTTATCGTGGCGGCGGTGGTGGNN
Run BLAST on NCBI

transcript from alignment at sc0001508:8180..14982+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036749 ID=TCONS_00036749|Name=TCONS_00036749|organism=Clytia hemisphaerica|type=transcript|length=6803bp|location=Sequence derived from alignment at sc0001508:8180..14982+ (Clytia hemisphaerica)
gtttttattttattatagcCAAGATCTCGTTCAAGATCACCCAAATCAAG
GTCAAGATCTAGATCAAGGTCACGCTCAAGGTCAAGATCTCCAAAGAGAC
GCTCTTACAGTAAATCAAGGTCTCGTTCTCGTTCTCGTTCAAGAAGTGCA
CCAAGGAGAAGATCATATTCTAGATCAAGATCCAGAAGTCGATCCAGATC
ACTAAGAAGGAGAAGATATAGCAGGTTAAATTTTGGATTTGCTTTATAct
gaacatttaaaaaaaaattattttgtgtgcttaataaaatttaaaggATG
CAAGGTTTTTTGACAGTTCCTGTTTATAAAATATGTGAAAACCTTTTATT
TTCAGGGTTCTTTATTCTGCCAAAACTAATTCCAAGTACATAAACtgtgt
ttttggacctaccccggtggaggtcctataaattaatctttgtccgttcg
ttcgttcgttattagctttcctcgtgattggctcattatttttttcagat
tttttgcacaaagatgcataactataaacccttgaatgtgatggagccaa
tttttgaagaaaaaaattttttgggcaaatctgtgccaaaaaacagctta
aaaaaagggttttttggactttgtgaaaaattagatcattaattttttct
gattttttgcatgaaagtagggtaccatcataggtaaaatatggcttaag
cagatttttgcaaaaaaattttgttggctNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNAAAATCAAAATAGATGCAATCGACAACTTGGCCTTCTGCC
ATCGTTTCACAACATTGGTCAATGTAATAAAGAAGTTGAGTGACTGTTGA
TTGCTTACCAATAAAACCGTACTGTTTTtcagataaaagattttcttcca
tAAGATGATCCATGATTACTTTTCGTAACACCGACTCCATCATTTTGCAT
ACTACAGTATAGACAGTATAGATTACTGTATAGATGTTAAACTGACTGGA
CGGTAGTTTATGGCTAGGTTGTGAGCACCCTTGTTCTTGTAGATTGGCGT
GACATGCATTcatgtttagacatgaaattttggttgcttggcgcgTTTTT
ATAGAAAAACTGGCCAAATtcaatatttttttataagcacattatcaatt
acttaggtattagcttttcttgagattggctctttcattctttatgattt
tttgtacaaagatgcataactataatccctcgaatgtgacggagcctggt
ttttgaaagaaaaaaaaattgggagcaaatttgggccaaaaaacagctaa
aaacaggttttttggactttgtgaaaaattgaaaaaacgtttttttataa
gaaacaaacgactacacgctttttttaaataagaatacactgtataagaa
tgtccatgatgaaaatgaccaaaaaactaagaatatgctaagaatatcac
cttCATGGAATTTTGttactaaagctaagaatgtcattttaagagcattt
tcaattataaattatcaattatccccaagttaggctcactccttttacaa
aagtgccattttatgcttgagaggTATGTACTAAATGTTAAATCTAGTAT
GAATTAGGATCCTAACCtaagaatgtgctgtaagaatattttaggatgat
tttcccaaaaaaagttaagaatatccatgatgaaatggatttacaccatt
cttataaaaaaaagcgtgtaattttaatagatcgtcactatttgtgttct
gaataattgtttaatggtcacgctcacgtaaatatcaattatatatgtct
taaatgcataactaggtaggtccataaaagtatcacttgttgatTTCACA
TTTATCAGCATTAATTACCTTCATCTTAGGTCTAGAAGTAGAAGTAGAAG
CAGAAGTAGGTCTCCAATGTCATCTAGAAAAAGACATGTAGGAAGTAGGG
TAAGTCTTTTTTAACAGTGAAtacctttaagggaagaaattccCACTGAA
TTTGATCTTGCGTTTTTTTCCTTGAATTGCGTTTTTGGTCAAATATTACT
CTCAATCAAGACACAAGCCACCTTGAGTGGATAATTTTTGCGTGGATTTG
TTTTTGCGAATAGAGCTTTTAAGTTTTTCGTGTGGACTTATTTTTGCGAA
ATGGGGCTTCAATTAGGTTTACTGATTTCAATATCGGTGAAGCTTAAGTT
GCTAGCTATAGATTATTTACTAAGGAACCTGACATAACCAGTCTAGTGAA
ATTTTTCTTTAGGAAGCACCACCAACTGGAAAATGTTTGGGTGTATTTGG
TCTCAGTTTGTACACAACAGAACGTGAAGTTAAAGATATGTTTGAGAAAT
ATGGAAGGGTTGCAGATTGTCGTATTGTTCATGATCATGCTGTAAGTATA
CAATAAACTTGGCAGAACTTGTAAGTAGAGGTTGAGAATTTCACACTGGG
TGGTAAATATCCAGAAATATGTCTGTCATTTGAAAATTCACCGAATGTGG
ATCACTCAAGTCAAAAGAGCAACCACTGTTATAGGGGNNNNNNNNNNNNN
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TAAATGCATaactaggtaggtccataaaagtatcacttgttgatTTCACA
TTTATCAGCATTAATTACCTTCATCTTAGGTCTAGAAGTAGAAGTAGAAG
CAGAAGTAGGTCTCCAATGTCATCTAGAAAAAGACATGTAGGAAGTAGGG
TAAGTCTTTTTTAACAGTGAAtacctttaagggaagaaattccCACTGAA
TTTGATCTTGCGTTTTTTTCCTTGAATTGCGTTTTTGGTCAAATATTACT
CAATCAAGACACAAGCCACCTTGAGTGGATAATTTTTGCGTGGATTTGTT
TTTGCGAATAGAGCTTTTAAGTTTTTCGTGTGGACTTATTTTTGCGAAAT
GGGGCTTCAATTAGGTTTACTGATTTCAATATCGGTGAAGCTTAAGTTGC
TAGCTATAGATTATTTACTAAGGAACCTGACATAACCAGTCTAGTGAAAT
TTTTCTTTAGGAAGCACCACCAACTGGAAAATGTTTGGGTGTATTTGGTC
TCAGTTTGTACACAACAGAACGTGAAGTTAAAGATATGTTTGAGAAATAT
GGAAGGGTTGCAGATTGTCGTATTGTTCATGATCATGCTGTAAGTATACA
ATAAACTTGGCAGAACTTGTAAGTAGAGGTTGAGAATTTCACACTGGGTG
GTAAATATCCAGAAATATGTCTGTCATTTGAAAATTCACCGAATGTGGAT
CACTCAAGTCAAAAGAGCAACCACTGTTATAGGGGGCACAGCAAATTGGG
GCTGTTATTTTTAAGGGATACAGTCTTATTTCACCTTTGTAAATAAATCT
TTGATTATACTTTTTCTATTTATCAATTTTGACAtttaaaaggaagaaat
tttggcgggaatttaatttgggggatggccaaaaaagttttttcagaggg
aatttaatttggcggttggacgaaaaaactaaatttggcgggaatttaat
ttggcggtcgcttaaaaaaattaaccttaagatggcgtcaaaacagtgaa
aaaatagcaaaaacaccttaaaagagatcatattttcaaaatgtttaatt
tggcgggaatttaatttggcggatggcggaaaaaagaaattttggcggga
acttaatttagcggatttcagccaaatccgccaaattttctttccgccaa
aatttcttcctttaaggtagtgtGGGCCAACACTGGAGCTTCCACTTTGT
TACAAACCTTGATAATGACTACCCCTGCCTGTATTTATATTACAGTGAAA
TAAATTGAATCACAATAAGTGctcaagaaaattcgaaaaaattcaagcga
aatatcaagaaataaagaactatCTGACAATTGCCACATGGTGTTTCGAA
CAGCTCTTCCACTTTTATTTTAGACTGGACGATCTCGTGGATTTGCATTT
ATCAATATGGAATCTATAAACGGTGCTGCAGATGTAAGGAACTTTTCTTT
ATTAGAACAAAAGCCAAACACCAACAAGGGCCGGTTATTTTTAACTGAGA
TTTTAATAGACTGATAGACACATGGTTGATGACAAAAAGTATAAatttaa
agtttcttttgcaCGGGAAACCTGACAAAACTGCATTTGTTTTTCATTAC
AGGCCAAAGAACGTTTAAATGGTGCAGAACTTGATGGACGACGTATTCGT
GTAGATTACTCAATCACGCAACGTGCACACACTCCAACTCCTGGTGTTTA
CATGGGACGACCAACAAAGTAAAAAGCAATCACTTTCTTTTCTTCTGTAG
CATTTACAGTGTCATACTTATCGGGGTGGGGGGGGGAGGGGCAGGTAGTC
CCAATGAAATAAGATATGGCGAAAAGACCATATTCATTTCCCTAATGAAT
TCTTGAATTGATAACAGACAATCCTTACAGCTACTAGAAGAACtaacatg
ctcatttttttcTGCTTTTAGACGAAGTAGTTATCGTGGCGGCGGTGGTG
GNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021705XLOC_021705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036749-exon-sc0001508-1491911889:8180..8403TCONS_00036749-exon-sc0001508-1491911889:8180..8403Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1510915933:8180..8403TCONS_00036749-exon-sc0001508-1510915933:8180..8403Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1575043694:8180..8403TCONS_00036749-exon-sc0001508-1575043694:8180..8403Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1491911889:11159..11228TCONS_00036749-exon-sc0001508-1491911889:11159..11228Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1510915933:11159..11228TCONS_00036749-exon-sc0001508-1510915933:11159..11228Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1575043694:11159..11228TCONS_00036749-exon-sc0001508-1575043694:11159..11228Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1491911889:11542..11670TCONS_00036749-exon-sc0001508-1491911889:11542..11670Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1510915933:11542..11670TCONS_00036749-exon-sc0001508-1510915933:11542..11670Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1575043694:11542..11670TCONS_00036749-exon-sc0001508-1575043694:11542..11670Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1491911889:14403..14462TCONS_00036749-exon-sc0001508-1491911889:14403..14462Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1510915933:14403..14462TCONS_00036749-exon-sc0001508-1510915933:14403..14462Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1575043694:14403..14462TCONS_00036749-exon-sc0001508-1575043694:14403..14462Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1491911889:14632..14747TCONS_00036749-exon-sc0001508-1491911889:14632..14747Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1510915933:14632..14747TCONS_00036749-exon-sc0001508-1510915933:14632..14747Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1575043694:14632..14747TCONS_00036749-exon-sc0001508-1575043694:14632..14747Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1491911889:14951..14982TCONS_00036749-exon-sc0001508-1491911889:14951..14982Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1510915933:14951..14982TCONS_00036749-exon-sc0001508-1510915933:14951..14982Clytia hemisphaericaexon
TCONS_00036749-exon-sc0001508-1575043694:14951..14982TCONS_00036749-exon-sc0001508-1575043694:14951..14982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001508supercontigsc0001508:8180..14982 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0903639	3.20101	11.8204	23.9983	35.3572	27.515	24.2297	5.30506	35.9342	20.8721	31.7094	29.4821	6.7985	13.5779	19.214	12.7897	16.5853	16.6455	8.71156	12.8515	7.96986	2.46279e-07	9.78693	6.36859	0.334847	3.36541	6.68873	2.55254	9.98114	0.00235841
Blast
[Close]
BLAST of TCONS_00036749 vs. Swiss-Prot (Human)
Match: TRA2B (Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.758e-44
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:  280 HVGSREAPPTGKCLGVFGLSLYTTEREVKDMFEKYGRVADCRIVHDHATGRSRGFAFINMESINGAADAKERLNGAELDGRRIRVDYSITQRAHTPTPGVYMGRPTKRSSYR 615
            HVG+R  P    CLGVFGLSLYTTER+++++F KYG +AD  IV+D  + RSRGFAF+  E+++ A +AKER NG ELDGRRIRVD+SIT+R HTPTPG+YMGRPT  SS R
Sbjct:  107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR 218
The following BLAST results are available for this feature:
BLAST of TCONS_00036749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRA2B1.758e-4464.29Transformer-2 protein homolog beta OS=Homo sapiens... [more]
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