XLOC_014806 (gene) - C. hemisphaerica

Overview
NameXLOC_014806
Unique NameXLOC_014806
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000570:19187..24739+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_014806 ID=XLOC_014806|Name=XLOC_014806|organism=Clytia hemisphaerica|type=gene|length=5553bp|location=Sequence derived from alignment at sc0000570:19187..24739+ (Clytia hemisphaerica)
AAGCGGATCAAGACAAGCGAAAAAATGTGGGAGAAATGGAATGCAGTTTC
GACTCGTTTCCAAGAATTTATCCTTCAGGGAATCTACAAAGATATCATTG
TCTGCTAATTATATAGATGAAAATCCTCTCTAAATTTAGTAGCTAAATGA
TACCTAGATGTTGAACCAGTTTGCATAGGTACtttctgaattatttttac
tttttggattGGATTCAActgatgtttgttttgatttttgattgataACG
CAACATGTCTCAAACATTAACATCTATCCAAGCTCTAGAAAATGGAAACC
ATTTTGATAATGTCACATTCAGCAAAGGTGAAGAGGAGGGACCAAAAGTC
ACTTTTCGCAACAATAGTTTTTATATTGTGTCAGCTCTTCTCTTTCAAGA
AGATAAAGTTCTTTTGGTCAGTGAAGCAAAACATGATGGAAAATGGTATC
TTCCTGCTGGGAAAGTCAAGTATCAAGAGAGTTTAAAAGTAATATATTAT
AGTAAATGTATCAAATCAGCAGCCAAACTCCTGTGTTGTATATCAGGATT
TAAAAATTAGGCTAGTCCAGTccgggaaatcctctcaattgcacgcttat
gttccgaggccgtaagcgcgcaattgcacggttatcaaaaggcagaattt
ttaagcgtgtaatCATACGCTTAtagaaattgttctgaaacgggcaGTAA
gcggtaagcgtgcaattgcaccctttattattctgacacgcaattccttc
cgaaagctctgttgaatttcaaaagcctagggcagttttactcaaaattt
atcgtagaagaagattccgtaaaaatggattgaccgttaaaccatgcctt
cgcccgaattagagaattctgaaccccttgaaatcactaagcaatttcaa
ctgggcgggagcgggcgtaaattataaccatgcaattgcgcgcttacgcc
ctcggaacataagggtgcaattgagaggatttcccagactgtagTCTTTT
ATCTTTCTCTTTGCAACAGTACAATAgacaaaatagacctttttgccttt
ccatccgccaagCCATAAAATTATGTataaatcaggtttgttttgattta
actttataTTTTCATGACCAGACAAGTAATTTATTTGAGGGCtgatgcat
gttagcctccactgatacaAATTAAAATTACCCGAATCTCACGGTATGGC
agatggaaaggcaaaaagttgacacaacacattgacaactAATCCCTGTG
AAAAGTTTATTTCAAAATCTGctacaaaaacgaaagtggtctcttctact
gattgcctCATGGTCCTCCTTTGCagactgtttatcaaattttccaCCAA
TaagattgctgaatttcaagtAGCCCTTCTTTTCAGTGAGTACGTTGCCC
TTCAGTGCCTTGCAATTCTGGAgtgtaaaacttttaaaataaaatttcaa
actcactttttttgtttttttttgaaaaaatctgccaTTATTATGAATCA
CTTGGCCGAATGAAATATCTTTTCAGcttctttttaattttgtgtTTAAA
ATTATGTCATGAAAAAAGGGTGAACAATTGAACAAAAACAACCCAATAGA
TTTTGAGTTATTTGTAAGGCAAGACTACCCAAAAATCACTATTTCAGACC
TCGCATTttgctttttaaattttaaaaagtaagaCGTGATAGggtttatc
attcaaactgttcaaaaacatagaaaataactcacaaagttCCAAGTTCA
GTTTATCATTTTCCAATCAGAAAAAATATGAATTGGAGACTGAATGTGCA
TTTCACTACTACTGTAAAAAAGCCACAAACATCTcacaacaatgaaaata
caaaatgcATTGATCTTTTTTTCCTGCCTCCTGTCACTTAGTCAATGAAT
CCAGAATTTTGACTGTTTCAAGTTTTAATATTGAGGAAGTAGCAGGAGCA
AGAAATACCCTTTTAATAGTAGGACAAAAGGCCCATAAAGAAGcttatga
aacaaaaataaatagctTAATCTGTTCATTTGGagtgttttgtttttctc
ttgaCCTCTCAACTCTCACTTgctatttgaaaaataaaataggaCAGAAA
ATGGGATTCTTTCTTGAAGTTCTAttaatctttttattcattttatcatt
cttgTTAACACTTTCAGAATGCCTTCAAAAGGGAACTGTTGGAAGAGAGC
TCATACAAAGGAGAGCCTGATCATCTTCTTAGTATTAATGCCGGACCTGG
TGGTTGGTTTCGCTTTAATTTCATTGGTCACCAAACAGGAGGACATTTAA
AAACACCTGCTGAAGCTGACAAAGACACTTTAGAGGCAAGATGGTTTCCA
TGTTCAGAAATCTTCAATGGAGATCTTAATTACAGGTATAAAAACGATGA
CGTCTTAGGAAATCATATTCATGGTTTCATTCTGTTTCATCCCGCTTTTT
AACCCCCATCAAAAGGTTAAATCCCTCCCATTAGCCTTAGCCCCTCCATG
ACTAAAAATTATAACTTGGGGGCCCATTACAGGTCTTTGTCATTTTTTGC
ACTTATATCCTAAATAAAAATGTAAGAAACAGCATATAATAATTTTAGGA
ATCTTGCTTTATACATAATATGTATAATATTGTgtgaatcaaaagaaaaa
actacACTACTATCAATAtgttaaaatgtttaaaaatggttgaaaataga
aaataccAGGTGAAAATaccaaatgtcccaaagtgcttggagttttgata
tttagaaagtagatatcctaacttaaaatttgagccatcactttttaaat
ttgaccaacttgttctctacttatgagcttttaaagtcaaaattcacttt
tcgaaaagtgtaaaaaacacgtaaaaaacaggtattaaattcatgcaatc
aattagaaaatcacttacaaattgacttatttaacaaGTTTTaggacatt
aataattaataaaaacacctttgaaagtaatttttgtttaaacaagacta
gtttttataaaaattggcgctttcatagatttttttcgaaaactgtatat
caaaaacgtctaaaaataccaaatttgataccccttttttagttggtcaa
atttaaaaagtgatagctcaaattttaagttaggatatctactttctaaa
tatcaaaactccaagcactttgggacatttgttcggcctCAAGACGTCGG
GAAACGTCTGAACTTTTTCGTGGGTCACCCGGTACTTATACACAAAAATT
TACCCCCCATTATAAATGTCTCCCCCATCAGCCTTAGTCCCCCCagtatt
tgaaaaataaaaaaatacttgcccaggcaaaaataaaaatatgtagtgtt
tccggaatgctgGTGAAGGAAAAAGGCTCTCATGcagccggccggaaaaa
aaaatttatttatttggtatttttgatctatttttttaagtatttttaat
caataaatcgcataacatgtttttttttgctacttttgataacttaagat
cattgaaatagaactttaaagataactttaatgtacaaacagtatgaagt
aagccctgaaaacTAATGTATCAAATACTAACGAACagaacttgatttac
aagcaggaatatctaaccaaacgacatttgatagcttgaaagctcaactt
gattttctttatgatgaaccatatagatgaaATGTCAAAATGCCAGAAAA
ACAGATTTTTGggcttttcttgagattttatcaCCAACAATAAGCATTGC
TTGAAATGTGATGGAGTTGGATTTGTCATGTAATTGGATTAAAACATTAA
TGATAGCAATGCAATTTTTGTAGCTGGAACTATCTAACTATTTATATGAT
ACCTAAATGTGATACTTTCTTGGGCAATGATTATCTTAGTTCAAGGTGTT
TCCTGTAAATGCTATAAGCTATTCATCATATTTGAtgtaaaaatgtgaaa
ataaatGCTTGTGTtgtatttattaatttttttttctcaagggCCCAAGA
TATGTTTGAGGTGATAAAAGATGGTATACTTTGGAATCAACAAAATGGTG
CACTACAACGGGAAAAGTCTATCATATTGGAAAATTCATTCAACAGCTTC
TGCTTGAGACCATTAGCTTTTGATTTGAATGGGGCTAAgtatgaattttt
tcttttctctttatgCTCGTCATTGTATTTTGCATGTATCcacaatgttt
ttaaaaatagtttATACTTTTATACAACTATTTCTCCAAACATGGGAAAC
TTGACTTTACATTTTGTTGTTCCTCGAGAATCATTCTGagccaaaaaaat
catttttttcaatctgaACATTTACAAACAACTTAGGAAAGAAATTGAAC
CTTTTATCAATATCAATTTTGATACAAATGAAAACCTGCTTCTATTAAAG
TATTTATTTAAGTTTTTGGTGGTCTGCCGCAAAAAATCAGTTCGGTGGAA
TACAGTTTTaatccaaaatttggaaaacccGGGTcgggtagagcattcgc
cttacaatctaaggttTGTGGGTTTGATCCCTGGTCACTGTCAACTCAGC
GGATGattagcttagattgggtaatctgatctaagcGGTAAGTTAGTGGA
GCTGTGAGTGTGGCGccccacctcagcattcgatctctcagggctagcgc
aaatagaaaaggggatagattCCCTCACTCCTGGTTCCAACGACAGCCAC
ctgatgaatatacttacttacttacttacttaaaatTATAATTTATGATA
TGTTGTAATGAGTTCTTATTCTTTATTCAGTGTGCAATTAGCAATTCATC
ATGAAACTGGAAAAGTTCCGCTCATAAGGATGGGGATGTACTATCAAAAA
GTTGTTacagattttttccaaaaaagtggAATACAAGTCCAGGTTTTGGG
AATTTTAGCTGTAGAGCATTCACCAAGAGAAGATAGTTGGGATGGGTACT
GCTTGAATGTTATTTGTAAATTGGATCGTGAAAACTCTACAGGAATGAGC
AATTTCAAATGGATTGATTTGGATTCAAACCTTTCATCTGCAATCAACAA
AATCATTGGCACACAATCATATGTTTGGGCTTTTAAATAAGCAATTTcgc
ttttgtttttttactgtTCTCATTGAGTTTTTAGGTCATTTCAACTATTC
TGGGTCTGATTTCAATGGTAACAACGTTTCAGCATTATTTTCCTTCACAT
TTTACAAACCCAAACTATCTTCTAGCTAGTTTACTAAAACAGAAACTCAA
CCTGTTTCCTGAGGGTCAACCTTTTTAACCAAATTAGTTGATTGATTTGT
TAAAAACAACCTTGAATTCTGAAACCTAGGGGTTTACAACTGAAATCTTT
GTTATCTTTTCACATCGGTGGCGGGTCTacctaaaattttttgattttga
ttttatttttttaagaatttgaaatgtttttaaatttgtttatttattgt
tAATATTTTCATACCTGGCTTTTTTAAATTGTAGCTCACTCACAAATTAC
TTAAAAAGTGATAATTGTTGTTTTGTGCTTGTGATTTTCTGTTGATTATT
AAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00026368TCONS_00026368Clytia hemisphaericatranscript
TCONS_00026369TCONS_00026369Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00026369-proteinTCONS_00026369-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000570supercontigsc0000570:19187..24739 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28	1.22	1.23	1.39	10.19	7.56	13.17	12.31	14.24	14.69	13.44	11.27	13.87	13.17	7.05	7.93	5.72	6.74	4.68	4.46	5.84	5.21	4.92	4.74	13	16.37	5.02	4.46	5.59	5.73