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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026368 ID=TCONS_00026368|Name=TCONS_00026368|organism=Clytia hemisphaerica|type=transcript|length=1316bp
AAGCGGATCAAGACAAGCGAAAAAATGTGGGAGAAATGGAATGCAGTTTC
GACTCGTTTCCAAGAATTTATCCTTCAGGGAATCTACAAAGATATCATTG
TCTGCTAATTATATAGATGAAAATCCTCTCTAAATTTAGTAGCTAAATGA
TACCTAGATGTTGAACCAGTTTGCATAGAATGCCTTCAAAAGGGAACTGT
TGGAAGAGAGCTCATACAAAGGAGAGCCTGATCATCTTCTTAGTATTAAT
GCCGGACCTGGTGGTTGGTTTCGCTTTAATTTCATTGGTCACCAAACAGG
AGGACATTTAAAAACACCTGCTGAAGCTGACAAAGACACTTTAGAGGCAA
GATGGTTTCCATGTTCAGAAATCTTCAATGGAGATCTTAATTACAGggCC
CAAGATATGTTTGAGGTGATAAAAGATGGTATACTTTGGAATCAACAAAA
TGGTGCACTACAACGGGAAAAGTCTATCATATTGGAAAATTCATTCAACA
GCTTCTGCTTGAGACCATTAGCTTTTGATTTGAATGGGGCTAATGTGCAA
TTAGCAATTCATCATGAAACTGGAAAAGTTCCGCTCATAAGGATGGGGAT
GTACTATCAAAAAGTTGTTacagattttttccaaaaaagtggAATACAAG
TCCAGGTTTTGGGAATTTTAGCTGTAGAGCATTCACCAAGAGAAGATAGT
TGGGATGGGTACTGCTTGAATGTTATTTGTAAATTGGATCGTGAAAACTC
TACAGGAATGAGCAATTTCAAATGGATTGATTTGGATTCAAACCTTTCAT
CTGCAATCAACAAAATCATTGGCACACAATCATATGTTTGGGCTTTTAAA
TAAGCAATTTcgcttttgtttttttactgtTCTCATTGAGTTTTTAGGTC
ATTTCAACTATTCTGGGTCTGATTTCAATGGTAACAACGTTTCAGCATTA
TTTTCCTTCACATTTTACAAACCCAAACTATCTTCTAGCTAGTTTACTAA
AACAGAAACTCAACCTGTTTCCTGAGGGTCAACCTTTTTAACCAAATTAG
TTGATTGATTTGTTAAAAACAACCTTGAATTCTGAAACCTAGGGGTTTAC
AACTGAAATCTTTGTTATCTTTTCACATCGGTGGCGGGTCTacctaaaat
tttttgattttgattttatttttttaagaatttgaaatgtttttaaattt
gtttatttattgttAATATTTTCATACCTGGCTTTTTTAAATTGTAGCTC
ACTCACAAATTACTTAAAAAGTGATAATTGTTGTTTTGTGCTTGTGATTT
TCTGTTGATTATTAAT Run BLAST on NCBI transcript from alignment at sc0000570:19187..24739+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026368 ID=TCONS_00026368|Name=TCONS_00026368|organism=Clytia hemisphaerica|type=transcript|length=5553bp|location=Sequence derived from alignment at sc0000570:19187..24739+ (Clytia hemisphaerica)
AAGCGGATCAAGACAAGCGAAAAAATGTGGGAGAAATGGAATGCAGTTTC
GACTCGTTTCCAAGAATTTATCCTTCAGGGAATCTACAAAGATATCATTG
TCTGCTAATTATATAGATGAAAATCCTCTCTAAATTTAGTAGCTAAATGA
TACCTAGATGTTGAACCAGTTTGCATAGGTACtttctgaattatttttac
tttttggattGGATTCAActgatgtttgttttgatttttgattgataACG
CAACATGTCTCAAACATTAACATCTATCCAAGCTCTAGAAAATGGAAACC
ATTTTGATAATGTCACATTCAGCAAAGGTGAAGAGGAGGGACCAAAAGTC
ACTTTTCGCAACAATAGTTTTTATATTGTGTCAGCTCTTCTCTTTCAAGA
AGATAAAGTTCTTTTGGTCAGTGAAGCAAAACATGATGGAAAATGGTATC
TTCCTGCTGGGAAAGTCAAGTATCAAGAGAGTTTAAAAGTAATATATTAT
AGTAAATGTATCAAATCAGCAGCCAAACTCCTGTGTTGTATATCAGGATT
TAAAAATTAGGCTAGTCCAGTccgggaaatcctctcaattgcacgcttat
gttccgaggccgtaagcgcgcaattgcacggttatcaaaaggcagaattt
ttaagcgtgtaatCATACGCTTAtagaaattgttctgaaacgggcaGTAA
gcggtaagcgtgcaattgcaccctttattattctgacacgcaattccttc
cgaaagctctgttgaatttcaaaagcctagggcagttttactcaaaattt
atcgtagaagaagattccgtaaaaatggattgaccgttaaaccatgcctt
cgcccgaattagagaattctgaaccccttgaaatcactaagcaatttcaa
ctgggcgggagcgggcgtaaattataaccatgcaattgcgcgcttacgcc
ctcggaacataagggtgcaattgagaggatttcccagactgtagTCTTTT
ATCTTTCTCTTTGCAACAGTACAATAgacaaaatagacctttttgccttt
ccatccgccaagCCATAAAATTATGTataaatcaggtttgttttgattta
actttataTTTTCATGACCAGACAAGTAATTTATTTGAGGGCtgatgcat
gttagcctccactgatacaAATTAAAATTACCCGAATCTCACGGTATGGC
agatggaaaggcaaaaagttgacacaacacattgacaactAATCCCTGTG
AAAAGTTTATTTCAAAATCTGctacaaaaacgaaagtggtctcttctact
gattgcctCATGGTCCTCCTTTGCagactgtttatcaaattttccaCCAA
TaagattgctgaatttcaagtAGCCCTTCTTTTCAGTGAGTACGTTGCCC
TTCAGTGCCTTGCAATTCTGGAgtgtaaaacttttaaaataaaatttcaa
actcactttttttgtttttttttgaaaaaatctgccaTTATTATGAATCA
CTTGGCCGAATGAAATATCTTTTCAGcttctttttaattttgtgtTTAAA
ATTATGTCATGAAAAAAGGGTGAACAATTGAACAAAAACAACCCAATAGA
TTTTGAGTTATTTGTAAGGCAAGACTACCCAAAAATCACTATTTCAGACC
TCGCATTttgctttttaaattttaaaaagtaagaCGTGATAGggtttatc
attcaaactgttcaaaaacatagaaaataactcacaaagttCCAAGTTCA
GTTTATCATTTTCCAATCAGAAAAAATATGAATTGGAGACTGAATGTGCA
TTTCACTACTACTGTAAAAAAGCCACAAACATCTcacaacaatgaaaata
caaaatgcATTGATCTTTTTTTCCTGCCTCCTGTCACTTAGTCAATGAAT
CCAGAATTTTGACTGTTTCAAGTTTTAATATTGAGGAAGTAGCAGGAGCA
AGAAATACCCTTTTAATAGTAGGACAAAAGGCCCATAAAGAAGcttatga
aacaaaaataaatagctTAATCTGTTCATTTGGagtgttttgtttttctc
ttgaCCTCTCAACTCTCACTTgctatttgaaaaataaaataggaCAGAAA
ATGGGATTCTTTCTTGAAGTTCTAttaatctttttattcattttatcatt
cttgTTAACACTTTCAGAATGCCTTCAAAAGGGAACTGTTGGAAGAGAGC
TCATACAAAGGAGAGCCTGATCATCTTCTTAGTATTAATGCCGGACCTGG
TGGTTGGTTTCGCTTTAATTTCATTGGTCACCAAACAGGAGGACATTTAA
AAACACCTGCTGAAGCTGACAAAGACACTTTAGAGGCAAGATGGTTTCCA
TGTTCAGAAATCTTCAATGGAGATCTTAATTACAGGTATAAAAACGATGA
CGTCTTAGGAAATCATATTCATGGTTTCATTCTGTTTCATCCCGCTTTTT
AACCCCCATCAAAAGGTTAAATCCCTCCCATTAGCCTTAGCCCCTCCATG
ACTAAAAATTATAACTTGGGGGCCCATTACAGGTCTTTGTCATTTTTTGC
ACTTATATCCTAAATAAAAATGTAAGAAACAGCATATAATAATTTTAGGA
ATCTTGCTTTATACATAATATGTATAATATTGTgtgaatcaaaagaaaaa
actacACTACTATCAATAtgttaaaatgtttaaaaatggttgaaaataga
aaataccAGGTGAAAATaccaaatgtcccaaagtgcttggagttttgata
tttagaaagtagatatcctaacttaaaatttgagccatcactttttaaat
ttgaccaacttgttctctacttatgagcttttaaagtcaaaattcacttt
tcgaaaagtgtaaaaaacacgtaaaaaacaggtattaaattcatgcaatc
aattagaaaatcacttacaaattgacttatttaacaaGTTTTaggacatt
aataattaataaaaacacctttgaaagtaatttttgtttaaacaagacta
gtttttataaaaattggcgctttcatagatttttttcgaaaactgtatat
caaaaacgtctaaaaataccaaatttgataccccttttttagttggtcaa
atttaaaaagtgatagctcaaattttaagttaggatatctactttctaaa
tatcaaaactccaagcactttgggacatttgttcggcctCAAGACGTCGG
GAAACGTCTGAACTTTTTCGTGGGTCACCCGGTACTTATACACAAAAATT
TACCCCCCATTATAAATGTCTCCCCCATCAGCCTTAGTCCCCCCagtatt
tgaaaaataaaaaaatacttgcccaggcaaaaataaaaatatgtagtgtt
tccggaatgctgGTGAAGGAAAAAGGCTCTCATGcagccggccggaaaaa
aaaatttatttatttggtatttttgatctatttttttaagtatttttaat
caataaatcgcataacatgtttttttttgctacttttgataacttaagat
cattgaaatagaactttaaagataactttaatgtacaaacagtatgaagt
aagccctgaaaacTAATGTATCAAATACTAACGAACagaacttgatttac
aagcaggaatatctaaccaaacgacatttgatagcttgaaagctcaactt
gattttctttatgatgaaccatatagatgaaATGTCAAAATGCCAGAAAA
ACAGATTTTTGggcttttcttgagattttatcaCCAACAATAAGCATTGC
TTGAAATGTGATGGAGTTGGATTTGTCATGTAATTGGATTAAAACATTAA
TGATAGCAATGCAATTTTTGTAGCTGGAACTATCTAACTATTTATATGAT
ACCTAAATGTGATACTTTCTTGGGCAATGATTATCTTAGTTCAAGGTGTT
TCCTGTAAATGCTATAAGCTATTCATCATATTTGAtgtaaaaatgtgaaa
ataaatGCTTGTGTtgtatttattaatttttttttctcaagggCCCAAGA
TATGTTTGAGGTGATAAAAGATGGTATACTTTGGAATCAACAAAATGGTG
CACTACAACGGGAAAAGTCTATCATATTGGAAAATTCATTCAACAGCTTC
TGCTTGAGACCATTAGCTTTTGATTTGAATGGGGCTAAgtatgaattttt
tcttttctctttatgCTCGTCATTGTATTTTGCATGTATCcacaatgttt
ttaaaaatagtttATACTTTTATACAACTATTTCTCCAAACATGGGAAAC
TTGACTTTACATTTTGTTGTTCCTCGAGAATCATTCTGagccaaaaaaat
catttttttcaatctgaACATTTACAAACAACTTAGGAAAGAAATTGAAC
CTTTTATCAATATCAATTTTGATACAAATGAAAACCTGCTTCTATTAAAG
TATTTATTTAAGTTTTTGGTGGTCTGCCGCAAAAAATCAGTTCGGTGGAA
TACAGTTTTaatccaaaatttggaaaacccGGGTcgggtagagcattcgc
cttacaatctaaggttTGTGGGTTTGATCCCTGGTCACTGTCAACTCAGC
GGATGattagcttagattgggtaatctgatctaagcGGTAAGTTAGTGGA
GCTGTGAGTGTGGCGccccacctcagcattcgatctctcagggctagcgc
aaatagaaaaggggatagattCCCTCACTCCTGGTTCCAACGACAGCCAC
ctgatgaatatacttacttacttacttacttaaaatTATAATTTATGATA
TGTTGTAATGAGTTCTTATTCTTTATTCAGTGTGCAATTAGCAATTCATC
ATGAAACTGGAAAAGTTCCGCTCATAAGGATGGGGATGTACTATCAAAAA
GTTGTTacagattttttccaaaaaagtggAATACAAGTCCAGGTTTTGGG
AATTTTAGCTGTAGAGCATTCACCAAGAGAAGATAGTTGGGATGGGTACT
GCTTGAATGTTATTTGTAAATTGGATCGTGAAAACTCTACAGGAATGAGC
AATTTCAAATGGATTGATTTGGATTCAAACCTTTCATCTGCAATCAACAA
AATCATTGGCACACAATCATATGTTTGGGCTTTTAAATAAGCAATTTcgc
ttttgtttttttactgtTCTCATTGAGTTTTTAGGTCATTTCAACTATTC
TGGGTCTGATTTCAATGGTAACAACGTTTCAGCATTATTTTCCTTCACAT
TTTACAAACCCAAACTATCTTCTAGCTAGTTTACTAAAACAGAAACTCAA
CCTGTTTCCTGAGGGTCAACCTTTTTAACCAAATTAGTTGATTGATTTGT
TAAAAACAACCTTGAATTCTGAAACCTAGGGGTTTACAACTGAAATCTTT
GTTATCTTTTCACATCGGTGGCGGGTCTacctaaaattttttgattttga
ttttatttttttaagaatttgaaatgtttttaaatttgtttatttattgt
tAATATTTTCATACCTGGCTTTTTTAAATTGTAGCTCACTCACAAATTAC
TTAAAAAGTGATAATTGTTGTTTTGTGCTTGTGATTTTCTGTTGATTATT
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026368-exon-sc0000570-1491911889:19187..19364 | TCONS_00026368-exon-sc0000570-1491911889:19187..19364 | Clytia hemisphaerica | exon |
| TCONS_00026368-exon-sc0000570-1510915933:19187..19364 | TCONS_00026368-exon-sc0000570-1510915933:19187..19364 | Clytia hemisphaerica | exon |
| TCONS_00026368-exon-sc0000570-1575043694:19187..19364 | TCONS_00026368-exon-sc0000570-1575043694:19187..19364 | Clytia hemisphaerica | exon |
| TCONS_00026368-exon-sc0000570-1491911889:21354..21571 | TCONS_00026368-exon-sc0000570-1491911889:21354..21571 | Clytia hemisphaerica | exon |
| TCONS_00026368-exon-sc0000570-1510915933:21354..21571 | TCONS_00026368-exon-sc0000570-1510915933:21354..21571 | Clytia hemisphaerica | exon |
| TCONS_00026368-exon-sc0000570-1575043694:21354..21571 | TCONS_00026368-exon-sc0000570-1575043694:21354..21571 | Clytia hemisphaerica | exon |
| TCONS_00026368-exon-sc0000570-1491911889:23178..23324 | TCONS_00026368-exon-sc0000570-1491911889:23178..23324 | Clytia hemisphaerica | exon |
| TCONS_00026368-exon-sc0000570-1510915933:23178..23324 | TCONS_00026368-exon-sc0000570-1510915933:23178..23324 | Clytia hemisphaerica | exon |
| TCONS_00026368-exon-sc0000570-1575043694:23178..23324 | TCONS_00026368-exon-sc0000570-1575043694:23178..23324 | Clytia hemisphaerica | exon |
| TCONS_00026368-exon-sc0000570-1491911889:23967..24739 | TCONS_00026368-exon-sc0000570-1491911889:23967..24739 | Clytia hemisphaerica | exon |
| TCONS_00026368-exon-sc0000570-1510915933:23967..24739 | TCONS_00026368-exon-sc0000570-1510915933:23967..24739 | Clytia hemisphaerica | exon |
| TCONS_00026368-exon-sc0000570-1575043694:23967..24739 | TCONS_00026368-exon-sc0000570-1575043694:23967..24739 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000570 | supercontig | sc0000570:19187..24739 + |
Blast
The following BLAST results are available for this feature:
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