XLOC_011154 (gene) - C. hemisphaerica

Overview
NameXLOC_011154
Unique NameXLOC_011154
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000338:260793..269725+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_011154 ID=XLOC_011154|Name=XLOC_011154|organism=Clytia hemisphaerica|type=gene|length=8933bp|location=Sequence derived from alignment at sc0000338:260793..269725+ (Clytia hemisphaerica)
ttcacactgagacaggggtgtcatgaAATGGAACATAATCAAAAGATATC
CAACAATTAGAAGCGGGTTGGTATAGTGGTTATAATCCTTGACTCCTGCC
TGTGGGGAAGggcaagtgaatataccttcgTCTGGGTCACTGAGTACCAG
GTGAGGACATACTAAATTTTACTGCTCTTTTTATAACATGaagcaattat
ttttcaaatgaaatctTGACAATGGATTATTAATAATACAATTCGACGAA
CTATTCAAAACATTTGACGCTGGCTTAATTATTCAAACTGAGACGGGGGT
GTCGCAAAATGGACTCGACTGAAGAAGACTCTAACATGAAGAAGACTACC
CCGTTACCGAAAGCAACAGTTGCAGTGCTATTTTCTGTTATGGTAAGTAA
TCTTGGAGGTGGTGCTCAGTAGtgtagccaagaggggcgcaaaatttgtg
taggagaacaGAATTTTATAACACTGTAGTAATCATCTATTCAtgaatct
gctctcctacacaaattttgcgcccgtCTTGGCTATGCTACTGGGTACTA
TGGTTGAGGGATATATGGTACGGCCTGCGAacccttacccttagagagac
tgactTTTGCTGATAAGGTGACCCTAAGTTGCTAAAAACATAACTCTTAC
TCTTTAGGgagactttttcacaaaaatttctacgattttcaaaaaataaa
atttttccaatactcgagtttgtgaaaaaaacCGACAATACTGCTATTag
tttttttgctgttttgttAACCCTTactttagagagactttgggagggCG
GTGAAAAACCAAACCCTTAATAAGTACATACACAGTGCCAGTGGTAAGTA
ATCTAATTTTATCGAAATAAACCTTTTTGATACATTGCtcataaaggaaa
aaaagatcttGTAGATCTCTTTACGATTAATTTAATTTCAGTACTTCACA
GAacttgtgatgacgtcatcattttcatatCTCCCAAAACTAATTCAAGA
GTTTGGTATCAGCAATGTTAATGTGGGTAAGATATTTTGTCTATTACATG
ATTTTTtacataagaacaaactatataagaacatcaggcTTCGGTGGACA
AGATATTAACAATTTAAGAAAGTTTTAAGGCTATACACTCAAATAGTCAA
GAACGTCTGAAGGCTCTGGGGGGGGGGACCTATacgatctggcctacgtc
atgtacCGCACTTAATGGTGGggttttcagcatcccaaaatgcactgtga
gggtgtgtttctgtgagattgcactgcaagagtcgaattttaaaacaaat
tcaaaataattgttaaaaagaaaggttattACGTCCCGTTTGTTTggaaa
agtttctattgtctgataattacagctgacaagaataattttctaagttt
ttctttgaaacaagaaatttcccaagcttctttttttcacgcagatttac
agcgacgccgggtgacggctagtagtgcactataagggttgggtaaatca
agagaaaatgcactgaaagggtaccttttcagcgaTATTGAACTGCATTG
TAAGGGtacaattttgaaaagcagtttttgcgcggcacataccgtcgttt
ccaaatcgagtgcccccccccgggctccTAAAGCTAGCTACAGCTATTTT
ATGTGTATTCCAGTGGGGACATTATCTTAATTACGGTTTGAGCTCTCCTT
CTTGATGAAAGCTGCTCTGCCTCGTCCCAAATGGCATTTTTGAAGGTAGC
AAATcatacctaagtcacgtgacattataatagaatttcagcgcttgacc
aatcggaagcttcgcgggttttcgaaaacaatagcaataaTCTTTTTTCC
gatactcaattttttttgcctgcgatggatTAAAGCCCGACATCTTCGTG
CTAGATGATCTATGATCGGAATACGCTTATTTTGATGTATGATTCACCAT
ACTAAGAGGGATGGAACTGCTTCCGAGAATTtactttgaatattttaaat
tgaATATGGATGTTTTTCGTTTATTTCAATTTCAGGATATTATGCTGGTA
TTCTCGTATCTTGCATGTATATTGGTCGTACTGTGATGAGGTAAGGTATT
CTCGTATCATGCATGTATATTGGTCGTACTGTGATGAGGTAAGGTATTCT
CGTATCTTGCATGTATATTGGTCGTACTGTGATGAGGTAAGGTATTCTCG
TATCTTGCATGTATATTGGTCGTACTGTGATGAGGTAAGGTATTCTCGTA
TCATGCATGTATATTGGTCGTACTGTGATGAGGTAAGGACTGTTTCTCCG
TGAAAAAATGTATAAGAACAAATATGACTAAAATATtaaacatccctgtc
tcatagccccagtggaactttttttttctgtGGGGATAAGCGATAATGGG
GATAAAAGCTCTATTGCTCCatccaaggttaaaaaaactcagtggggatg
gtttcggAGTGCAacttttaaacatggaatttcgagtgaGAATACAATCa
gagtcaatttcccagtggggctgaaattcaagggtattttcccaccgggg
acgagaaaattttgctcaattttccagtggggctggggtcccgcaaactt
tttttccgtcagcgaacgcagacctgatttagcggtcgaagacctgaatt
aacggccgaagacctgatttaACGGCCGAACCTGATTTAACAAGTCACCG
GTCGAATACCTGATAGATAAGTTAGGGTCAGTTAAACTAGTTAAAGTAGC
TTGAACCACTCGGCAAGGCATCAGTGGCGATGGCCCAGTGCGTGGTTAGT
GCAGTGATATCGAAGACGAAAGATGGGTGGTATCGAAGACGAAAGATAGG
TAGTTCGAGACGAGTTATTGGcattaattttcattctttttaatttaaaa
tcttttaatttaatttgttttcaatactatttcccattgaaacatcatat
aaaaatcttgattgaatTTATAAAAGAGATTTATAGCAAATTTCCACAAT
TCATTTTctccaggtcttcggccgttaaaaAAGTATTCGACCACTGCACC
AAGTCTTCGGtttttaattcaggtcttcggtcgctaaatcaggtctgcgA
CCGCTAATTCAGGTCTGCGTCCGCTGacgaaacaaaaatctgctggggtc
ccagcgggtctatgacacaggggtgttattaaCAATAAAATGAGAGCATT
TTGAGGTTTCGTAAGATTTGAAACATCCAATTCTTAGAAAATTGCTcaga
aatactcaaaaaaggtgaaaagAGAGCATTTTAAAaataggcttaaaact
caaaagtgaagaacatcagaaggctttaaaaattgatgttcttataaaag
aaattgcATGCTATCATGCTTTTCTTTCAAACTTTAGCTTTGTGACTGGG
TATATGACGGATAGCATTGGGCATCGTGCGACGTTAATGATCTTATGTAC
TGGCATCACCATCAGTACCTTCTTTTTCGCATTTACGAATTCTTATGAAT
GGGCTATCGTTTGTCGCACTATACAAGGAACCTGGCTGTGTGCATACATT
ACTGTTAAGGTGAATATTGTGTTTCAACCCTGTCCCTCACGGgagggacc
taattgccggggggttggaattactgctgaaaatccaaaaataaggtaaa
tataggctaaaatcaggatATTTCGAGCGAAATAAGGGACCTTCTTTTTG
ACggctaaaaatattcttagaaaTTAATAAGctgggggggggtcctaata
aggtccggtgGGGGTCGGAAAATTTTCAAGCAATTAATAAGCGGGAGGCC
CCTTTATTTCGAACCTAAGAGTGCAAAACTTTGAACTGGTCGTATACACT
TTAGGGAGTACTTTCATACACTTGTGACGAAACAAATGCCAGTGACGCAA
TCACATGGATGTCTGCTTCAAAGACTCTTGCCATGGTTACAGGGCAAACT
TTAGGAGGTAAAGATACTGTTTTAACTTTAactttcaaagactttaaaCT
ATGATAAAAGCTTTTAACTTGAAAGTTAGACAATAGCTTTGGTTCCATTA
GAAagacatttttaaatttttcaatctttttaatCAAGTGGTCTTGAATT
ATAGCCTTAAGTCTGGGACTTGATATATTGGCTGATTTTGAATGTACATA
CACGTCATTTAGGTCAAATAGaccctttaaaaatatttttggtgctGAAG
ACAATTACTATTGCCCTTCAATTATGATTTTTAGTCATTATTGGCGGTTC
GGAGtaatttgaaagaaagaaatctatgtttagatttagatttattCGTC
tggtaaaaatgaaattttccttgtaaattcattaaCAGTTCGCTCAAAGG
CCGACTGCACTATCAAATAaacagattttaaacccatttttAAGAGCACC
GTAAAAACATTTAAACcttaaaacttcaaaaaattaagaacagctcagcc
tgagccaaaatttactggttcttataacaAAAGTAAGTATATTACATTTT
CACTTTCATAGTTTCGATATgtctttttttgtcttttagCATTTACAAGC
TTTCCAGCTGAACAATATCCAAGTGTTTTTCCAAAAGGTAATCTCTGAAT
TTTCATTTCGATGGACTTTGGACTTGTTCCAAAAAGAGCGAGTAATCAAA
ATTCTGACTAAATATATCAAAGTCCAGTTCTGAAAGTTCAAAACACGGAT
TGTCTTTAAGAGAGATACATATCTGAGGCTCCAGCCGTAATGGGTGGTAG
ATGGAGAAAAACAGCGGTAAAGTTTGGAAGAAGCTGTAAAAAACTCAGGA
GCTGTTTACTCCACCCCAGGGTTGATCTACCTCCTAAATTATTCCCCCTT
TTTAGTGACCTTGCGTagagacgataggatcgtcaaCCTTTTCAAATATC
ATTTCGGttattcccagctggcacacaacgttgtttatggacgttgtgaa
tgtcagaaaaacgttgaaacgcTGGGTTCATATTCTCtgttttttgtcta
ttttgttCAGATTCCATTTTCGGTCATTATAAAATCTTGATACCAAATAT
GGTCATTGCACTTGGAATGTTAATGACAACCATATCTATTTGGAACATCA
TTTATTCAAAATCGAAACAGAGAGAAATGTAAGTTCATGAAACTGTGACT
TTGCGTAATGTCGACAAACGTTGTCTAATTTcgtcatagcaactatctgg
tctgcaaagtagTTAGAGTACTAATCTTTTTAAACAGCTCACTTCAGaat
gttttatttataaacatttaaaagactAGATAGTTGCTATGGTGGAATTA
TACAGGATACTATAGTTATATGGGTGTttaagcatagtataagaaagccg
cggctggaatgataacatctgaatttctgttgttctatctctgtcgtatt
tgatgactatttgttgatcaagaaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNgaaatctttttagaaatcaatgaaatagtacatcaagataat
actgtgaaaatttcaagccagcaccttcaaaatttatcattcaaactgac
aggaaagttgtgaTCGTGAATatatttcttataattttaattttggcgat
agactatcgtttccacaaaatacccctaaaatatgtctaAAATCAGTTCA
AGTTTTCTATTGTACAGATTCAAAAatatctagcaataaaaaaccttttg
tgaaggaaaataagaaaaaatttcaaaaactatctaccaataataaactg
acaatcttgatgttcttataaagctcggagacagagatagaacagcaatt
aactgaaaagacaatgcagtacatattccagccgcggctttcttatacta
tggtttaAGGTtatacgataattgttacgggaaAATATCATTTGTATAAC
GTACAATTGGTCctttccattattttttgcttaattAAACATCAAATTGG
ACTTTGTTAGTGTAAATTTAAGTATGTTAGGGGATTCGCTGCATCGAAAG
GGGGTTTAAAGGAATTTTCATTTGCGTGTCCAATTTCCGTCGTTTGGTCA
ACGAATATGCCAGTCTTAAATCCTATTATATCTAACCCACAGActtttat
ataccctggaccaagctatatccatcATTCTTTGACCGGAGTTTTCTTTA
AAGTGCAGCTGTTAATAATTAATGTTTAACGGCGctaaatcatcaaaagt
attgaggaaaagtagatctagcgctctcgatgcatttacaccgctattga
gtagtactactattagggtaccactttcaaaaaaattccgaTGACCAGGA
TTGAGAAACTTAGTCCATAGTATATAAAGATCAGTGATCTAACCTTCCCA
TTAAGATTGAGAAATGGAATCACGCTAACTATAATTTCGATTCTTGGGCG
cttccaaaaaatttgaatatggaggCTGGAGGatataaatttttatcccc
ttacattgtgacttttgaccccctcCCCAGACAACATGTCTCACCCcttg
gacaagcatcagttgaacCCCGGACACTCGAAATTGTCCCTaaaacagag
caagtttgcccCTAAGTCAATTTctgcagatttttcactactcCCACTAC
ATATCCAATATATTCTCCAATAGCAGGGGCTCTTTCAGAAAATTTTCgta
aagagggggggggggctttacgaaatttttttggaagagctcctgctaaa
aataggctaaaaatattattttctgtATATACAGTTGCTCCTAAAGAGTT
GGGACTTTCCAAATATTTGATATTCCCTCCCTCTTGCCGTACACCCAGTG
AACAATAGTAATGACACCATTCAAACAATATACTGGCTAAACTCCATTCT
CctccttcactgcgtacgttcTAAATGGATGGCGGCTTCTTCCAAAACAT
CATATTTTCTTTTCAGTctcgaaaagaaaaatgtattgTTGCAGCAGGAA
AAAGACTCTCGAAGTGACGAATCATTGGTAGTTAGATACATCAAGCTTTT
aaagtaattctttttttttttttttataaattcctttgaaatttttagac
TCGAGAAAAGTATTTTACGGACCGGCCCAAAATTTCCCTTTTTACCTATT
CAGCCCTAGATTACTGTAACTGGTGATTAgaaaatgctattgacttgaaa
ttttgaaatagtgTCATATAGTGATAATACAACGTGGCAATCGAGCggtt
atgctgaaagtgagcattttaggtaaaaaaaggaccggtctgtaaaatac
caaccacaACAACCNtagttccaatcttgttcaaatttacaaatgagctg
cattttagtctccattgccatattccatttaatcggtatttgaaatataa
attcCGTGTTGtctgttgagtttgaaaaatcaagccaccaattcgttaaa
cgagacagatctagaaataaccattttcacacgtagtatcattgaaaaag
ttccaatcttgttatANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
ACGGGAAAATATCATTTGTATAACGTACAATTGGTCctttccattatttt
ttgcttaattAAACATCAAATTGGACTTTGTTAGTGTAAATTTAAGTATG
TTAGGGGATTCGCTGCATCGAAAGGGGGTTTAAAGGAATTTTCATTTGCG
TGTCCAATTTCCGTCGTTTGGTCAACGAATATGCCAGTCTTAAATCCTAT
TATATCTAACCCAcagacctttatataccctggaccaagctatatctatC
ATTTTTTGACAGGAGTTTTCTTTAAAGTGCAGCTGTTAATAAATTAATGT
TAAACGGCGctaaatcatcaaaagtatttgaggaaaagtaaatctagcgc
tctcgatgcatttacaccgctattgagtagtactactattagggtaccac
tttcaaaaaaattccgaTGGCCAGGATTGAGAAAATTAGTCCAgagtata
taaaggtcagtgatctAACCTCCCCATTAAGATTGAAAAATGGAATCACG
GTAACTATAATTTCGATTCTTGGGcgtttccagaaaaaatttgaatatgg
aggCTGGAGGATATAAAAGTCTTTGGAAATTTACTAGTAATGACACCATT
CAAACAATATACTGGCTAAACTCCATTCTCctccttcactgcgtacgttc
TAAATGGATGGCGGCTTCTTCCAAAACATCATATTTTCTTTTCAGTCTCG
AAAAGAAAGATGTATTGTTGCAGCAGGAAAAAGACTCTCAAAGTGACGAA
TCATTGATAATTAGATACATCAAGCTGTTAAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00019827TCONS_00019827Clytia hemisphaericatranscript
TCONS_00019828TCONS_00019828Clytia hemisphaericatranscript
TCONS_00019829TCONS_00019829Clytia hemisphaericatranscript
TCONS_00019830TCONS_00019830Clytia hemisphaericatranscript
TCONS_00019831TCONS_00019831Clytia hemisphaericatranscript
TCONS_00019832TCONS_00019832Clytia hemisphaericatranscript
TCONS_00019833TCONS_00019833Clytia hemisphaericatranscript
TCONS_00019834TCONS_00019834Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00019828-proteinTCONS_00019828-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:260793..269725 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.33	20.09	8.33	6.11	26.54	18.53	26.06	27.03	52.93	60.27	49.71	43.44	6.01	4.45	6.79	8.78	17.9	17.82	4.09	3.69	44.58	42.32	12.99	14.34	7.9	8.28	0.43	0.23	4.37	5.76