TCONS_00019830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019830
Unique NameTCONS_00019830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length661

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019830 ID=TCONS_00019830|Name=TCONS_00019830|organism=Clytia hemisphaerica|type=transcript|length=661bp
TACTTCACAGAacttgtgatgacgtcatcattttcatatCTCCCAAAACT
AATTCAAGAGTTTGGTATCAGCAATGTTAATGTGGGATATTATGCTGGTA
TTCTCGTATCTTGCATGTATATTGGTCGTACTGTGATGAGCTTTGTGACT
GGGTATATGACGGATAGCATTGGGCATCGTGCGACGTTAATGATCTTATG
TACTGGCATCACCATCAGTACCTTCTTTTTCGCATTTACGAATTCTTATG
AATGGGCTATCGTTTGTCGCACTATACAAGGAACCTGGCTGTGTGCATAC
ATTACTGTTAAGGGAGTACTTTCATACACTTGTGACGAAACAAATGCCAG
TGACGCAATCACATGGATGTCTGCTTCAAAGACTCTTGCCATGGTTACAG
GGCAAACTTTAGGAGCATTTACAAGCTTTCCAGCTGAACAATATCCAAGT
GTTTTTCCAAAAGATTCCATTTTCGGTCATTATAAAATCTTGATACCAAA
TATGGTCATTGCACTTGGAATGTTAATGACAACCATATCTATTTGGAACA
TCATTTATTCAAAATCGAAACAGAGAGAAATTctcgaaaagaaaaatgta
ttgTTGCAGCAGGAAAAAGACTCTCGAAGTGACGAATCATTGGTAGTTAG
ATACATCAAGC
Run BLAST on NCBI

transcript from alignment at sc0000338:261734..268438+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019830 ID=TCONS_00019830|Name=TCONS_00019830|organism=Clytia hemisphaerica|type=transcript|length=6705bp|location=Sequence derived from alignment at sc0000338:261734..268438+ (Clytia hemisphaerica)
TACTTCACAGAacttgtgatgacgtcatcattttcatatCTCCCAAAACT
AATTCAAGAGTTTGGTATCAGCAATGTTAATGTGGGTAAGATATTTTGTC
TATTACATGATTTTTtacataagaacaaactatataagaacatcaggcTT
CGGTGGACAAGATATTAACAATTTAAGAAAGTTTTAAGGCTATACACTCA
AATAGTCAAGAACGTCTGAAGGCTCTGGGGGGGGGGACCTATacgatctg
gcctacgtcatgtacCGCACTTAATGGTGGggttttcagcatcccaaaat
gcactgtgagggtgtgtttctgtgagattgcactgcaagagtcgaatttt
aaaacaaattcaaaataattgttaaaaagaaaggttattACGTCCCGTTT
GTTTggaaaagtttctattgtctgataattacagctgacaagaataattt
tctaagtttttctttgaaacaagaaatttcccaagcttctttttttcacg
cagatttacagcgacgccgggtgacggctagtagtgcactataagggttg
ggtaaatcaagagaaaatgcactgaaagggtaccttttcagcgaTATTGA
ACTGCATTGTAAGGGtacaattttgaaaagcagtttttgcgcggcacata
ccgtcgtttccaaatcgagtgcccccccccgggctccTAAAGCTAGCTAC
AGCTATTTTATGTGTATTCCAGTGGGGACATTATCTTAATTACGGTTTGA
GCTCTCCTTCTTGATGAAAGCTGCTCTGCCTCGTCCCAAATGGCATTTTT
GAAGGTAGCAAATcatacctaagtcacgtgacattataatagaatttcag
cgcttgaccaatcggaagcttcgcgggttttcgaaaacaatagcaataaT
CTTTTTTCCgatactcaattttttttgcctgcgatggatTAAAGCCCGAC
ATCTTCGTGCTAGATGATCTATGATCGGAATACGCTTATTTTGATGTATG
ATTCACCATACTAAGAGGGATGGAACTGCTTCCGAGAATTtactttgaat
attttaaattgaATATGGATGTTTTTCGTTTATTTCAATTTCAGGATATT
ATGCTGGTATTCTCGTATCTTGCATGTATATTGGTCGTACTGTGATGAGG
TAAGGTATTCTCGTATCATGCATGTATATTGGTCGTACTGTGATGAGGTA
AGGTATTCTCGTATCTTGCATGTATATTGGTCGTACTGTGATGAGGTAAG
GTATTCTCGTATCTTGCATGTATATTGGTCGTACTGTGATGAGGTAAGGT
ATTCTCGTATCATGCATGTATATTGGTCGTACTGTGATGAGGTAAGGACT
GTTTCTCCGTGAAAAAATGTATAAGAACAAATATGACTAAAATATtaaac
atccctgtctcatagccccagtggaactttttttttctgtGGGGATAAGC
GATAATGGGGATAAAAGCTCTATTGCTCCatccaaggttaaaaaaactca
gtggggatggtttcggAGTGCAacttttaaacatggaatttcgagtgaGA
ATACAATCagagtcaatttcccagtggggctgaaattcaagggtattttc
ccaccggggacgagaaaattttgctcaattttccagtggggctggggtcc
cgcaaactttttttccgtcagcgaacgcagacctgatttagcggtcgaag
acctgaattaacggccgaagacctgatttaACGGCCGAACCTGATTTAAC
AAGTCACCGGTCGAATACCTGATAGATAAGTTAGGGTCAGTTAAACTAGT
TAAAGTAGCTTGAACCACTCGGCAAGGCATCAGTGGCGATGGCCCAGTGC
GTGGTTAGTGCAGTGATATCGAAGACGAAAGATGGGTGGTATCGAAGACG
AAAGATAGGTAGTTCGAGACGAGTTATTGGcattaattttcattcttttt
aatttaaaatcttttaatttaatttgttttcaatactatttcccattgaa
acatcatataaaaatcttgattgaatTTATAAAAGAGATTTATAGCAAAT
TTCCACAATTCATTTTctccaggtcttcggccgttaaaaAAGTATTCGAC
CACTGCACCAAGTCTTCGGtttttaattcaggtcttcggtcgctaaatca
ggtctgcgACCGCTAATTCAGGTCTGCGTCCGCTGacgaaacaaaaatct
gctggggtcccagcgggtctatgacacaggggtgttattaaCAATAAAAT
GAGAGCATTTTGAGGTTTCGTAAGATTTGAAACATCCAATTCTTAGAAAA
TTGCTcagaaatactcaaaaaaggtgaaaagAGAGCATTTTAAAaatagg
cttaaaactcaaaagtgaagaacatcagaaggctttaaaaattgatgttc
ttataaaagaaattgcATGCTATCATGCTTTTCTTTCAAACTTTAGCTTT
GTGACTGGGTATATGACGGATAGCATTGGGCATCGTGCGACGTTAATGAT
CTTATGTACTGGCATCACCATCAGTACCTTCTTTTTCGCATTTACGAATT
CTTATGAATGGGCTATCGTTTGTCGCACTATACAAGGAACCTGGCTGTGT
GCATACATTACTGTTAAGGTGAATATTGTGTTTCAACCCTGTCCCTCACG
Ggagggacctaattgccggggggttggaattactgctgaaaatccaaaaa
taaggtaaatataggctaaaatcaggatATTTCGAGCGAAATAAGGGACC
TTCTTTTTGACggctaaaaatattcttagaaaTTAATAAGctgggggggg
gtcctaataaggtccggtgGGGGTCGGAAAATTTTCAAGCAATTAATAAG
CGGGAGGCCCCTTTATTTCGAACCTAAGAGTGCAAAACTTTGAACTGGTC
GTATACACTTTAGGGAGTACTTTCATACACTTGTGACGAAACAAATGCCA
GTGACGCAATCACATGGATGTCTGCTTCAAAGACTCTTGCCATGGTTACA
GGGCAAACTTTAGGAGGTAAAGATACTGTTTTAACTTTAactttcaaaga
ctttaaaCTATGATAAAAGCTTTTAACTTGAAAGTTAGACAATAGCTTTG
GTTCCATTAGAAagacatttttaaatttttcaatctttttaatCAAGTGG
TCTTGAATTATAGCCTTAAGTCTGGGACTTGATATATTGGCTGATTTTGA
ATGTACATACACGTCATTTAGGTCAAATAGaccctttaaaaatatttttg
gtgctGAAGACAATTACTATTGCCCTTCAATTATGATTTTTAGTCATTAT
TGGCGGTTCGGAGtaatttgaaagaaagaaatctatgtttagatttagat
ttattCGTCtggtaaaaatgaaattttccttgtaaattcattaaCAGTTC
GCTCAAAGGCCGACTGCACTATCAAATAaacagattttaaacccattttt
AAGAGCACCGTAAAAACATTTAAACcttaaaacttcaaaaaattaagaac
agctcagcctgagccaaaatttactggttcttataacaAAAGTAAGTATA
TTACATTTTCACTTTCATAGTTTCGATATgtctttttttgtcttttagCA
TTTACAAGCTTTCCAGCTGAACAATATCCAAGTGTTTTTCCAAAAGGTAA
TCTCTGAATTTTCATTTCGATGGACTTTGGACTTGTTCCAAAAAGAGCGA
GTAATCAAAATTCTGACTAAATATATCAAAGTCCAGTTCTGAAAGTTCAA
AACACGGATTGTCTTTAAGAGAGATACATATCTGAGGCTCCAGCCGTAAT
GGGTGGTAGATGGAGAAAAACAGCGGTAAAGTTTGGAAGAAGCTGTAAAA
AACTCAGGAGCTGTTTACTCCACCCCAGGGTTGATCTACCTCCTAAATTA
TTCCCCCTTTTTAGTGACCTTGCGTagagacgataggatcgtcaaCCTTT
TCAAATATCATTTCGGttattcccagctggcacacaacgttgtttatgga
cgttgtgaatgtcagaaaaacgttgaaacgcTGGGTTCATATTCTCtgtt
ttttgtctattttgttCAGATTCCATTTTCGGTCATTATAAAATCTTGAT
ACCAAATATGGTCATTGCACTTGGAATGTTAATGACAACCATATCTATTT
GGAACATCATTTATTCAAAATCGAAACAGAGAGAAATGTAAGTTCATGAA
ACTGTGACTTTGCGTAATGTCGACAAACGTTGTCTAATTTcgtcatagca
actatctggtctgcaaagtagTTAGAGTACTAATCTTTTTAAACAGCTCA
CTTCAGaatgttttatttataaacatttaaaagactAGATAGTTGCTATG
GTGGAATTATACAGGATACTATAGTTATATGGGTGTttaagcatagtata
agaaagccgcggctggaatgataacatctgaatttctgttgttctatctc
tgtcgtatttgatgactatttgttgatcaagaaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNgaaatctttttagaaatcaatgaaatagtacat
caagataatactgtgaaaatttcaagccagcaccttcaaaatttatcatt
caaactgacaggaaagttgtgaTCGTGAATatatttcttataattttaat
tttggcgatagactatcgtttccacaaaatacccctaaaatatgtctaAA
ATCAGTTCAAGTTTTCTATTGTACAGATTCAAAAatatctagcaataaaa
aaccttttgtgaaggaaaataagaaaaaatttcaaaaactatctaccaat
aataaactgacaatcttgatgttcttataaagctcggagacagagataga
acagcaattaactgaaaagacaatgcagtacatattccagccgcggcttt
cttatactatggtttaAGGTtatacgataattgttacgggaaAATATCAT
TTGTATAACGTACAATTGGTCctttccattattttttgcttaattAAACA
TCAAATTGGACTTTGTTAGTGTAAATTTAAGTATGTTAGGGGATTCGCTG
CATCGAAAGGGGGTTTAAAGGAATTTTCATTTGCGTGTCCAATTTCCGTC
GTTTGGTCAACGAATATGCCAGTCTTAAATCCTATTATATCTAACCCACA
GActtttatataccctggaccaagctatatccatcATTCTTTGACCGGAG
TTTTCTTTAAAGTGCAGCTGTTAATAATTAATGTTTAACGGCGctaaatc
atcaaaagtattgaggaaaagtagatctagcgctctcgatgcatttacac
cgctattgagtagtactactattagggtaccactttcaaaaaaattccga
TGACCAGGATTGAGAAACTTAGTCCATAGTATATAAAGATCAGTGATCTA
ACCTTCCCATTAAGATTGAGAAATGGAATCACGCTAACTATAATTTCGAT
TCTTGGGCGcttccaaaaaatttgaatatggaggCTGGAGGatataaatt
tttatccccttacattgtgacttttgaccccctcCCCAGACAACATGTCT
CACCCcttggacaagcatcagttgaacCCCGGACACTCGAAATTGTCCCT
aaaacagagcaagtttgcccCTAAGTCAATTTctgcagatttttcactac
tcCCACTACATATCCAATATATTCTCCAATAGCAGGGGCTCTTTCAGAAA
ATTTTCgtaaagagggggggggggctttacgaaatttttttggaagagct
cctgctaaaaataggctaaaaatattattttctgtATATACAGTTGCTCC
TAAAGAGTTGGGACTTTCCAAATATTTGATATTCCCTCCCTCTTGCCGTA
CACCCAGTGAACAATAGTAATGACACCATTCAAACAATATACTGGCTAAA
CTCCATTCTCctccttcactgcgtacgttcTAAATGGATGGCGGCTTCTT
CCAAAACATCATATTTTCTTTTCAGTctcgaaaagaaaaatgtattgTTG
CAGCAGGAAAAAGACTCTCGAAGTGACGAATCATTGGTAGTTAGATACAT
CAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011154XLOC_011154Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019830-exon-sc0000338-1491911889:261734..261818TCONS_00019830-exon-sc0000338-1491911889:261734..261818Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1510915933:261734..261818TCONS_00019830-exon-sc0000338-1510915933:261734..261818Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1575043694:261734..261818TCONS_00019830-exon-sc0000338-1575043694:261734..261818Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1491911889:262828..262839TCONS_00019830-exon-sc0000338-1491911889:262828..262839Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1510915933:262828..262839TCONS_00019830-exon-sc0000338-1510915933:262828..262839Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1575043694:262828..262839TCONS_00019830-exon-sc0000338-1575043694:262828..262839Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1491911889:262936..262978TCONS_00019830-exon-sc0000338-1491911889:262936..262978Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1510915933:262936..262978TCONS_00019830-exon-sc0000338-1510915933:262936..262978Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1575043694:262936..262978TCONS_00019830-exon-sc0000338-1575043694:262936..262978Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1491911889:264180..264351TCONS_00019830-exon-sc0000338-1491911889:264180..264351Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1510915933:264180..264351TCONS_00019830-exon-sc0000338-1510915933:264180..264351Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1575043694:264180..264351TCONS_00019830-exon-sc0000338-1575043694:264180..264351Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1491911889:264647..264749TCONS_00019830-exon-sc0000338-1491911889:264647..264749Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1510915933:264647..264749TCONS_00019830-exon-sc0000338-1510915933:264647..264749Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1575043694:264647..264749TCONS_00019830-exon-sc0000338-1575043694:264647..264749Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1491911889:265332..265379TCONS_00019830-exon-sc0000338-1491911889:265332..265379Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1510915933:265332..265379TCONS_00019830-exon-sc0000338-1510915933:265332..265379Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1575043694:265332..265379TCONS_00019830-exon-sc0000338-1575043694:265332..265379Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1491911889:265803..265920TCONS_00019830-exon-sc0000338-1491911889:265803..265920Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1510915933:265803..265920TCONS_00019830-exon-sc0000338-1510915933:265803..265920Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1575043694:265803..265920TCONS_00019830-exon-sc0000338-1575043694:265803..265920Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1491911889:268359..268438TCONS_00019830-exon-sc0000338-1491911889:268359..268438Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1510915933:268359..268438TCONS_00019830-exon-sc0000338-1510915933:268359..268438Clytia hemisphaericaexon
TCONS_00019830-exon-sc0000338-1575043694:268359..268438TCONS_00019830-exon-sc0000338-1575043694:268359..268438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:261734..268438 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.91984	6.83479	2.08248	1.26039	1.52344	0.368482	6.66779	0	16.3565	20.4499	27.8163	15.0974	3.15929	3.34271	1.1075	3.43346	7.97932	8.26186	0.135069	0.482802	18.4373	6.37989	3.98752	5.12884	0	1.35534	0	0.0886432	0.473357	1.04636
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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