TCONS_00019831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019831
Unique NameTCONS_00019831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019831 ID=TCONS_00019831|Name=TCONS_00019831|organism=Clytia hemisphaerica|type=transcript|length=566bp
AGGTATTCTCGTATCTTGCATGTATATTGGTCGTACTGTGATGAGCTTTG
TGACTGGGTATATGACGGATAGCATTGGGCATCGTGCGACGTTAATGATC
TTATGTACTGGCATCACCATCAGTACCTTCTTTTTCGCATTTACGAATTC
TTATGAATGGGCTATCGTTTGTCGCACTATACAAGGAACCTGGCTGTGTG
CATACATTACTGTTAAGGGAGTACTTTCATACACTTGTGACGAAACAAAT
GCCAGTGACGCAATCACATGGATGTCTGCTTCAAAGACTCTTGCCATGGT
TACAGGGCAAACTTTAGGAGCATTTACAAGCTTTCCAGCTGAACAATATC
CAAGTGTTTTTCCAAAAGATTCCATTTTCGGTCATTATAAAATCTTGATA
CCAAATATGGTCATTGCACTTGGAATGTTAATGACAACCATATCTATTTG
GAACATCATTTATTCAAAATCGAAACAGAGAGAAATTctcgaaaagaaaa
atgtattgTTGCAGCAGGAAAAAGACTCTCGAAGTGACGAATCATTGGTA
GTTAGATACATCAAGC
Run BLAST on NCBI

transcript from alignment at sc0000338:262982..268438+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019831 ID=TCONS_00019831|Name=TCONS_00019831|organism=Clytia hemisphaerica|type=transcript|length=5457bp|location=Sequence derived from alignment at sc0000338:262982..268438+ (Clytia hemisphaerica)
AGGTATTCTCGTATCTTGCATGTATATTGGTCGTACTGTGATGAGGTAAG
GTATTCTCGTATCATGCATGTATATTGGTCGTACTGTGATGAGGTAAGGA
CTGTTTCTCCGTGAAAAAATGTATAAGAACAAATATGACTAAAATATtaa
acatccctgtctcatagccccagtggaactttttttttctgtGGGGATAA
GCGATAATGGGGATAAAAGCTCTATTGCTCCatccaaggttaaaaaaact
cagtggggatggtttcggAGTGCAacttttaaacatggaatttcgagtga
GAATACAATCagagtcaatttcccagtggggctgaaattcaagggtattt
tcccaccggggacgagaaaattttgctcaattttccagtggggctggggt
cccgcaaactttttttccgtcagcgaacgcagacctgatttagcggtcga
agacctgaattaacggccgaagacctgatttaACGGCCGAACCTGATTTA
ACAAGTCACCGGTCGAATACCTGATAGATAAGTTAGGGTCAGTTAAACTA
GTTAAAGTAGCTTGAACCACTCGGCAAGGCATCAGTGGCGATGGCCCAGT
GCGTGGTTAGTGCAGTGATATCGAAGACGAAAGATGGGTGGTATCGAAGA
CGAAAGATAGGTAGTTCGAGACGAGTTATTGGcattaattttcattcttt
ttaatttaaaatcttttaatttaatttgttttcaatactatttcccattg
aaacatcatataaaaatcttgattgaatTTATAAAAGAGATTTATAGCAA
ATTTCCACAATTCATTTTctccaggtcttcggccgttaaaaAAGTATTCG
ACCACTGCACCAAGTCTTCGGtttttaattcaggtcttcggtcgctaaat
caggtctgcgACCGCTAATTCAGGTCTGCGTCCGCTGacgaaacaaaaat
ctgctggggtcccagcgggtctatgacacaggggtgttattaaCAATAAA
ATGAGAGCATTTTGAGGTTTCGTAAGATTTGAAACATCCAATTCTTAGAA
AATTGCTcagaaatactcaaaaaaggtgaaaagAGAGCATTTTAAAaata
ggcttaaaactcaaaagtgaagaacatcagaaggctttaaaaattgatgt
tcttataaaagaaattgcATGCTATCATGCTTTTCTTTCAAACTTTAGCT
TTGTGACTGGGTATATGACGGATAGCATTGGGCATCGTGCGACGTTAATG
ATCTTATGTACTGGCATCACCATCAGTACCTTCTTTTTCGCATTTACGAA
TTCTTATGAATGGGCTATCGTTTGTCGCACTATACAAGGAACCTGGCTGT
GTGCATACATTACTGTTAAGGTGAATATTGTGTTTCAACCCTGTCCCTCA
CGGgagggacctaattgccggggggttggaattactgctgaaaatccaaa
aataaggtaaatataggctaaaatcaggatATTTCGAGCGAAATAAGGGA
CCTTCTTTTTGACggctaaaaatattcttagaaaTTAATAAGctgggggg
gggtcctaataaggtccggtgGGGGTCGGAAAATTTTCAAGCAATTAATA
AGCGGGAGGCCCCTTTATTTCGAACCTAAGAGTGCAAAACTTTGAACTGG
TCGTATACACTTTAGGGAGTACTTTCATACACTTGTGACGAAACAAATGC
CAGTGACGCAATCACATGGATGTCTGCTTCAAAGACTCTTGCCATGGTTA
CAGGGCAAACTTTAGGAGGTAAAGATACTGTTTTAACTTTAactttcaaa
gactttaaaCTATGATAAAAGCTTTTAACTTGAAAGTTAGACAATAGCTT
TGGTTCCATTAGAAagacatttttaaatttttcaatctttttaatCAAGT
GGTCTTGAATTATAGCCTTAAGTCTGGGACTTGATATATTGGCTGATTTT
GAATGTACATACACGTCATTTAGGTCAAATAGaccctttaaaaatatttt
tggtgctGAAGACAATTACTATTGCCCTTCAATTATGATTTTTAGTCATT
ATTGGCGGTTCGGAGtaatttgaaagaaagaaatctatgtttagatttag
atttattCGTCtggtaaaaatgaaattttccttgtaaattcattaaCAGT
TCGCTCAAAGGCCGACTGCACTATCAAATAaacagattttaaacccattt
ttAAGAGCACCGTAAAAACATTTAAACcttaaaacttcaaaaaattaaga
acagctcagcctgagccaaaatttactggttcttataacaAAAGTAAGTA
TATTACATTTTCACTTTCATAGTTTCGATATgtctttttttgtcttttag
CATTTACAAGCTTTCCAGCTGAACAATATCCAAGTGTTTTTCCAAAAGGT
AATCTCTGAATTTTCATTTCGATGGACTTTGGACTTGTTCCAAAAAGAGC
GAGTAATCAAAATTCTGACTAAATATATCAAAGTCCAGTTCTGAAAGTTC
AAAACACGGATTGTCTTTAAGAGAGATACATATCTGAGGCTCCAGCCGTA
ATGGGTGGTAGATGGAGAAAAACAGCGGTAAAGTTTGGAAGAAGCTGTAA
AAAACTCAGGAGCTGTTTACTCCACCCCAGGGTTGATCTACCTCCTAAAT
TATTCCCCCTTTTTAGTGACCTTGCGTagagacgataggatcgtcaaCCT
TTTCAAATATCATTTCGGttattcccagctggcacacaacgttgtttatg
gacgttgtgaatgtcagaaaaacgttgaaacgcTGGGTTCATATTCTCtg
ttttttgtctattttgttCAGATTCCATTTTCGGTCATTATAAAATCTTG
ATACCAAATATGGTCATTGCACTTGGAATGTTAATGACAACCATATCTAT
TTGGAACATCATTTATTCAAAATCGAAACAGAGAGAAATGTAAGTTCATG
AAACTGTGACTTTGCGTAATGTCGACAAACGTTGTCTAATTTcgtcatag
caactatctggtctgcaaagtagTTAGAGTACTAATCTTTTTAAACAGCT
CACTTCAGaatgttttatttataaacatttaaaagactAGATAGTTGCTA
TGGTGGAATTATACAGGATACTATAGTTATATGGGTGTttaagcatagta
taagaaagccgcggctggaatgataacatctgaatttctgttgttctatc
tctgtcgtatttgatgactatttgttgatcaagaaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNgaaatctttttagaaatcaatgaaatagtac
atcaagataatactgtgaaaatttcaagccagcaccttcaaaatttatca
ttcaaactgacaggaaagttgtgaTCGTGAATatatttcttataatttta
attttggcgatagactatcgtttccacaaaatacccctaaaatatgtcta
AAATCAGTTCAAGTTTTCTATTGTACAGATTCAAAAatatctagcaataa
aaaaccttttgtgaaggaaaataagaaaaaatttcaaaaactatctacca
ataataaactgacaatcttgatgttcttataaagctcggagacagagata
gaacagcaattaactgaaaagacaatgcagtacatattccagccgcggct
ttcttatactatggtttaAGGTtatacgataattgttacgggaaAATATC
ATTTGTATAACGTACAATTGGTCctttccattattttttgcttaattAAA
CATCAAATTGGACTTTGTTAGTGTAAATTTAAGTATGTTAGGGGATTCGC
TGCATCGAAAGGGGGTTTAAAGGAATTTTCATTTGCGTGTCCAATTTCCG
TCGTTTGGTCAACGAATATGCCAGTCTTAAATCCTATTATATCTAACCCA
CAGActtttatataccctggaccaagctatatccatcATTCTTTGACCGG
AGTTTTCTTTAAAGTGCAGCTGTTAATAATTAATGTTTAACGGCGctaaa
tcatcaaaagtattgaggaaaagtagatctagcgctctcgatgcatttac
accgctattgagtagtactactattagggtaccactttcaaaaaaattcc
gaTGACCAGGATTGAGAAACTTAGTCCATAGTATATAAAGATCAGTGATC
TAACCTTCCCATTAAGATTGAGAAATGGAATCACGCTAACTATAATTTCG
ATTCTTGGGCGcttccaaaaaatttgaatatggaggCTGGAGGatataaa
tttttatccccttacattgtgacttttgaccccctcCCCAGACAACATGT
CTCACCCcttggacaagcatcagttgaacCCCGGACACTCGAAATTGTCC
CTaaaacagagcaagtttgcccCTAAGTCAATTTctgcagatttttcact
actcCCACTACATATCCAATATATTCTCCAATAGCAGGGGCTCTTTCAGA
AAATTTTCgtaaagagggggggggggctttacgaaatttttttggaagag
ctcctgctaaaaataggctaaaaatattattttctgtATATACAGTTGCT
CCTAAAGAGTTGGGACTTTCCAAATATTTGATATTCCCTCCCTCTTGCCG
TACACCCAGTGAACAATAGTAATGACACCATTCAAACAATATACTGGCTA
AACTCCATTCTCctccttcactgcgtacgttcTAAATGGATGGCGGCTTC
TTCCAAAACATCATATTTTCTTTTCAGTctcgaaaagaaaaatgtattgT
TGCAGCAGGAAAAAGACTCTCGAAGTGACGAATCATTGGTAGTTAGATAC
ATCAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011154XLOC_011154Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019831-exon-sc0000338-1491911889:262982..263026TCONS_00019831-exon-sc0000338-1491911889:262982..263026Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1510915933:262982..263026TCONS_00019831-exon-sc0000338-1510915933:262982..263026Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1575043694:262982..263026TCONS_00019831-exon-sc0000338-1575043694:262982..263026Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1491911889:264180..264351TCONS_00019831-exon-sc0000338-1491911889:264180..264351Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1510915933:264180..264351TCONS_00019831-exon-sc0000338-1510915933:264180..264351Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1575043694:264180..264351TCONS_00019831-exon-sc0000338-1575043694:264180..264351Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1491911889:264647..264749TCONS_00019831-exon-sc0000338-1491911889:264647..264749Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1510915933:264647..264749TCONS_00019831-exon-sc0000338-1510915933:264647..264749Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1575043694:264647..264749TCONS_00019831-exon-sc0000338-1575043694:264647..264749Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1491911889:265332..265379TCONS_00019831-exon-sc0000338-1491911889:265332..265379Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1510915933:265332..265379TCONS_00019831-exon-sc0000338-1510915933:265332..265379Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1575043694:265332..265379TCONS_00019831-exon-sc0000338-1575043694:265332..265379Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1491911889:265803..265920TCONS_00019831-exon-sc0000338-1491911889:265803..265920Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1510915933:265803..265920TCONS_00019831-exon-sc0000338-1510915933:265803..265920Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1575043694:265803..265920TCONS_00019831-exon-sc0000338-1575043694:265803..265920Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1491911889:268359..268438TCONS_00019831-exon-sc0000338-1491911889:268359..268438Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1510915933:268359..268438TCONS_00019831-exon-sc0000338-1510915933:268359..268438Clytia hemisphaericaexon
TCONS_00019831-exon-sc0000338-1575043694:268359..268438TCONS_00019831-exon-sc0000338-1575043694:268359..268438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:262982..268438 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.76496	5.48915	2.82959	0.000319278	10.4194	7.38938	4.45834	10.7281	15.796	12.3224	0	9.61318	0.54555	8.47045e-10	1.48938	1.72623	0.803491	0	0	1.97322	10.281	20.1293	4.42583	4.21604	4.43278	3.27473	0	0	0	5.80333e-06
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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