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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019832 ID=TCONS_00019832|Name=TCONS_00019832|organism=Clytia hemisphaerica|type=transcript|length=554bp
TATTCTCGTATCTTGCATGTATATTGGTCGTACTGTGATGAGCTTTGTGA
CTGGGTATATGACGGATAGCATTGGGCATCGTGCGACGTTAATGATCTTA
TGTACTGGCATCACCATCAGTACCTTCTTTTTCGCATTTACGAATTCTTA
TGAATGGGCTATCGTTTGTCGCACTATACAAGGAACCTGGCTGTGTGCAT
ACATTACTGTTAAGGGAGTACTTTCATACACTTGTGACGAAACAAATGCC
AGTGACGCAATCACATGGATGTCTGCTTCAAAGACTCTTGCCATGGTTAC
AGGGCAAACTTTAGGAGCATTTACAAGCTTTCCAGCTGAACAATATCCAA
GTGTTTTTCCAAAAGATTCCATTTTCGGTCATTATAAAATCTTGATACCA
AATATGGTCATTGCACTTGGAATGTTAATGACAACCATATCTATTTGGAA
CATCATTTATTCAAAATCGAAACAGAGAGAAATTCTCGAAAAGAAAGATG
TATTGTTGCAGCAGGAAAAAGACTCTCAAAGTGACGAATCATTGATAATT
AGAT Run BLAST on NCBI transcript from alignment at sc0000338:262985..269708+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019832 ID=TCONS_00019832|Name=TCONS_00019832|organism=Clytia hemisphaerica|type=transcript|length=6724bp|location=Sequence derived from alignment at sc0000338:262985..269708+ (Clytia hemisphaerica)
TATTCTCGTATCTTGCATGTATATTGGTCGTACTGTGATGAGGTAAGGTA
TTCTCGTATCATGCATGTATATTGGTCGTACTGTGATGAGGTAAGGACTG
TTTCTCCGTGAAAAAATGTATAAGAACAAATATGACTAAAATATtaaaca
tccctgtctcatagccccagtggaactttttttttctgtGGGGATAAGCG
ATAATGGGGATAAAAGCTCTATTGCTCCatccaaggttaaaaaaactcag
tggggatggtttcggAGTGCAacttttaaacatggaatttcgagtgaGAA
TACAATCagagtcaatttcccagtggggctgaaattcaagggtattttcc
caccggggacgagaaaattttgctcaattttccagtggggctggggtccc
gcaaactttttttccgtcagcgaacgcagacctgatttagcggtcgaaga
cctgaattaacggccgaagacctgatttaACGGCCGAACCTGATTTAACA
AGTCACCGGTCGAATACCTGATAGATAAGTTAGGGTCAGTTAAACTAGTT
AAAGTAGCTTGAACCACTCGGCAAGGCATCAGTGGCGATGGCCCAGTGCG
TGGTTAGTGCAGTGATATCGAAGACGAAAGATGGGTGGTATCGAAGACGA
AAGATAGGTAGTTCGAGACGAGTTATTGGcattaattttcattcttttta
atttaaaatcttttaatttaatttgttttcaatactatttcccattgaaa
catcatataaaaatcttgattgaatTTATAAAAGAGATTTATAGCAAATT
TCCACAATTCATTTTctccaggtcttcggccgttaaaaAAGTATTCGACC
ACTGCACCAAGTCTTCGGtttttaattcaggtcttcggtcgctaaatcag
gtctgcgACCGCTAATTCAGGTCTGCGTCCGCTGacgaaacaaaaatctg
ctggggtcccagcgggtctatgacacaggggtgttattaaCAATAAAATG
AGAGCATTTTGAGGTTTCGTAAGATTTGAAACATCCAATTCTTAGAAAAT
TGCTcagaaatactcaaaaaaggtgaaaagAGAGCATTTTAAAaataggc
ttaaaactcaaaagtgaagaacatcagaaggctttaaaaattgatgttct
tataaaagaaattgcATGCTATCATGCTTTTCTTTCAAACTTTAGCTTTG
TGACTGGGTATATGACGGATAGCATTGGGCATCGTGCGACGTTAATGATC
TTATGTACTGGCATCACCATCAGTACCTTCTTTTTCGCATTTACGAATTC
TTATGAATGGGCTATCGTTTGTCGCACTATACAAGGAACCTGGCTGTGTG
CATACATTACTGTTAAGGTGAATATTGTGTTTCAACCCTGTCCCTCACGG
gagggacctaattgccggggggttggaattactgctgaaaatccaaaaat
aaggtaaatataggctaaaatcaggatATTTCGAGCGAAATAAGGGACCT
TCTTTTTGACggctaaaaatattcttagaaaTTAATAAGctggggggggg
tcctaataaggtccggtgGGGGTCGGAAAATTTTCAAGCAATTAATAAGC
GGGAGGCCCCTTTATTTCGAACCTAAGAGTGCAAAACTTTGAACTGGTCG
TATACACTTTAGGGAGTACTTTCATACACTTGTGACGAAACAAATGCCAG
TGACGCAATCACATGGATGTCTGCTTCAAAGACTCTTGCCATGGTTACAG
GGCAAACTTTAGGAGGTAAAGATACTGTTTTAACTTTAactttcaaagac
tttaaaCTATGATAAAAGCTTTTAACTTGAAAGTTAGACAATAGCTTTGG
TTCCATTAGAAagacatttttaaatttttcaatctttttaatCAAGTGGT
CTTGAATTATAGCCTTAAGTCTGGGACTTGATATATTGGCTGATTTTGAA
TGTACATACACGTCATTTAGGTCAAATAGaccctttaaaaatatttttgg
tgctGAAGACAATTACTATTGCCCTTCAATTATGATTTTTAGTCATTATT
GGCGGTTCGGAGtaatttgaaagaaagaaatctatgtttagatttagatt
tattCGTCtggtaaaaatgaaattttccttgtaaattcattaaCAGTTCG
CTCAAAGGCCGACTGCACTATCAAATAaacagattttaaacccatttttA
AGAGCACCGTAAAAACATTTAAACcttaaaacttcaaaaaattaagaaca
gctcagcctgagccaaaatttactggttcttataacaAAAGTAAGTATAT
TACATTTTCACTTTCATAGTTTCGATATgtctttttttgtcttttagCAT
TTACAAGCTTTCCAGCTGAACAATATCCAAGTGTTTTTCCAAAAGGTAAT
CTCTGAATTTTCATTTCGATGGACTTTGGACTTGTTCCAAAAAGAGCGAG
TAATCAAAATTCTGACTAAATATATCAAAGTCCAGTTCTGAAAGTTCAAA
ACACGGATTGTCTTTAAGAGAGATACATATCTGAGGCTCCAGCCGTAATG
GGTGGTAGATGGAGAAAAACAGCGGTAAAGTTTGGAAGAAGCTGTAAAAA
ACTCAGGAGCTGTTTACTCCACCCCAGGGTTGATCTACCTCCTAAATTAT
TCCCCCTTTTTAGTGACCTTGCGTagagacgataggatcgtcaaCCTTTT
CAAATATCATTTCGGttattcccagctggcacacaacgttgtttatggac
gttgtgaatgtcagaaaaacgttgaaacgcTGGGTTCATATTCTCtgttt
tttgtctattttgttCAGATTCCATTTTCGGTCATTATAAAATCTTGATA
CCAAATATGGTCATTGCACTTGGAATGTTAATGACAACCATATCTATTTG
GAACATCATTTATTCAAAATCGAAACAGAGAGAAATGTAAGTTCATGAAA
CTGTGACTTTGCGTAATGTCGACAAACGTTGTCTAATTTcgtcatagcaa
ctatctggtctgcaaagtagTTAGAGTACTAATCTTTTTAAACAGCTCAC
TTCAGaatgttttatttataaacatttaaaagactAGATAGTTGCTATGG
TGGAATTATACAGGATACTATAGTTATATGGGTGTttaagcatagtataa
gaaagccgcggctggaatgataacatctgaatttctgttgttctatctct
gtcgtatttgatgactatttgttgatcaagaaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNgaaatctttttagaaatcaatgaaatagtacatc
aagataatactgtgaaaatttcaagccagcaccttcaaaatttatcattc
aaactgacaggaaagttgtgaTCGTGAATatatttcttataattttaatt
ttggcgatagactatcgtttccacaaaatacccctaaaatatgtctaAAA
TCAGTTCAAGTTTTCTATTGTACAGATTCAAAAatatctagcaataaaaa
accttttgtgaaggaaaataagaaaaaatttcaaaaactatctaccaata
ataaactgacaatcttgatgttcttataaagctcggagacagagatagaa
cagcaattaactgaaaagacaatgcagtacatattccagccgcggctttc
ttatactatggtttaAGGTtatacgataattgttacgggaaAATATCATT
TGTATAACGTACAATTGGTCctttccattattttttgcttaattAAACAT
CAAATTGGACTTTGTTAGTGTAAATTTAAGTATGTTAGGGGATTCGCTGC
ATCGAAAGGGGGTTTAAAGGAATTTTCATTTGCGTGTCCAATTTCCGTCG
TTTGGTCAACGAATATGCCAGTCTTAAATCCTATTATATCTAACCCACAG
ActtttatataccctggaccaagctatatccatcATTCTTTGACCGGAGT
TTTCTTTAAAGTGCAGCTGTTAATAATTAATGTTTAACGGCGctaaatca
tcaaaagtattgaggaaaagtagatctagcgctctcgatgcatttacacc
gctattgagtagtactactattagggtaccactttcaaaaaaattccgaT
GACCAGGATTGAGAAACTTAGTCCATAGTATATAAAGATCAGTGATCTAA
CCTTCCCATTAAGATTGAGAAATGGAATCACGCTAACTATAATTTCGATT
CTTGGGCGcttccaaaaaatttgaatatggaggCTGGAGGatataaattt
ttatccccttacattgtgacttttgaccccctcCCCAGACAACATGTCTC
ACCCcttggacaagcatcagttgaacCCCGGACACTCGAAATTGTCCCTa
aaacagagcaagtttgcccCTAAGTCAATTTctgcagatttttcactact
cCCACTACATATCCAATATATTCTCCAATAGCAGGGGCTCTTTCAGAAAA
TTTTCgtaaagagggggggggggctttacgaaatttttttggaagagctc
ctgctaaaaataggctaaaaatattattttctgtATATACAGTTGCTCCT
AAAGAGTTGGGACTTTCCAAATATTTGATATTCCCTCCCTCTTGCCGTAC
ACCCAGTGAACAATAGTAATGACACCATTCAAACAATATACTGGCTAAAC
TCCATTCTCctccttcactgcgtacgttcTAAATGGATGGCGGCTTCTTC
CAAAACATCATATTTTCTTTTCAGTctcgaaaagaaaaatgtattgTTGC
AGCAGGAAAAAGACTCTCGAAGTGACGAATCATTGGTAGTTAGATACATC
AAGCTTTTaaagtaattctttttttttttttttataaattcctttgaaat
ttttagacTCGAGAAAAGTATTTTACGGACCGGCCCAAAATTTCCCTTTT
TACCTATTCAGCCCTAGATTACTGTAACTGGTGATTAgaaaatgctattg
acttgaaattttgaaatagtgTCATATAGTGATAATACAACGTGGCAATC
GAGCggttatgctgaaagtgagcattttaggtaaaaaaaggaccggtctg
taaaataccaaccacaACAACCNtagttccaatcttgttcaaatttacaa
atgagctgcattttagtctccattgccatattccatttaatcggtatttg
aaatataaattcCGTGTTGtctgttgagtttgaaaaatcaagccaccaat
tcgttaaacgagacagatctagaaataaccattttcacacgtagtatcat
tgaaaaagttccaatcttgttatANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTACGGGAAAATATCATTTGTATAACGTACAATTGGTCctttcc
attattttttgcttaattAAACATCAAATTGGACTTTGTTAGTGTAAATT
TAAGTATGTTAGGGGATTCGCTGCATCGAAAGGGGGTTTAAAGGAATTTT
CATTTGCGTGTCCAATTTCCGTCGTTTGGTCAACGAATATGCCAGTCTTA
AATCCTATTATATCTAACCCAcagacctttatataccctggaccaagcta
tatctatCATTTTTTGACAGGAGTTTTCTTTAAAGTGCAGCTGTTAATAA
ATTAATGTTAAACGGCGctaaatcatcaaaagtatttgaggaaaagtaaa
tctagcgctctcgatgcatttacaccgctattgagtagtactactattag
ggtaccactttcaaaaaaattccgaTGGCCAGGATTGAGAAAATTAGTCC
AgagtatataaaggtcagtgatctAACCTCCCCATTAAGATTGAAAAATG
GAATCACGGTAACTATAATTTCGATTCTTGGGcgtttccagaaaaaattt
gaatatggaggCTGGAGGATATAAAAGTCTTTGGAAATTTACTAGTAATG
ACACCATTCAAACAATATACTGGCTAAACTCCATTCTCctccttcactgc
gtacgttcTAAATGGATGGCGGCTTCTTCCAAAACATCATATTTTCTTTT
CAGTCTCGAAAAGAAAGATGTATTGTTGCAGCAGGAAAAAGACTCTCAAA
GTGACGAATCATTGATAATTAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019832-exon-sc0000338-1491911889:262985..263026 | TCONS_00019832-exon-sc0000338-1491911889:262985..263026 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1510915933:262985..263026 | TCONS_00019832-exon-sc0000338-1510915933:262985..263026 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1575043694:262985..263026 | TCONS_00019832-exon-sc0000338-1575043694:262985..263026 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1491911889:264180..264351 | TCONS_00019832-exon-sc0000338-1491911889:264180..264351 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1510915933:264180..264351 | TCONS_00019832-exon-sc0000338-1510915933:264180..264351 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1575043694:264180..264351 | TCONS_00019832-exon-sc0000338-1575043694:264180..264351 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1491911889:264647..264749 | TCONS_00019832-exon-sc0000338-1491911889:264647..264749 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1510915933:264647..264749 | TCONS_00019832-exon-sc0000338-1510915933:264647..264749 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1575043694:264647..264749 | TCONS_00019832-exon-sc0000338-1575043694:264647..264749 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1491911889:265332..265379 | TCONS_00019832-exon-sc0000338-1491911889:265332..265379 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1510915933:265332..265379 | TCONS_00019832-exon-sc0000338-1510915933:265332..265379 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1575043694:265332..265379 | TCONS_00019832-exon-sc0000338-1575043694:265332..265379 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1491911889:265803..265920 | TCONS_00019832-exon-sc0000338-1491911889:265803..265920 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1510915933:265803..265920 | TCONS_00019832-exon-sc0000338-1510915933:265803..265920 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1575043694:265803..265920 | TCONS_00019832-exon-sc0000338-1575043694:265803..265920 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1491911889:269638..269708 | TCONS_00019832-exon-sc0000338-1491911889:269638..269708 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1510915933:269638..269708 | TCONS_00019832-exon-sc0000338-1510915933:269638..269708 | Clytia hemisphaerica | exon |
| TCONS_00019832-exon-sc0000338-1575043694:269638..269708 | TCONS_00019832-exon-sc0000338-1575043694:269638..269708 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000338 | supercontig | sc0000338:262985..269708 + |
Blast
The following BLAST results are available for this feature:
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