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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019834 ID=TCONS_00019834|Name=TCONS_00019834|organism=Clytia hemisphaerica|type=transcript|length=541bp
TGCATGTATATTGGTCGTACTGTGATGAGCTTTGTGACTGGGTATATGAC
GGATAGCATTGGGCATCGTGCGACGTTAATGATCTTATGTACTGGCATCA
CCATCAGTACCTTCTTTTTCGCATTTACGAATTCTTATGAATGGGCTATC
GTTTGTCGCACTATACAAGGAACCTGGCTGTGTGCATACATTACTGTTAA
GGGAGTACTTTCATACACTTGTGACGAAACAAATGCCAGTGACGCAATCA
CATGGATGTCTGCTTCAAAGACTCTTGCCATGGTTACAGGGCAAACTTTA
GGAGCATTTACAAGCTTTCCAGCTGAACAATATCCAAGTGTTTTTCCAAA
AGATTCCATTTTCGGTCATTATAAAATCTTGATACCAAATATGGTCATTG
CACTTGGAATGTTAATGACAACCATATCTATTTGGAACATCATTTATTCA
AAATCGAAACAGAGAGAAATTCTCGAAAAGAAAGATGTATTGTTGCAGCA
GGAAAAAGACTCTCAAAGTGACGAATCATTGATAATTAGAT Run BLAST on NCBI transcript from alignment at sc0000338:263046..269708+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019834 ID=TCONS_00019834|Name=TCONS_00019834|organism=Clytia hemisphaerica|type=transcript|length=6663bp|location=Sequence derived from alignment at sc0000338:263046..269708+ (Clytia hemisphaerica)
TGCATGTATATTGGTCGTACTGTGATGAGGTAAGGACTGTTTCTCCGTGA
AAAAATGTATAAGAACAAATATGACTAAAATATtaaacatccctgtctca
tagccccagtggaactttttttttctgtGGGGATAAGCGATAATGGGGAT
AAAAGCTCTATTGCTCCatccaaggttaaaaaaactcagtggggatggtt
tcggAGTGCAacttttaaacatggaatttcgagtgaGAATACAATCagag
tcaatttcccagtggggctgaaattcaagggtattttcccaccggggacg
agaaaattttgctcaattttccagtggggctggggtcccgcaaacttttt
ttccgtcagcgaacgcagacctgatttagcggtcgaagacctgaattaac
ggccgaagacctgatttaACGGCCGAACCTGATTTAACAAGTCACCGGTC
GAATACCTGATAGATAAGTTAGGGTCAGTTAAACTAGTTAAAGTAGCTTG
AACCACTCGGCAAGGCATCAGTGGCGATGGCCCAGTGCGTGGTTAGTGCA
GTGATATCGAAGACGAAAGATGGGTGGTATCGAAGACGAAAGATAGGTAG
TTCGAGACGAGTTATTGGcattaattttcattctttttaatttaaaatct
tttaatttaatttgttttcaatactatttcccattgaaacatcatataaa
aatcttgattgaatTTATAAAAGAGATTTATAGCAAATTTCCACAATTCA
TTTTctccaggtcttcggccgttaaaaAAGTATTCGACCACTGCACCAAG
TCTTCGGtttttaattcaggtcttcggtcgctaaatcaggtctgcgACCG
CTAATTCAGGTCTGCGTCCGCTGacgaaacaaaaatctgctggggtccca
gcgggtctatgacacaggggtgttattaaCAATAAAATGAGAGCATTTTG
AGGTTTCGTAAGATTTGAAACATCCAATTCTTAGAAAATTGCTcagaaat
actcaaaaaaggtgaaaagAGAGCATTTTAAAaataggcttaaaactcaa
aagtgaagaacatcagaaggctttaaaaattgatgttcttataaaagaaa
ttgcATGCTATCATGCTTTTCTTTCAAACTTTAGCTTTGTGACTGGGTAT
ATGACGGATAGCATTGGGCATCGTGCGACGTTAATGATCTTATGTACTGG
CATCACCATCAGTACCTTCTTTTTCGCATTTACGAATTCTTATGAATGGG
CTATCGTTTGTCGCACTATACAAGGAACCTGGCTGTGTGCATACATTACT
GTTAAGGTGAATATTGTGTTTCAACCCTGTCCCTCACGGgagggacctaa
ttgccggggggttggaattactgctgaaaatccaaaaataaggtaaatat
aggctaaaatcaggatATTTCGAGCGAAATAAGGGACCTTCTTTTTGACg
gctaaaaatattcttagaaaTTAATAAGctgggggggggtcctaataagg
tccggtgGGGGTCGGAAAATTTTCAAGCAATTAATAAGCGGGAGGCCCCT
TTATTTCGAACCTAAGAGTGCAAAACTTTGAACTGGTCGTATACACTTTA
GGGAGTACTTTCATACACTTGTGACGAAACAAATGCCAGTGACGCAATCA
CATGGATGTCTGCTTCAAAGACTCTTGCCATGGTTACAGGGCAAACTTTA
GGAGGTAAAGATACTGTTTTAACTTTAactttcaaagactttaaaCTATG
ATAAAAGCTTTTAACTTGAAAGTTAGACAATAGCTTTGGTTCCATTAGAA
agacatttttaaatttttcaatctttttaatCAAGTGGTCTTGAATTATA
GCCTTAAGTCTGGGACTTGATATATTGGCTGATTTTGAATGTACATACAC
GTCATTTAGGTCAAATAGaccctttaaaaatatttttggtgctGAAGACA
ATTACTATTGCCCTTCAATTATGATTTTTAGTCATTATTGGCGGTTCGGA
GtaatttgaaagaaagaaatctatgtttagatttagatttattCGTCtgg
taaaaatgaaattttccttgtaaattcattaaCAGTTCGCTCAAAGGCCG
ACTGCACTATCAAATAaacagattttaaacccatttttAAGAGCACCGTA
AAAACATTTAAACcttaaaacttcaaaaaattaagaacagctcagcctga
gccaaaatttactggttcttataacaAAAGTAAGTATATTACATTTTCAC
TTTCATAGTTTCGATATgtctttttttgtcttttagCATTTACAAGCTTT
CCAGCTGAACAATATCCAAGTGTTTTTCCAAAAGGTAATCTCTGAATTTT
CATTTCGATGGACTTTGGACTTGTTCCAAAAAGAGCGAGTAATCAAAATT
CTGACTAAATATATCAAAGTCCAGTTCTGAAAGTTCAAAACACGGATTGT
CTTTAAGAGAGATACATATCTGAGGCTCCAGCCGTAATGGGTGGTAGATG
GAGAAAAACAGCGGTAAAGTTTGGAAGAAGCTGTAAAAAACTCAGGAGCT
GTTTACTCCACCCCAGGGTTGATCTACCTCCTAAATTATTCCCCCTTTTT
AGTGACCTTGCGTagagacgataggatcgtcaaCCTTTTCAAATATCATT
TCGGttattcccagctggcacacaacgttgtttatggacgttgtgaatgt
cagaaaaacgttgaaacgcTGGGTTCATATTCTCtgttttttgtctattt
tgttCAGATTCCATTTTCGGTCATTATAAAATCTTGATACCAAATATGGT
CATTGCACTTGGAATGTTAATGACAACCATATCTATTTGGAACATCATTT
ATTCAAAATCGAAACAGAGAGAAATGTAAGTTCATGAAACTGTGACTTTG
CGTAATGTCGACAAACGTTGTCTAATTTcgtcatagcaactatctggtct
gcaaagtagTTAGAGTACTAATCTTTTTAAACAGCTCACTTCAGaatgtt
ttatttataaacatttaaaagactAGATAGTTGCTATGGTGGAATTATAC
AGGATACTATAGTTATATGGGTGTttaagcatagtataagaaagccgcgg
ctggaatgataacatctgaatttctgttgttctatctctgtcgtatttga
tgactatttgttgatcaagaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNgaaatctttttagaaatcaatgaaatagtacatcaagataatact
gtgaaaatttcaagccagcaccttcaaaatttatcattcaaactgacagg
aaagttgtgaTCGTGAATatatttcttataattttaattttggcgataga
ctatcgtttccacaaaatacccctaaaatatgtctaAAATCAGTTCAAGT
TTTCTATTGTACAGATTCAAAAatatctagcaataaaaaaccttttgtga
aggaaaataagaaaaaatttcaaaaactatctaccaataataaactgaca
atcttgatgttcttataaagctcggagacagagatagaacagcaattaac
tgaaaagacaatgcagtacatattccagccgcggctttcttatactatgg
tttaAGGTtatacgataattgttacgggaaAATATCATTTGTATAACGTA
CAATTGGTCctttccattattttttgcttaattAAACATCAAATTGGACT
TTGTTAGTGTAAATTTAAGTATGTTAGGGGATTCGCTGCATCGAAAGGGG
GTTTAAAGGAATTTTCATTTGCGTGTCCAATTTCCGTCGTTTGGTCAACG
AATATGCCAGTCTTAAATCCTATTATATCTAACCCACAGActtttatata
ccctggaccaagctatatccatcATTCTTTGACCGGAGTTTTCTTTAAAG
TGCAGCTGTTAATAATTAATGTTTAACGGCGctaaatcatcaaaagtatt
gaggaaaagtagatctagcgctctcgatgcatttacaccgctattgagta
gtactactattagggtaccactttcaaaaaaattccgaTGACCAGGATTG
AGAAACTTAGTCCATAGTATATAAAGATCAGTGATCTAACCTTCCCATTA
AGATTGAGAAATGGAATCACGCTAACTATAATTTCGATTCTTGGGCGctt
ccaaaaaatttgaatatggaggCTGGAGGatataaatttttatcccctta
cattgtgacttttgaccccctcCCCAGACAACATGTCTCACCCcttggac
aagcatcagttgaacCCCGGACACTCGAAATTGTCCCTaaaacagagcaa
gtttgcccCTAAGTCAATTTctgcagatttttcactactcCCACTACATA
TCCAATATATTCTCCAATAGCAGGGGCTCTTTCAGAAAATTTTCgtaaag
agggggggggggctttacgaaatttttttggaagagctcctgctaaaaat
aggctaaaaatattattttctgtATATACAGTTGCTCCTAAAGAGTTGGG
ACTTTCCAAATATTTGATATTCCCTCCCTCTTGCCGTACACCCAGTGAAC
AATAGTAATGACACCATTCAAACAATATACTGGCTAAACTCCATTCTCct
ccttcactgcgtacgttcTAAATGGATGGCGGCTTCTTCCAAAACATCAT
ATTTTCTTTTCAGTctcgaaaagaaaaatgtattgTTGCAGCAGGAAAAA
GACTCTCGAAGTGACGAATCATTGGTAGTTAGATACATCAAGCTTTTaaa
gtaattctttttttttttttttataaattcctttgaaatttttagacTCG
AGAAAAGTATTTTACGGACCGGCCCAAAATTTCCCTTTTTACCTATTCAG
CCCTAGATTACTGTAACTGGTGATTAgaaaatgctattgacttgaaattt
tgaaatagtgTCATATAGTGATAATACAACGTGGCAATCGAGCggttatg
ctgaaagtgagcattttaggtaaaaaaaggaccggtctgtaaaataccaa
ccacaACAACCNtagttccaatcttgttcaaatttacaaatgagctgcat
tttagtctccattgccatattccatttaatcggtatttgaaatataaatt
cCGTGTTGtctgttgagtttgaaaaatcaagccaccaattcgttaaacga
gacagatctagaaataaccattttcacacgtagtatcattgaaaaagttc
caatcttgttatANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACG
GGAAAATATCATTTGTATAACGTACAATTGGTCctttccattattttttg
cttaattAAACATCAAATTGGACTTTGTTAGTGTAAATTTAAGTATGTTA
GGGGATTCGCTGCATCGAAAGGGGGTTTAAAGGAATTTTCATTTGCGTGT
CCAATTTCCGTCGTTTGGTCAACGAATATGCCAGTCTTAAATCCTATTAT
ATCTAACCCAcagacctttatataccctggaccaagctatatctatCATT
TTTTGACAGGAGTTTTCTTTAAAGTGCAGCTGTTAATAAATTAATGTTAA
ACGGCGctaaatcatcaaaagtatttgaggaaaagtaaatctagcgctct
cgatgcatttacaccgctattgagtagtactactattagggtaccacttt
caaaaaaattccgaTGGCCAGGATTGAGAAAATTAGTCCAgagtatataa
aggtcagtgatctAACCTCCCCATTAAGATTGAAAAATGGAATCACGGTA
ACTATAATTTCGATTCTTGGGcgtttccagaaaaaatttgaatatggagg
CTGGAGGATATAAAAGTCTTTGGAAATTTACTAGTAATGACACCATTCAA
ACAATATACTGGCTAAACTCCATTCTCctccttcactgcgtacgttcTAA
ATGGATGGCGGCTTCTTCCAAAACATCATATTTTCTTTTCAGTCTCGAAA
AGAAAGATGTATTGTTGCAGCAGGAAAAAGACTCTCAAAGTGACGAATCA
TTGATAATTAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019834-exon-sc0000338-1491911889:263046..263074 | TCONS_00019834-exon-sc0000338-1491911889:263046..263074 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1510915933:263046..263074 | TCONS_00019834-exon-sc0000338-1510915933:263046..263074 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1575043694:263046..263074 | TCONS_00019834-exon-sc0000338-1575043694:263046..263074 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1491911889:264180..264351 | TCONS_00019834-exon-sc0000338-1491911889:264180..264351 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1510915933:264180..264351 | TCONS_00019834-exon-sc0000338-1510915933:264180..264351 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1575043694:264180..264351 | TCONS_00019834-exon-sc0000338-1575043694:264180..264351 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1491911889:264647..264749 | TCONS_00019834-exon-sc0000338-1491911889:264647..264749 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1510915933:264647..264749 | TCONS_00019834-exon-sc0000338-1510915933:264647..264749 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1575043694:264647..264749 | TCONS_00019834-exon-sc0000338-1575043694:264647..264749 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1491911889:265332..265379 | TCONS_00019834-exon-sc0000338-1491911889:265332..265379 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1510915933:265332..265379 | TCONS_00019834-exon-sc0000338-1510915933:265332..265379 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1575043694:265332..265379 | TCONS_00019834-exon-sc0000338-1575043694:265332..265379 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1491911889:265803..265920 | TCONS_00019834-exon-sc0000338-1491911889:265803..265920 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1510915933:265803..265920 | TCONS_00019834-exon-sc0000338-1510915933:265803..265920 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1575043694:265803..265920 | TCONS_00019834-exon-sc0000338-1575043694:265803..265920 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1491911889:269638..269708 | TCONS_00019834-exon-sc0000338-1491911889:269638..269708 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1510915933:269638..269708 | TCONS_00019834-exon-sc0000338-1510915933:269638..269708 | Clytia hemisphaerica | exon |
| TCONS_00019834-exon-sc0000338-1575043694:269638..269708 | TCONS_00019834-exon-sc0000338-1575043694:269638..269708 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000338 | supercontig | sc0000338:263046..269708 + |
Blast
The following BLAST results are available for this feature:
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