XLOC_022610 (gene) - C. hemisphaerica

Overview
NameXLOC_022610
Unique NameXLOC_022610
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001736:14904..25085+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_022610 ID=XLOC_022610|Name=XLOC_022610|organism=Clytia hemisphaerica|type=gene|length=10182bp|location=Sequence derived from alignment at sc0001736:14904..25085+ (Clytia hemisphaerica)
TGGAAATGCAGGTGATGATGTCGCAACATGTTTTTCTTCCTTCTCTCAAG
AATTTCCTCTTTTCTTTACGAAGAATCACTCAAGAGTTTGTGTAAGTCAA
caatcatttcaaaatttaaggtTAATACTAAAATAATACTGTGCGTGATT
TACTTCGATATTCTCTTTGCAGGctcggcggaagcggggagactgggaaG
GCTTCAGCCTCCCTACTTTTGAGCAAACTGCACGATTTTTCACTAATTCC
TAGTGAAATTCAACTTATTTCAGCCTTCATCCTCCCCACCGTTCCGCTGT
GCTTGCTTTGATAGCACGTATTTAGTACCCCATTTATTCACTCAGCGCTC
ATCGATCACCTTGAATGTCTGATGGACAGGTGGATATGCTCTAGATCATA
ATCATTATTTGTGTTGGCAAGCACACGATACGTTCGaataacaatttcat
tttcatttttagataaGCAGTAATGGATATATTACAGTAGACAAACATGT
AAGAAGAATTGCTGCTCCACTAACATCCGACTACACCGTCCTTGTGCCAT
TCAATCANTACAGTAGACAAACATGTAAGTAAAATTGCTGCTCCACTAAC
ATCCGACTACACCGTCCTTGTGCCATTCAATCACGACATGAGAAGCCTTG
GCAACGATACTTTTTTCCGAGCaactaaaaataaaactattttgaaaatg
attgacaaaGACATTGCGCAGAAACACTCTGGAGAATTTCGCTCAAAAGA
GGCAATCGTAATAACTTTCAATAACTTACAATATTACACGCCCTATTCAA
ACCTTATATATAATTATCAAGCTGTCCTTGCTACAGACTATGATAAGGTT
TACGCAATATTCCACTATGAAAGGATGGATACTCGTGGAAAAAATAATAT
TGGTTTCAATGAGCCAAATACAACTGACTCGTGTAACACAACATTGATAT
TTAATTTGAATGAGAAAAATCTTACAACGTCTTCCAACATTGATAAACCT
GGGAAATTTGTCTTTTTGCTTGAAAGGTGCGTACCCATTGTTCtatttga
agactttgctgcACCTACCACAGCACAAAAGtttatataaaaacatccaT
ATGTCATTAAGTTTTCCATGCTGCATTTGCTGATAAGAAAATATGTTAAA
GTCGAATGAAAAAAGAACCTTAAAGCCCGGGGGTACCACCCTTGCCGACC
AACGGGGGTGCTCCACTGAGGTTCAAAAATtaaccctacgtgggactcgt
ttttgaaagattttaccgaaatttgcggaaaaagtgaccctgaatgggac
tgaaattccaaaatgttctcaaaatttgctaattttccCAAAGGTTTTCC
agaaaaggcaccctacgagggactgatttctcaattttggtgtttttgcg
attCTACCTGGGACTTGtgaaggtgaaaaaaggtaccctgactaGTGGCG
CATCCCCATTACCCAGTTTGtcctagtacccccgggcctTAAAGTGACAT
AAAACACAGAGCGAgatacaaaatgaaaacaaatctcacatgtcaaaaca
aaaatccaaaatagaatttggctgattttaattgtttctattgttttcta
agtttgttttggacacgtagttttaattgttttcttttaatgacacgtgg
tttgcgcaatgGTTAcatttactacttttatgtcattttaaaaaatattt
tgtcttctGTTTACTTTAGCCCTAAATGCTTATACTGTCCACATGGTTTC
CGAACAGTAAATGCATCATGCCAAAAAGTCGACGAATTCATTATGTTTAC
AAAGCGAGATGAAATCATATTCTTAGATGCTAAACTCGATGATGAGGCTG
TTCCACCTAGTCAACCAATTCCCAATTTACAACATGCTGTTGCCATTGAT
TTCGATTACGAGAGCAGGATGATATATTATTCAGCCATCGAAGAGAGAAC
TATTAACCGTGTTGATATTTATGGAAATAACAAGATAGTTCTGGCAAGTA
AGTACGCACACGTTTTTTGTAGCGTTTTGTGTCAGCGTAATGATACTAAT
TCCCTtaagagtggtttccacatggtacccagctggcacacaacgttgtt
tcaacgtttttctaacattcacaacgtccatataacgttagatcaacgtt
gaaacaacgttgtgtgccagctgggtaggtAAAAATAGTTCACACTTAGG
CCGAATGGACTTTAACTCTTCGtgcatcttcctattttttatatgCGGAT
CTCGGGTCTCAGGATTGAGTGatatgaacttgaaattttcacaagtgACA
GATATTGACAAATGAACACGATTTACAAACCTTCAGGTCAGCCACCTGTt
tagttggtattttacagaccagaatgttaAATTAGCTGCTCGAATAAATT
AGCCGATTGGCGTGGtatttcttgttgaaattgCGTCCACTTGCCAAATT
AAATCAGATTATACCTAAACAAGATTcgcaaaaatgcgactaaatatttc
cttaaaaatgaaggtcattattgacatatactagcaagtagctgtcgcta
agaatgccccgcagagcttcctatcgaaatatccctaattaagcaaaatt
acgcatgtgtagattttaaattcgttttatcgataaaatttaagtttgag
gaagaaagcttggtttcaactttacttttgagatgacatgggatagacgg
tcgctcacatctcaaaaagaaaagttatcgctcacatgttatcacagtga
aaacgccaaaaattctgaaatttatttgattcttataaagaagacactta
taataaaaataaatatgctcatctttttcagcatactttgtttactttgt
aagacttaattaccgaaagaaatattgccttcaatcaagagttattgatt
tgattcttataaagaaaatgcttataataaagataaatatgctcatcttt
ttcgccatcctttgtttactttctaacaactaattaccgaaagatatatt
gccttcaatcaagagttattgatttgaatcttataaagaaaatgcttata
ataaaaataaatatgctaatcttttttgccatcctttgtttctaataact
aattaccagaagatatattgccttcaatcaagagttattgatttgattct
tataaagtagacgcttataatgaaaataaatatgctcatctttttatcct
ttgtttactttttaataactaattaccgaaagatatattgtcttcaatcg
agagttattgattttattcttataaagtagatgcttataataaaaacaaa
tatgctcatctttttcgccatcctttgtttactttgtaagaactaattac
cgaaaggcatattgccttcaatcaagagttatcgatttgaatcttataaa
gtagatgcttatagtaaaaataaatatgctcatctttttcgccatccttt
gtttaatttgtaagaactaattaccgaaaggcattttgccttcaatcaag
agatattgatttgattcttataaagtagactttctttaggcgctaaaacg
ggcgtcagtcagggcgtacggaaggcgttttgaacCTGGAAATTATtatt
atggagaaagcccgttttaacaaatatttcccttttgaaaaacgggaaat
attcaaaaatagtTTCAGGGTGGTATTTGGTACTTCACAGACCGATCTGT
AAAATACAAACCCCCTTTTTCGGAACTCAGGAAGTACTGtagcttttgac
ttgaaattttcgccaGTGATAGGTCTTGACCACTTAAGACAAGGTGCAAA
ATTTCGGCCACCTGCGcagttggtattttacagaccagtcagTATTTTAC
CTAAAATGCTCAACTTTTGCATAACTACTGGTCCGATCTCGATAACATTT
TGAGAGCAAGCTTCTATTATTAATACCTaccactggtccaaatttcaagt
caataggaTTTCCCAATCTTGACTTATAAAAATTTAGGACtaatttaggc
aaaaaaggcaaattaggaacggtctgtaaaatacacgctGGTGTGCAAAA
ATCttctctgggtccctctgtctttatcctggcttggcacaggctgactg
tcatttGAGACAGTCAGGTGACATTACCCCAGTGGCCTAtacaagatgac
aacaaactccaggtagactaacaggagaagaaaacaaaataaatatcaaG
AAAGGTGTAAACACCTTAGACTCATCTGGAGTCGACTGCACTAGACACCA
GGCAGGGGACATCCTCGCACATCCTGATGTACTAGgcaaatatatatagt
atgaaaaataaaatgttttcttctgtcagacctacaaacaacaaaagagt
ggccgaattctttttcctcttagagagacgatgttacaatTAGAAGGTAG
AAAATCttctctgggtccctctgtctttatcctggaTATATATGTCATAC
ATATGTCACATGGAGCTTCCACGccaaatttgaacaaaaaatatgaaaac
gaACAAAGTGAACGTAGTAGTAGTATTTTTGGAGGTgtcaaaaattgatg
acgtcatcaggtggcaatgacgtcatcactaaTGACGAAATTTTGTCAAT
AGGTGTCCACGATTTAGTTTCACTGCCCAAATTTCAGGAAAAAATAttaa
ttctatcaaaaattattaaaagttttcggccaagggggggggggctatag
CCCCCTAATATTCACGAAGGGTTATAAAGATCAAACTGACCCCcgaattt
taaaaatgaataaGAAGATGCTGATGCATGATAATCCTTACCACTTCAAC
TACGTATTTTTACGTGTCAAAAGAGTCATTTATCAGCTCTCAATTGGCTG
GTCATAGTTCGAAACAAGCAAAAATCCAGAGCTTTCCAATGGTACTAAGG
TTTTTGgctaaaagttatttttgaccCGTGTTGGTGTTTTGCAAAAAGGT
TCTGGCGTTCTAACGGTCAGGCCTCTTTTTTACGCCATAAGAACATTtat
aaagtctgttcacgataagtgtgcactcttttttcttttacctataactt
ttgaaagaattctccaatctttataaatttagtatcgttggagagatatt
tgtgagtggaacaatttgaaataaaaaagtctttaaaaaaattctaaaaa
cgaagatgaaaataaagaaaaagaaagatgaaGATGAGTCCTTCGGCATT
TTGCACATTGTATACGACCTTTGTCAGACCGCATCTAGAATATGCACAAT
CAGTATGGCAGCCGAAATTACGCCGCAGCGTTAATCTGATTGAAGGGGTC
CAAAGACGGGCAACAAGACTGATTCCGCAGTATCGTAATCTCCACTATGA
AGAGCGTTTACAAAGACTCAAGCTTCCATCTCTTGAGTTTAGAAGACTTT
TCTGCGATATGGTCCAAATGTATAAGCATATCCATTTTTATGATCCAAAA
ACAACTCNNAGAGGCCCACCTCGGGCCTGTGAACTTGTAtactgtataat
aataataataaaaaaaagatcttgtagaaaagtgctataactttcatttt
cactggagagattttttgatcttaggaggtcatcactgtgaagaaatttc
actgaaatatttattcaatataaagttatgacacaaagttaataagtgat
tgaccccaaaaaacagcagaaaacagcagaaaacagggtttttagacgtc
aatcagcttataactttgtttgatatcttttgactgaatgatcatttttc
agaaattttttcacagtgatgacgttcgatgatcaagaaatcacttcagt
gaaaatgatagttatagcacttttctataagatcttcattttttccttct
tcattttcatcttaatttgtagaattttttgattttaaattgttccactc
acaaatatctctccaacgatactaaatttatgaagattgaagaattcctt
caaaatttataggtaaaagaaaaaagagtgcacacttatcgtgaatagac
tttaaatgtttcaaatttcgaaaaaataaaacttttttaggTTCggccat
gaaggtaataaagatataaatggagagaaaacgtcttggtaatgatctaa
atggtcgttgaaatcttttataaatctattcaaagcggcttttctttgat
gtaccatcattggaagcaaaaaacatcaatttataactttaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNtcatccaaaaagacccactagatcaaaagttaaggggtggtacag
gaaaagccccccccctagttctgaaccgcccctaaaagcctagtttgaat
agggctaacattgagagttgcatcacattatcattgaaagtttcttatct
taaaatcttcacgtctaagtgggcagcagttttcatactctgacaaaatg
gtCGATACacggttcctaatcgtaacacgtaattctttttaaatctatcg
atggctttatgggtAGCTTCCCCTAAaagtttggagtattgtgcttatta
gggcttattatgtgaagttttcaatttttcatgacaaggctattatattt
caatatacttgttaaaaatgtaatgttttttcattcatcttaaatgttcc
cacgagtatacccaaaattattcaacttattcccaaagcaaccaaacagc
tccttgcttccgatgataaatcagaatagaacaaaaggcattgactctcc
atctatctttattaccttcatggttcggccaaaatttagaaatatttatt
tcatttaagtTAAAATTTGGCTTTAGTATtacaaatatgaaaaaaagata
ttgcgttgttactaaaagtggtaacatgGGGTAGCATaaggtaacagggg
gtaacaccagggtaacagggggtaacacctGGGTAACAGGGGGCAACACc
tgggtaacagggggtaacacctgggtaacagggggtaacacccGTGTAAA
AGGGGGCAACACCTGGGTAAAGGGGGGTAACACCTGGGTAACAGGGGGCA
ACACCTGGGTAAAGGGGGGTAACACCAGGGTAACAGGgtactctcttagg
gacctcacaaccTTCTGActggtgccattttatatccatccTCACTATCC
GCATCACGTTCTgtatgataaatatttttggtgtttctgTCCttttaggc
atcatattttatgattttgtcaatatttttgtcaaaaatgtcAGGGGTTT
AATAACGACAAAAAGCTCAAATTCTCCATCGAATTTCTCATCACGAAATG
CTTAAGCTAGCCACTTATGTCGAATTacgaaattttggacttctAAGCCG
GAAAGTGTCCCATACTAAACCTTATGCTTTTAAAACTACAGCCACTAACT
TTTCTAAAGATTCTGGAGATTCAATGTGGCACTTTCCTGTATTTTCAAGg
ctaaaaatctcaaaaaagagtCGAAAACTGAGGCATACCTTATTTCTACC
CATGTAATGTTACCCTCTATGCAAGCATGTAcaatataaaaaagtgtaag
aAGTACTATAACCCCCgttaacataacccccgtttttagtaataagttgg
agatttgatatttcacagaaaagtgctaccaaggggtatttcgggtccta
tatcttccgaaggactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccaattatatctggacag
actttagggATACCCTGTATACCACgagatttttttatcaataagtcatt
aaaatgttatattaaaacgaagacattgcaattagcctatttcatagttC
ATGTTttcaatatatgatttttttctacgtcactgcagtaatcaaatttt
cattGTGAATCCCTCTTTTGCGAATTAAGAtataaatttaacaaaaacat
cgaaagtGGAAAAGAGTTCTTAAATTCCCAAGTCatttaggatgattaca
aaatttagtttttgtcaaagtttttatTAAAGGGAAATTTGCACAGATTT
GTGCATTTCCCCCACtggaaattgaatagaaaagagCATGTAGCAGatac
acgaatcctatgaaataggctaatgtTGAAACGAACAATTAAGTTACGTC
ATGCGCTATCTTTTgctttgatgattggttgaacaacTGCATTCTTTATA
TAAGCCCTCGAAAAAAcataatgtcaatctggctttaaGAGTGTGTTCTA
CAGCTACAGTAGGGATGGGtcaacatttttagaaaaatataataaatcgG
AGAGTGTTAACTGttaactgtttttttttcgccGAAAGAAAACAATGTGC
TTTCAAGCAAGAGTAATTACAAAGGGCTTTCTTTTTACAATGTTTTCAGA
TCAGactttttgtgaaagtttagCTTGGGACTGGGTCAACAAACGCTTGT
ATTGGATAGACGCTGCAGATGATACAGTTAATCGATTATCACGAGACGGC
TATTCAAAAGAAGTTCTTTTCCATGAAGGAGCAGGCAGGCCACGTGCTAT
TGTGTTGATGCCATGTGACGGTAAATATTCCCCTTTAAACAAGagaattt
attgttttcatcTACTGTTCTGGTTAATTCTTtatgggacaccctgtata
atgCCAAAAGCCGCAGGGATACTAGAGTTGGAGGGTGTCAGCTTTGTGCG
GACCAGACACACAAAAAtcgacctttagagagactgaattttaaatttaa
gaATGAAAAAGTAACCCTTCGAGAGATCAAATCggcgaaaaagatgattt
tcaaaaaattcgtaccgtagaatttttcttttgactattCTTTGTTTTCA
TTCGTACCCTTACCCTTACGTTAGAGAGACTATGGAAGGGGGAAATAATC
ATCCTTGTCGTTTGCAAATACTCAGCATCAATTTTTGCCTTGTATCCTCC
AGCACCTGGTTGCGAAAAAAAGCTTACGAAGGTAATCTATGTGAAAGACA
TCTTAATTCGTGAAATTCAATAGTCGGGAGAATACTTCCCCAAATTTAGA
TAAATTTATTCTGATCCTGCGAAGTAATTCAATCTtgaatttaatcaaat
ttgatCCTGGGAAACAATAATCACAAAAATATAAACACGAAAAGTTCTAA
TATTATTCTAGGATACATGTATTGGATTGATTGGGGAGGCTCCGTTAAAC
CCTCCATTAAACATGCAACTATGGATGGATTGAAcccaaaatttattatt
gaGACCAGGCTGGGTTTGGTATATGGACTTGCTGTAGACAAAGATGAGAA
TCAATTATTTTGGGCAGACATTCTGTTTGATC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00037917TCONS_00037917Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00037917-proteinTCONS_00037917-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001736supercontigsc0001736:14904..25085 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12	0	0.14	0.12	0.94	1.17	2.3	3.1	1.16	1.48	0.64	0.86	0.06	0.11	0.02	0.06	0.25	0.36	0.04	0.05	3.94	4.26	11.68	17.36	10.84	9.71	12.37	13.07	0.05	0.04