TCONS_00037917-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00037917-protein
Unique NameTCONS_00037917-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00037917-protein ID=TCONS_00037917-protein|Name=TCONS_00037917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MRSLGNDTFFRATKNKTILKMIDKDIAQKHSGEFRSKEAIVITFNNLQYY
TPYSNLIYNYQAVLATDYDKVYAIFHYERMDTRGKNNIGFNEPNTTDSCN
TTLIFNLNEKNLTTSSNIDKPGKFVFLLESPKCLYCPHGFRTVNASCQKV
DEFIMFTKRDEIIFLDAKLDDEAVPPSQPIPNLQHAVAIDFDYESRMIYY
SAIEERTINRVDIYGNNKIVLANQTFCESLAWDWVNKRLYWIDAADDTVN
RLSRDGYSKEVLFHEGAGRPRAIVLMPCDGYMYWIDWGGSVKPSIKHATM
DGLNPKFIIETRLGLVYGLAVDKDENQLFWADILFD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_022610XLOC_022610Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00037917TCONS_00037917Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003886NIDO_dom
IPR000033LDLR_classB_rpt
IPR0110426-blade_b-propeller_TolB-like
Vocabulary: Biological Process
TermDefinition
GO:0007160cell-matrix adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007160 cell-matrix adhesion
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003886NIDO domainSMARTSM00539ylk_9coord: 1..133
e-value: 0.0031
score: 4.1
IPR003886NIDO domainPFAMPF06119NIDOcoord: 60..129
e-value: 2.6E-7
score: 31.5
IPR000033LDLR class B repeatSMARTSM00135LY_2coord: 176..218
e-value: 2.2
score: 15.6
coord: 260..305
e-value: 1.3E-5
score: 34.6
coord: 219..259
e-value: 0.23
score: 20.6
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 237..279
score: 12.5
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 280..325
score: 11.688
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 196..236
score: 5.886
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 326..336
score: 6.884
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 136..333
e-value: 1.1E-29
score: 103.1
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 153..332

Blast
[Close]
BLAST of TCONS_00037917-protein vs. Swiss-Prot (Human)
Match: LRP4 (Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4)

HSP 1 Score: 130.183 bits (326), Expect = 3.272e-33
Identity = 77/205 (37.56%), Postives = 114/205 (55.61%), Query Frame = 0 
Query:  136 CPHGFRTV--NASCQKVDEFIMFTKRDEI--IFLDAK-LDDEAVPPSQPIPNLQHAVAIDFDYESRMIYYSAIEERTINRVDIYGNNKIVLANQTFCES---LAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFHEGAGRPRAIVLMPCDGYMYWIDWGGSVKPSIKHATMDGLNPKFIIETRLGLVYGLAVDKDENQLFWAD 332
            CP GFR +  +A  Q +D+F++F +R +I  I  D + L D+ +P    + +++ AVA+D+D     +Y++ +   TI+R    G  + V+ + +  ES   LA DWV  +LYW DA  D +   + DG  + VL  E   RPR IV+ P  GYMYW DWG S  P I+ A MD    + II + L    GLA+D    +L+WAD
Sbjct:  724 CPTGFRKISSHACAQSLDKFLLFARRMDIRRISFDTEDLSDDVIP----LADVRSAVALDWDSRDDHVYWTDVSTDTISRAKWDGTGQEVVVDTSL-ESPAGLAIDWVTNKLYWTDAGTDRIEVANTDGSMRTVLIWENLDRPRDIVVEPMGGYMYWTDWGAS--PKIERAGMDASGRQVIISSNLTWPNGLAIDYGSQRLYWAD 921

HSP 2 Score: 108.227 bits (269), Expect = 8.435e-26
Identity = 63/206 (30.58%), Postives = 100/206 (48.54%), Query Frame = 0 
Query:  136 CPHG--FRTVNASCQKVDE-FIMFTKRDEIIFLDAKLDDEAVPPSQPIPNLQHAVAIDFDYESRMIYYSAIEERTINRVDIYGNNKIVLANQTF--CESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFHEGAGRPRAIVLMPCDGYMYWIDWGGSVKPSIKHATMDGLNPKFIIETRLGLVYGLAVDKDENQLFWADILFD 336
            CP G   +    +C    E +++F+ R  I  +     D       P+P L + +++D+D     +YY+ +    I R D+ G+N   +  +     + LA DWV + LYW D   +T+     DG  ++VL +     PRAI + P  GY++W DWG   K  I+ A +DG   K +I T LG   GL +D D  +++W D   D
Sbjct: 1335 CPTGIQLKGDGKTCDPSPETYLLFSSRGSIRRISLDTSDH-TDVHVPVPELNNVISLDYDSVDGKVYYTDVFLDVIRRADLNGSNMETVIGRGLKTTDGLAVDWVARNLYWTDTGRNTIEASRLDGSCRKVLINNSLDEPRAIAVFPRKGYLFWTDWGHIAK--IERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLD 1537

HSP 3 Score: 98.5969 bits (244), Expect = 1.448e-22
Identity = 50/153 (32.68%), Postives = 86/153 (56.21%), Query Frame = 0 
Query:  182 NLQHAVAIDFDYESRMIYYSAIEERTINRVDIYGNN--KIVLANQTFCESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFHEGAGRPRAIVLMPCDGYMYWIDWGGSVKPSIKHATMDGLNPKFIIETRLGLVYGLAVDKDENQLFWAD 332
            NL++A+A+DF +   ++++S +    I R ++ G+N  ++V         LA DWV+ +LYW D+    +   + DG  ++VL  +   +PRAI L P +G +YW DWG +  P I+ ++MDG   + I +T L    GL +D    +++W D
Sbjct:  466 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQNLEKPRAIALHPMEGTIYWTDWGNT--PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 616

HSP 4 Score: 93.5893 bits (231), Expect = 7.389e-21
Identity = 67/240 (27.92%), Postives = 115/240 (47.92%), Query Frame = 0 
Query:  104 IFNLNEKNLTTSSNIDKPGKFVFLLESPK----CLYCPHGFRTVN--ASCQK-VDEFIMFTKRDEI--IFLDAKLDDEAVPPSQPIPNLQHAVAIDFDYESRMIYYSAIEERTINRVDIYGNNK--IVLANQTFCESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFHEGAGRPRAIVLMPCDGYMYWIDWGGSVKPSIKHATMDGLNPKFIIETRLGLVYGLAVDKDENQLFWAD 332
            +F+     ++T   ++  G     L SP        CP G   ++   +C   ++ F++F +R +I  + LD     + V P      +++ +AI  D +   +Y+S      I+R ++ G+    I+       + LA D + +++YW D   + +   + DG  ++VL  +    PRAIVL    G+MYW DWG + K  ++ + MDG +   +I   LG   GL VDK  +QL WAD
Sbjct:  994 VFHRRRPPVSTPCAMENGGCSHLCLRSPNPSGFSCTCPTGINLLSDGKTCSPGMNSFLIFARRIDIRMVSLDIPYFADVVVPINIT--MKNTIAIGVDPQEGKVYWSDSTLHRISRANLDGSQHEDIITTGLQTTDGLAVDAIGRKVYWTDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIVLYHEMGFMYWTDWGENAK--LERSGMDGSDRAVLINNNLGWPNGLTVDKASSQLLWAD 1229
The following BLAST results are available for this feature:
BLAST of TCONS_00037917-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRP43.272e-3337.56Low-density lipoprotein receptor-related protein 4... [more]
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