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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037917 ID=TCONS_00037917|Name=TCONS_00037917|organism=Clytia hemisphaerica|type=transcript|length=1275bpRun BLAST on NCBI protein sequence of TCONS_00037917-protein >TCONS_00037917-protein ID=TCONS_00037917-protein|Name=TCONS_00037917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp MRSLGNDTFFRATKNKTILKMIDKDIAQKHSGEFRSKEAIVITFNNLQYYRun BLAST on NCBI transcript from alignment at sc0001736:14904..25085+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00037917 ID=TCONS_00037917|Name=TCONS_00037917|organism=Clytia hemisphaerica|type=transcript|length=10182bp|location=Sequence derived from alignment at sc0001736:14904..25085+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001736:14904..25085+ >TCONS_00037917 ID=TCONS_00037917|Name=TCONS_00037917|organism=Clytia hemisphaerica|type=CDS|length=4032bp|location=Sequence derived from alignment at sc0001736:14904..25085+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00037917 vs. Swiss-Prot (Human)
Match: LRP4 (Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4) HSP 1 Score: 130.183 bits (326), Expect = 7.415e-32 Identity = 77/205 (37.56%), Postives = 114/205 (55.61%), Query Frame = 3
Query: 672 CPHGFRTVN--ASCQKVDEFIMFTKRDEI--IFLDAK-LDDEAVPPSQPIPNLQHAVAIDFDYESRMIYYSAIEERTINRVDIYGNNKIVLANQTFCES---LAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFHEGAGRPRAIVLMPCDGYMYWIDWGGSVKPSIKHATMDGLNPKFIIETRLGLVYGLAVDKDENQLFWAD 1262
CP GFR ++ A Q +D+F++F +R +I I D + L D+ +P + +++ AVA+D+D +Y++ + TI+R G + V+ + + ES LA DWV +LYW DA D + + DG + VL E RPR IV+ P GYMYW DWG S P I+ A MD + II + L GLA+D +L+WAD
Sbjct: 724 CPTGFRKISSHACAQSLDKFLLFARRMDIRRISFDTEDLSDDVIP----LADVRSAVALDWDSRDDHVYWTDVSTDTISRAKWDGTGQEVVVDTSL-ESPAGLAIDWVTNKLYWTDAGTDRIEVANTDGSMRTVLIWENLDRPRDIVVEPMGGYMYWTDWGAS--PKIERAGMDASGRQVIISSNLTWPNGLAIDYGSQRLYWAD 921 HSP 2 Score: 107.842 bits (268), Expect = 7.445e-25 Identity = 63/206 (30.58%), Postives = 100/206 (48.54%), Query Frame = 3
Query: 672 CPHG--FRTVNASCQKVDE-FIMFTKRDEIIFLDAKLDDEAVPPSQPIPNLQHAVAIDFDYESRMIYYSAIEERTINRVDIYGNNKIVLANQTF--CESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFHEGAGRPRAIVLMPCDGYMYWIDWGGSVKPSIKHATMDGLNPKFIIETRLGLVYGLAVDKDENQLFWADILFD 1274
CP G + +C E +++F+ R I + D P+P L + +++D+D +YY+ + I R D+ G+N + + + LA DWV + LYW D +T+ DG ++VL + PRAI + P GY++W DWG K I+ A +DG K +I T LG GL +D D +++W D D
Sbjct: 1335 CPTGIQLKGDGKTCDPSPETYLLFSSRGSIRRISLDTSDH-TDVHVPVPELNNVISLDYDSVDGKVYYTDVFLDVIRRADLNGSNMETVIGRGLKTTDGLAVDWVARNLYWTDTGRNTIEASRLDGSCRKVLINNSLDEPRAIAVFPRKGYLFWTDWGHIAK--IERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLD 1537 HSP 3 Score: 98.5969 bits (244), Expect = 7.724e-22 Identity = 50/153 (32.68%), Postives = 86/153 (56.21%), Query Frame = 3
Query: 810 NLQHAVAIDFDYESRMIYYSAIEERTINRVDIYGNN--KIVLANQTFCESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFHEGAGRPRAIVLMPCDGYMYWIDWGGSVKPSIKHATMDGLNPKFIIETRLGLVYGLAVDKDENQLFWAD 1262
NL++A+A+DF + ++++S + I R ++ G+N ++V LA DWV+ +LYW D+ + + DG ++VL + +PRAI L P +G +YW DWG + P I+ ++MDG + I +T L GL +D +++W D
Sbjct: 466 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQNLEKPRAIALHPMEGTIYWTDWGNT--PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 616 HSP 4 Score: 93.2041 bits (230), Expect = 4.617e-20 Identity = 67/240 (27.92%), Postives = 115/240 (47.92%), Query Frame = 3
Query: 576 IFNLNEKNLTTSSNIDKPGKFVFLLESPK----CLYCPHGFRTVN--ASCQ-KVDEFIMFTKRDEI--IFLDAKLDDEAVPPSQPIPNLQHAVAIDFDYESRMIYYSAIEERTINRVDIYGNNK--IVLANQTFCESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFHEGAGRPRAIVLMPCDGYMYWIDWGGSVKPSIKHATMDGLNPKFIIETRLGLVYGLAVDKDENQLFWAD 1262
+F+ ++T ++ G L SP CP G ++ +C ++ F++F +R +I + LD + V P +++ +AI D + +Y+S I+R ++ G+ I+ + LA D + +++YW D + + + DG ++VL + PRAIVL G+MYW DWG + K ++ + MDG + +I LG GL VDK +QL WAD
Sbjct: 994 VFHRRRPPVSTPCAMENGGCSHLCLRSPNPSGFSCTCPTGINLLSDGKTCSPGMNSFLIFARRIDIRMVSLDIPYFADVVVPINIT--MKNTIAIGVDPQEGKVYWSDSTLHRISRANLDGSQHEDIITTGLQTTDGLAVDAIGRKVYWTDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIVLYHEMGFMYWTDWGENAK--LERSGMDGSDRAVLINNNLGWPNGLTVDKASSQLLWAD 1229 The following BLAST results are available for this feature:
BLAST of TCONS_00037917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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