TCONS_00040465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040465
Unique NameTCONS_00040465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040465 ID=TCONS_00040465|Name=TCONS_00040465|organism=Clytia hemisphaerica|type=transcript|length=665bp
AGTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGA
AGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGTTATATGCGAACGAATG
AAGATGACTTTCTTCCTTTCACCTCCAACACGAATACCGGTGACATGCTT
AGCACTGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTACCAC
GTGGGGTGGTCAACTAGAGATTCGTGCGATATCGAACGTGTATCAACAAA
GAGTGGAGATTTATCAAGCCAACGCTCCCAGGCTAGTGATCGGTGAAGAA
CATGTAGCCTCTACTCCTCTTCGATTATCGTGAAATTCTCTTGACTTTGA
GTTCACTCTCATTGCGTGGCTGTCTCACTGAATGTATGTACCATCTTGGA
TGTCTATCCGTTAATTACATGAGAGAGGATTCTACTTGTGAAATCTTGGG
GAACATAATCCAAAGAAACATTGAACAACACGTGACCGTCTTAACCAATC
AGACGGGTTGGAATCATTTCGAAACAAATTATGACCGAAAAGCTaTTGGA
ATCACTTGTTCCCGAAGTAATCCATGCCCATCGGATAAACGTTGTGTTGA
TAATTGTGATGGCTTGGCTTCTTGCGTCCCTCTTACAGTCGGCGGAATTC
AACAATCGTGTGTTC
Run BLAST on NCBI

protein sequence of TCONS_00040465-protein

>TCONS_00040465-protein ID=TCONS_00040465-protein|Name=TCONS_00040465-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
SLYNSVIVQKFGSSTKEALKELRQKTAGYMRTNEDDFLPFTSNTNTGDML
STEEYGKYCDDIENTTTWGGQLEIRAISNVYQQRVEIYQANAPRLVIGEE
HVASTPLRLS
Run BLAST on NCBI

transcript from alignment at sc0002439:9034..19025-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040465 ID=TCONS_00040465|Name=TCONS_00040465|organism=Clytia hemisphaerica|type=transcript|length=9992bp|location=Sequence derived from alignment at sc0002439:9034..19025- (Clytia hemisphaerica)
AGTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGT
AAGTTATTTTTGCTGTTCTCAACAAGTGAAATGAACTGTCTCCAACGTTT
TTACCTCAATTTTAACATTGTCAATAATTTTGAACTTCTAAATATCGAGG
GTACTGTAGTATTATTAATCACTGTTTGATTTTTCAACAGAATCTATCAG
ATTTCTCTATACCAGCAGATACCAGCACTGTGTAACCAAATTCTAACCTT
TTCTTCGTCTTATTTGTGCTTTCAAGGAAGCGTTGAAAGAGTTACGGCAA
AAGACGGCAGGTTATATGCGAACGAATGAAGATGACTTTCTTCCTTTCAC
CTCCAACACGAATACCGGTGACATGCTTAGCACTGGTGAGTTTTCAATGG
TTGTTGACTGTTAGAAAGTTTTTTGAAATTACTGACCTATCAAAGGTTCC
TATACCAATAAAATATTTTGAAGAATCAAACTGGTTCTTATTTTTGGACC
TACCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ACGCTATATTTTCTGACTGATTTTTTTCATTTTTCTTTTCGCATTGCTAT
CTAACTTTAATCATCAGGTAGGTCCATTCAGCATATTGCTTGTTATATTT
AAAGCTTTTAAAAAGGAAACGGTGAAAATCACGATTAAAAGCTTTCGCAA
CGCTCTCTTTTCGGTACTCCTAAAATAGAGTGCACCGCCAGAAACGACGG
CCGATTTCAAACCACTATGAATCTTTTTCGACACTTTGAATAATTTTGTT
TTTGTTACAGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTAC
CACGTGGGGTGGTCAACTAGAGGTATGTTATTTCATTGTAAAGCTCATAT
CCGGGGGGAGGGGGGCTACTCGATTTCGAAATGACGGTATGTGCTTTTCA
AAATCTGCTTTTCAAAATCTGCTTTTCAAAATCGTACCCTTACAGTGCAG
TTCAATATGGCTGAACAGGTACCCTTTCAGTGCATTTTCTCATGATTTAC
CCAACCCTTATAGTGCACTATATTTTTCAGTTGTAAATCTGCATGAAAAA
AGAAGCTTGGGAAATTTTCTGTTTCAAAGAAAAACTCAGAAAATTATTTT
TGTCAGCTGTAATTATCAGACAATAGAAACTTTTTCAAACAAACGAGAAG
TAAAAACCTTTATTTTTATCAGTTATTTTGAATTTGTTTTAATTCGACTC
TTGCAGTGCTATCTGACAGAAACACACCCTTACAGTGCATTTTGGGATGC
TGAAAAACCCGGTACATGACGTAAGCCAGATCATATGAGTGCCCCCCTCC
CCCTGGGGCTCATATATCTGAGGTTTCGCTGTTATCTTTTTACTGCTGGC
CAGAGTAACTGACATTGCTTCTCAAAGAATCAGTATATTACTGCTAGTAT
GAAAAGCTCGAAAAGGTTTCGAAAAAGAAATGTCCTCCTCTTTACAGATT
CGTGCGATATCGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGCCAA
CGCTCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTTC
GATTATCGTAAGTTGCCTTTTTGATGTAAACTCTGATTTTAATTATCGCC
AAAAACCAAAGACCCCACACTGATAAAGTTTATAAAGCCTCTGACATTGC
AATTTAATCTTTGACCTAGAAAGCCTTATGCTTAATATCTGGAATATGCT
CAGTCAGAGGCGTAACCACGGGTTTTCGTTTCGGGGGATGAGATTGGAAA
ATTTTTGACCTTTTTAGGGGGAATTTTTGGAGAAGATTTTTCTCGTAACT
TATGCTCCGCGGGCGTCAATTGCTGCTCTAAGAAATCTCAAGTTGCTTGA
AAAAGAGGCATCTGAAGGTCAATGTTAGCGAGAGTAAGATCACAAAAAGT
GCGGAAAAACTTAAAATTTCATGTCGCAGAGAGTTTTCTTTGTAATCTTG
GCGCCGCAGGCAAAAAGAAAATAGCTAACCAGGCGGACCACAGGGAGGCT
TTTATTTAAGATTTGGAATCCTAAAAGTGAAAATAACGCCATAGTAACAG
CAAAAAAGAAAAAAAAGCTGGAATTTGTCCACTGTTTGCTATTTATAGTA
ACAGAAATTCTGTTTTTTTTCTTTGGTTGTTTCCAATAAGAAGAATGACG
TAATCTTAACTTGTGCGAAATTCTCTCTTTCACCTTTGCAGGCAACTTGA
ATGAATGCAACTTGAAATACATAATTTATTATCGCTATTTATAGAAATTT
TCGTAGAATTGACAGTTAGTGTGACAGATGCGATGTCGTTTGTTTTTGTC
AATAATTTATATACCCCTTACCTGTTGTTATCTCCTGTCCATTTTTAAGT
TCCAGAAAACTAATACAATTTTTTAAATCGCAACCATCCTCGTATGAGTA
AAAATAATATTTAATATAGTACCATGAATGACATTTCTATGAATTTTATC
GATATAGAAAATTTAACTTAACTGGATTAACTGGATTTATGAATTTCGAT
GTCACATCAGAAAATGTTAATCAAATTTCAAACACTTTGTCTTGATAACA
CGAAGTAGAAGCATTGTGTAAAGATAATATCGATGCAATGGCTTTTCTCA
GTGTTGTTGTTTTGACCTTATCGTTATTACTAAAGTTCGCTTCTACAACG
GTGTTAGATACTCTATCGAACACTGTCAACAAAGGTGCAACTCTGGCTGG
AGAAAACATCGAATCTTTACTACCCGATGCCGAAGTTGCTTTAGCTGGAT
CCATCATTAATTACAGTAAATGGTCTCTCATCGAACGTGAATGGGAAATA
GAATACGGAGATGTTGATATCCCTGCAGAGACTGTACACCCTGGGTACGA
GGAAGCTTTTGTTACGGAAAAAGATTCGGCTTTCTTCAAGCTTCATCATG
GTGTTTCTGGCAAACTGTCATGGGAGGTCAAAACCTTTAATGAATCATAC
ATAATTCATTTTATGTATGATATCCCCTATGATTTGGGGTTCAAGGAGCA
TAACCAACTGGCTATTGCTCTCTGCTCATCAAACGACAGCCTTTGCCGGG
AACTTTCCCGATCGGATTTGAAATCGAAGACGTACTCTTTCTCCAAACGT
CGGCTTTACAGATATACCATCGAAGATGTGTCTGTTTGTAACCAGGATTT
ATGCGTCTTCGCTAAGATGGGTACTGGACACAAAGCCACAGCCAAAATCA
GAGTCTTCCCAACGCGAGAAGAAGATGCCGCTACGAAAATAAAGGAAAAA
TTGCAACATGATTCCTTTGGAAATCAAGAATATGATAATTTTTTGGAAGA
CGAAAAAGATTCGTCCAACCGAACCTCCAGAGCTGCTTTTCTCCAATTAT
ATTCATTCTTCACGATTGTTGTTGTCACCCTCGCATATGTTGGGCTGGTG
TAACTTGACGATCTTATCGGATGTTATTTCTAACCTGAAGAACCTTTTTT
TTAAATTTAGCAGACACAAACTTGAACAGTGAAAAATGGCACTTTGAAAA
ACCTTTGTGACTGATTGAAAACTAGCCATTACAACAGCATAATGAAAAAT
ATACAGTCAAGCTTGGAAAACAATCTTAAGTTTTTTTTAATTTCTGTTAT
TATGATTTTATTACCACCTTTTTTGAATTTTATTTTCCGAAGTATCGCGC
ACATTTTTTTCTATATCAAAATTTTGTTCTTTTTTCTACGGTATTTATTG
ATGGGAGTTGCTGATGATTCTTGGTGATTCTGGTTTTAGGTGTAATAGAC
AGACCCTATGAAAGACCCTTCATTCTTGAATATAATATAAATATTTTATG
AAGACTAGAAACCCTTGAAAATATATTCCAAGAACCCTGTTAACCATTGA
CACCCTTGCTATATAGGGCTCTTTGTATAAAAGTTAATATTTGTGTCACA
TTTTATTTTGTGTCTATTTTACGTGATTTTCAATGAAATATTTACGATAT
TTTAAGAAATGTTTGTTTCAAATTTTATTCAAAAAAGATAAATTTCCATT
TTCATTCCACGTACAAACAACCGATTGAATTTTTATAAAAATAAGGTTTA
CTGAAATATATCGCCTGGCAACTAAACTGACTTGAAAGAAATATTGATTG
GTTTAGTCCCTTTTTCATTTAGTATTCAACTCGAGTATTTTTCAAAAATT
AATTGATTGATCGAAGTTTCTTTGACTCGTCATTTTCGATGTTTTTTGTA
AAAGAAACCTCTTTACAATGAAGTTGGCACTGAAAATTGCGTTTTGTTTT
ACCATTTTCTGCCTAAGTTTCACCTTTTCGCATGTTTTCCAATTAAAACA
GTGCAATAATTTTGATGCAGAATTTTCCAAAGTCACTTATGGTCAACGGC
TTTTAGGTGAAATTCTCTTGACTTTGAGTTCACTTTCATTGCGTGGCTGT
CTCACTGAATGTATGTACCATCTTGGATGTCTATCCGTTAATTACATGAG
AGAAGATTCTACTTGTGAAATCTTGGGGAACATAATCCAAAGAAACATTG
AACAACACGTGACCGTCTTAACCAATCAGACGGGTTGGAATCATTTCGAA
ACAAATTATGACCGAAAAGCTGTAAGTTATCAATATCATTCATTCACTTT
TGAACTTTTAGTGGTCCGAATTTCAAAATTTGAGCTTTCAAAAGCCTCCA
TTTGAGCTTTCAAGAGCCTCCATTTGAGCGGTGTACTAAAGTCTTTTGTT
GGACCTGAATCGAGGTTTTGCAGTTGACTTTTCGTAGCTTAAACATCATT
ATATAAACTCTTTATTCTATTTTGTTTTTTAGATTGGAATCACTTGTTCC
CGAAGTAATCCATGCCCATCGGATAAACGTTGTGTTGATAATTGTGATGG
CTTGGCTTCTTGCGTCCCTCTTACAGTCGGTAAGACATCGGAGTATCCAA
TAAGCGACCATTCTGAAAACTAATCTTCCTTCCTTCTCTTCACTATTTAG
GCGCCATTGCTTTTTTGGACCTACCTCGGAGGTCCTTTAAATTAATGTTC
GTCCGTCCGTCCGTCCGTCCGTTCGTTCGTTCGTCTGTTACCAGTTTTTC
TCGGGATTGGCTCATTACTTTATTCTGTTTTTTGGCGCAATGATGCAAAA
TGATGATTCCTAAAAAGTGAGGGAGCCCGATTTTCGAAAAAAATTTTCCG
GTCGTATGCCGGAAAACTGTNTTTTTGTAAAAGAAACCTCTTTACAATGA
AGTTGGCACTGAAAATTGCGTTTTGTTTTACCATTTTCTGCCTAAGTTTC
ACCTTTTCGCATGTTTTCCAATTAAAACAGTGCAATAATTTTGATGCAGA
ATTTTCCAAAGTCACTTATGGTCAACGGCTTTTAGGTGAAATTCTCTTGA
CTTTGAGTTCACTCTCATTGCGTGGCTGTCTCACTGAATGTATGTACCAT
CTTGGATGTCTATCCGTTAATTACATGAGAGAGGATTCTACTTGTGAAAT
CTTGGGGAACATAATCCAAAGAAACATTGAACAACACGTGACCGTCTTAA
CCAATCAGACGGGTTGGAATCATTTCGAAACAAATTATGACCGAAAAGCT
GTAAGTTATCAATATCATTCATTCACTTTTGAACTTTTAGTGGTCCGAAT
TTCAAAATTTGAGCTTTCAAAAGCCTCCATTTGAGCTTTCAAGAGCCTCC
ATTTGAGCGGTGTACTAAAGTCTTTTGTTGGACCTGAATCGAGGTTTTGC
AGTTGACTTTTCGTAGCTTAAACATCATTATATAAACTCTTTATTCTATT
TTGTTTTTTAGATTGGAATCACTTGTTCCCGAAGTAATCCATGCCCATCG
GATAAACGTTGTGTTGATAATTGTGATGGCTTGGCTTCTTGCGTCCCTCT
TACAGTCGGTAAGACATCGGAGTATCCAATAAGCGACCATTCTGAAAACT
AATCTTCCTTCCTTCTCTTCACTATTTAGGCGCCATTGCTTTTTTGGACC
TACCTCGGAGGTCCTTTAAATTAATGTTCGTCCGTCCGTCCGTNNNNNNN
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NNNNAAGGGGGGGGGGGCATTCTAACAAAGGGTACTGGTAATTTTTGTTC
GATTTAAGGGGGGAGTTTTCTTTAAGGGCAAAGTAACATTTTTTAAGGGG
GGAGACTGAAAAGGTAGGCAAAAACCATGCAGGTAGGCAAAAACCATGCA
GCTTTTGATATAGGGCCTGTCCTAGAAGTCTCTAAGTGTTCCCACAAGAA
GTAATCTTTCGGTTTCCCTTGTAAAAAAATAACGTCATACACAAAAAGTC
ACAAATTTTCCTTCGCTTTCCAAAAGTGAAGAAATGAACAGTTTTGTGGT
GAAGATATAACGAGAGAACGTTTTCAAATACTGTGTTCTGTCAATTTTGC
TCATTTCTGTCTATTTAGGCGGAATTCAACAATCGTGTGTTC

Coding sequence (CDS) from alignment at sc0002439:9034..19025-

>TCONS_00040465 ID=TCONS_00040465|Name=TCONS_00040465|organism=Clytia hemisphaerica|type=CDS|length=1665bp|location=Sequence derived from alignment at sc0002439:9034..19025- (Clytia hemisphaerica)
GTGAATTCGTGCGATATCGAACGTGTATCAACAAAGAGTGGAGATTTATC
AAGCCAACGCTCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACT
CCTCTTCGATTATCAGGAGTATGGGAAGTACTGTGATGACATAGAGAATA
CTACCACGTGGGGTGGTCAACTAGAGGAAGCGTTGAAAGAGTTACGGCAA
AAGACGGCAGGTTATATGCGAACGAATGAAGATGACTTTCTTCCTTTCAC
CTCCAACACGAATACCGGTGACATGCTTAGCACTGAGTCTGTATAATTCG
GTTATCGTTCAAAAGTTTGGTTCATCCACCAAAGTGAATTCGTGCGATAT
CGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGCCAACGCTCCCAGG
CTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTTCGATTATCAGG
AGTATGGGAAGTACTGTGATGACATAGAGAATACTACCACGTGGGGTGGT
CAACTAGAGGAAGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGTTATAT
GCGAACGAATGAAGATGACTTTCTTCCTTTCACCTCCAACACGAATACCG
GTGACATGCTTAGCACTGAGTCTGTATAATTCGGTTATCGTTCAAAAGTT
TGGTTCATCCACCAAAGTGAATTCGTGCGATATCGAACGTGTATCAACAA
AGAGTGGAGATTTATCAAGCCAACGCTCCCAGGCTAGTGATCGGTGAAGA
ACATGTAGCCTCTACTCCTCTTCGATTATCAGGAGTATGGGAAGTACTGT
GATGACATAGAGAATACTACCACGTGGGGTGGTCAACTAGAGGAAGCGTT
GAAAGAGTTACGGCAAAAGACGGCAGGTTATATGCGAACGAATGAAGATG
ACTTTCTTCCTTTCACCTCCAACACGAATACCGGTGACATGCTTAGCACT
GAGTCTGTATAATTCGGTTATCGTTCAAAAGTTTGGTTCATCCACCAAAG
TGAATTCGTGCGATATCGAACGTGTATCAACAAAGAGTGGAGATTTATCA
AGCCAACGCTCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACTC
CTCTTCGATTATCAGGAGTATGGGAAGTACTGTGATGACATAGAGAATAC
TACCACGTGGGGTGGTCAACTAGAGGAAGCGTTGAAAGAGTTACGGCAAA
AGACGGCAGGTTATATGCGAACGAATGAAGATGACTTTCTTCCTTTCACC
TCCAACACGAATACCGGTGACATGCTTAGCACTGAGTCTGTATAATTCGG
TTATCGTTCAAAAGTTTGGTTCATCCACCAAAGTGAATTCGTGCGATATC
GAACGTGTATCAACAAAGAGTGGAGATTTATCAAGCCAACGCTCCCAGGC
TAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTTCGATTATCAGGA
GTATGGGAAGTACTGTGATGACATAGAGAATACTACCACGTGGGGTGGTC
AACTAGAGGAAGCGTTGAAAGAGTTACGGCAAAAGACGGCAGGTTATATG
CGAACGAATGAAGATGACTTTCTTCCTTTCACCTCCAACACGAATACCGG
TGACATGCTTAGCACTGAGTCTGTATAATTCGGTTATCGTTCAAAAGTTT
GGTTCATCCACCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024609XLOC_024609Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040465-proteinTCONS_00040465-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040465-exon-sc0002439-1575043694:18978..19025TCONS_00040465-exon-sc0002439-1575043694:18978..19025Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1575043694:18641..18749TCONS_00040465-exon-sc0002439-1575043694:18641..18749Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1575043694:16104..16165TCONS_00040465-exon-sc0002439-1575043694:16104..16165Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1575043694:15369..15478TCONS_00040465-exon-sc0002439-1575043694:15369..15478Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1575043694:11376..11590TCONS_00040465-exon-sc0002439-1575043694:11376..11590Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1575043694:11068..11164TCONS_00040465-exon-sc0002439-1575043694:11068..11164Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1575043694:9034..9057TCONS_00040465-exon-sc0002439-1575043694:9034..9057Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1510915933:18978..19025TCONS_00040465-exon-sc0002439-1510915933:18978..19025Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1510915933:18641..18749TCONS_00040465-exon-sc0002439-1510915933:18641..18749Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1510915933:16104..16165TCONS_00040465-exon-sc0002439-1510915933:16104..16165Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1510915933:15369..15478TCONS_00040465-exon-sc0002439-1510915933:15369..15478Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1510915933:11376..11590TCONS_00040465-exon-sc0002439-1510915933:11376..11590Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1510915933:11068..11164TCONS_00040465-exon-sc0002439-1510915933:11068..11164Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1510915933:9034..9057TCONS_00040465-exon-sc0002439-1510915933:9034..9057Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1491911889:18978..19025TCONS_00040465-exon-sc0002439-1491911889:18978..19025Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1491911889:18641..18749TCONS_00040465-exon-sc0002439-1491911889:18641..18749Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1491911889:16104..16165TCONS_00040465-exon-sc0002439-1491911889:16104..16165Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1491911889:15369..15478TCONS_00040465-exon-sc0002439-1491911889:15369..15478Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1491911889:11376..11590TCONS_00040465-exon-sc0002439-1491911889:11376..11590Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1491911889:11068..11164TCONS_00040465-exon-sc0002439-1491911889:11068..11164Clytia hemisphaericaexon
TCONS_00040465-exon-sc0002439-1491911889:9034..9057TCONS_00040465-exon-sc0002439-1491911889:9034..9057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002439supercontigsc0002439:9034..19025 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.277237	0.318707	0.293399	0	0	0	0	0.261008	0.559004	0	0.195791	0	0.734685	1.46984	0.994882	0.681929	0.5113	0.650311	1.79918	2.04078	2.61546	0.556939	0.350899	1.72351	0	0	0.827063	0	0	1.004
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
Blast
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BLAST of TCONS_00040465 vs. Swiss-Prot (Human)
Match: OTU6B (OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.152e-28
Identity = 47/88 (53.41%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:   64 LRQKTAGYMRTNEDDFLPFTSNTNTGDMLSTEEYGKYCDDIENTTTWGGQLEIRAISNVYQQRVEIYQANAPRLVIGEEHVASTPLRL 327
            LR +TA YM+++ +DFLPF +N NTGDM + EE+ KYC+DI NT  WGGQLE+RA+S++ Q  +EI QA++P +++GEE+ +  PL L
Sbjct:  179 LRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEY-SKKPLIL 265
The following BLAST results are available for this feature:
BLAST of TCONS_00040465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTU6B2.152e-2853.41OTU domain-containing protein 6B OS=Homo sapiens G... [more]
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