TCONS_00040258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040258
Unique NameTCONS_00040258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040258 ID=TCONS_00040258|Name=TCONS_00040258|organism=Clytia hemisphaerica|type=transcript|length=819bp
ATAGGTACACCAAGATCCTTGAAGAAAGTCTCAGTCAATTTGAATAACAT
GTTTGAAGATGTGGACGATGAATGCACTATAGTACCAGATCAATCAACAG
CTTATCAAACTGCTCTTGAAGATCAGTCATCGGCGATGCATTCAAGTCTC
ATCATACAAGAAGAAGCCAATAAAGGTATTGACAGTATCAAGCAAATGGA
ATCACTCAGACATCAAATTCATTCCTCTTTTTACCCAAACCACAGAGaaa
tctCTCCAGGAAATCTGTCAGATACATCGAGTGTTGATACGATAGCATTG
TTACGATCTACTATTTCACTACCATCACCGGAACTCCAGCTTGATGAAAA
TGGTATTCTGATAGCATCTATGAACAATTTGAAAAGTTTGTACCACTCAC
CATCGAGTATCCTGGATTCTTCACTTGCAGCTGAAAAcaccattttgaaa
gaaaacattgaaaaagagAGACTTAGGCGAAAGCATTGTGAAGATCAAAT
TAAGATACTTCAACAAAAGCTTCTGGATAGCCAAGAGCAACTAGCTGTAA
GTGTATCGACAGATCGGAAAAAACAAATCATGATAGAACAATTGGATAAT
acTCTGGCAAACGTGGTGGAGGGATGGAAAAAGAAGGAGAGCTTACGAGA
TACAGCGTACAAGCGCGTTTGTTCGGAGAAAGAAACATTAGAATCCACTG
TGCAGAGGCAAGAAGAGTTTGGATTTTGATCAAACCACTCGACTGAAACA
GCCCTTCTCTATGCTATCAACAAAATATCAAATGCTTTGAATGAAGGTAA
GTATGGATGCTCTATTTTC
Run BLAST on NCBI

protein sequence of TCONS_00040258-protein

>TCONS_00040258-protein ID=TCONS_00040258-protein|Name=TCONS_00040258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
IGTPRSLKKVSVNLNNMFEDVDDECTIVPDQSTAYQTALEDQSSAMHSSL
IIQEEANKGIDSIKQMESLRHQIHSSFYPNHREISPGNLSDTSSVDTIAL
LRSTISLPSPELQLDENGILIASMNNLKSLYHSPSSILDSSLAAENTILK
ENIEKERLRRKHCEDQIKILQQKLLDSQEQLAVSVSTDRKKQIMIEQLDN
TLANVVEGWKKKESLRDTAYKRVCSEKETLESTVQRQEEFGF
Run BLAST on NCBI

transcript from alignment at sc0002367:7037..16256+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040258 ID=TCONS_00040258|Name=TCONS_00040258|organism=Clytia hemisphaerica|type=transcript|length=9220bp|location=Sequence derived from alignment at sc0002367:7037..16256+ (Clytia hemisphaerica)
ATAGGTACACCAAGATCCTTGAAGAAAGTCTCAGTCAATTTGAATAACAT
GTTTGAAGATGTGGACGATGAATGCACTATAGTACCAGATCAATCAACAG
CTTATCAAACTGCTCTTGAAGATCAGTCATCGGCGGTCAGTAATTATATt
tcagtaaaaatcaaaatagctagttttttgttctttttatgAAATGGAAA
TACATATTATGTAAAGTGAATTCAGAAAGAACAAAACAGATTCTTTCTAT
AAAATggttaatcggattaaattttgcgagattaaatttcgcgagtgAAA
Ataatcgcaaaattttctggatttaattttgcgaatgagcctgaaaacag
ctgaaaaatagccgaaaaatatctatttttttgccaaaatggAGACTTTG
GACTGGTTTCTCCACCAAAAAtgctatttaaaaaattttgtagtggattt
aatttcgcgagtcaggaatctcacgcgtttttgcgagttttaatttcgcg
aaaatggcgaaaattcacgaaatcaaaaatttaatctcccgaaagttaat
ccgattaaagtagatAGAAAAATGTTATCTTAAACTGATCTGAaatcaaa
tatatattttctttcaatcaaaagattATTAAATCAGAAcactttctgtt
ttgtttttttagacaCTCTACACTGCAATATAGAGATATACCTATTATTG
TATTAACCAAACGAAATTATTTTTCCCGTCCCAGCTTCTTTCCTTGCAAT
CCTATTCTGCATCCCAGAGTATTggaaaaaaatcagatttttttgtTAAC
AAGGTAgtgtttcatttttatgttaTGGAATGTATTGTCAACATTTTTTT
GAACCTTAGATGCATTCAAGTCTCATCATACAAGAAGAAGCCAATAAAGG
TATTGACAGTATCAAGCAAATGGAATCACTCAGACATCAAATTCATTCCT
CTTTTTACCCAAACCACAGAGGTAAGATTTGATACAGATATTTTATATGA
TTGAACGATCGGCTAAACTATTGATAAAAACTAGCTGTGCCAGAAGCCTT
AGACTACTTTCagttcttttcttatttttgctcAAGAGTGTTCTAGTctt
gattttgaagaaaaaaaatgttgcgAATGTCGCTTATTCTGATCTCTGTC
GATTAGCTCATCAAAATCACATAGCATCTGCTAGCAGCTTATTAAATATG
TTCATTTTTATatagttctttttcaaaattttagaaatctCTCCAGGAAA
TCTGTCAGATACATCGAGTGTTGATACGATAGCATTGTTACGATCTACTA
TTTCACTACCATCACCGGAACTCCAGGTTTGATTTTAGTTTATTTTGTTT
GGTCTGCCAAACATAAACCATCTTCGACTGGAAAATGTTTTATTAGTGTA
TGTTCTATggagtcttaaaatgttctactTTTATTGAAAGCTTATTACAT
AAGAAAGATTTTCTGCTTACAATCCATTTTAAACTGACTCTTCTTATGAC
TAAAAATAGATAATCCAAACCCCCTTGTTGAGGTGGGACATCAAGGGATA
GGTGTCACAGTGTCCTCCCCCCTTTAAAAGATGGAAAAGATTTTCAGGCT
TCAAAGCAGTAAAATATAGCATATTTAtgcattttttatcaaaacaatgt
AAAAACATGCCTTTCTCTGAGAAATGGCTCAATTTTAAtcctaaaaatgt
caatttttaggcaaaaacaCATGAAATAGGAGACTTTCAgtcttcgaaaa
ttttttcgagaAGGGGGGGCAAgaggtttttcaaaaatctagggGGGTTT
GAAATGGGGTTGGGGGGCAACcagaatttctcaaaatctcAACCCACTAT
GGGTGTCAGGAAAGGATCGTTGTCAGTTGGGAGCTTGTGTTGTTTAGGTG
AATTGGGAGGAagtaattatttatttttaatagaAATCCCTTGATAATAA
AGATCTTGGGAAGTATAAAAAATTAGCAAaacgatgaaaaagaaaaaaag
tataaattaatTTGATCAATAGCACATTTCTGTCACGTTTAtaattattt
tccaattttatgATCTTCAGCTTGATGAAAATGGTATTCTGATAGCATCT
ATGAACAATTTGAAAAGTTTGTACCACTCACCATCGAGTATCCTGGATTC
TTCACTTGCAGCTGAAAAcaccattttgaaagaaaacattgaaaaagagA
GACTTAGGCGAAAGGTTTATTGatatgaatcaacggatcctgcactaatg
tacttcccagttttctcaaaggtaacgaatcgagtggggattgaacccac
gacctctcgcttgccgggcgaaaactgggaagtacatttagtgcaggatc
cgttgattcattacccataagtaatacgcacttgatttcacacagtttat
tgatatattttatcaatttgaaataatttgttTCTTTTGGTATACTTCTC
ACACAATATATATTACTTTCctgcaatatttttatattcGAGTTACTTAC
TACTTTTGCCCAATATTAATAGGAGAATCCTAGAATTTTCGTTGCTTGGG
GTTTGTATTTTCAACTGCAGACTTTTTTTCCAACTTTCCTACCTTATTGC
TTCCAGGCTTTGGATAcgctctttttcttttataagaacttagATTTATA
GGAATATTAAGACTAtaagaaattgcaaaaaaatgaaaacaatttcTTTA
GAACAATGCAGAGCCTTGAATTACttaatttcaatcaatttaggggtcaa
agtagtaaaaatgtGTATAAAGCCTGCTAATTGCTAATTGCTCTAATCGA
TTACTAATTgctcttatcctgttcttattatAGATAAGAATAGGataaga
acaatacgaggctcaaaataccaaaaaataagaacagccctGTCTCATTA
GAAATCTActgcttcttataaaaaattgcaTTTACTTTTAACCGCTTTTC
ACTGCTTTTCATCTTCTTCTATTTTACAGCATTGTGAAGATCAAATTAAG
ATACTTCAACAAAAGGTATATAATTTAAAGCAATAAATTTATCTAAGAAT
CGATGAAAACATTTGAgctatttgatatttttttacgaAGTTCGAACAAG
ACAGAATGCACTTTCACTAGAGCAGTTACACTAGAAATGTGCGAGAATTT
CACTTTAGTCCTCATCATCAATCTAGTAGTATTTTATCAAACTGAGGTCA
ATTGGTAGATATACGCGTTTTCACAACATAGTGGACTGTGCTTTGTTTTC
CAGCTTCTGGATAGCCAAGAGCAACTAGCTGTAAGTGTATCGACAGATCG
GAAAAAACAAATCATGATAGAACAATTGGATAATGTAAGTGTTATTCTCT
TTAGATTGGTGCAAACCCATCCAGTATTTGATCCaacatttgaaagtttt
tttaatgcTGGATGAAAATGTTGGACACACTTGCGTTGCGTcaaaaaatc
taacttttttaggaaatttaggGGAAAATATGTAAACTTTCCACCCAACA
TTTCGTTCAACAATGGTTTGAAAATGTCGGATCAAATGTTTCATgcattt
gcgccggcctttaCTTCTAGACAGTTATCTCAAGACGCATCTACATTTTC
ATAAACTAGAATGGATCTCGAGTGTtcctagcctgttagacgaaaaccac
TTTTTTATCGCgttttaacaaagaaaaaatttggtttgtgggaaggtact
ggctagaGTATTCCGTGTTTTGTGCATAAACTTAAAAATTAGCGCCTGGA
AAAATATGTAAGAGTTGCATTTAAGGGGatcaaataataacaataatagt
TTCAACTTCGATTCTGTAAACTCTTTCAAACAATAATTAAAAGTTCGAGA
TAACGAGCATGTGCTGTGACAGCAATAGTAAGATGCAACGATACCTCTAA
AAATAgacttgatttgatttttttgtttttgtagacTCTGGCAAACGTGG
TGGAGGGATGGAAAAAGAAGGAGAGCTTACGAGATACAGCGTACAAGCGC
GTTTGTTCGGAGAAAGAAACATTAGAATCCACTGTGCAGAGGCAAGAAGA
GGTACGGAGAGTTTTAAATTGGCTCGGTCATCGGCGACTTTTTGTTCGAT
CATTTATTAGCCTTCAACCAGCCTTTACTGACCCATTTCATTCAACCAAA
TTTATCCTACCTAAATTTAAAGTCGATAAAATTGGATGCCAAGAGAATTC
TTTTTGAAGGCCggactccactttcgcgcgaaatgggcgacagttttttt
tcttaaccttttttgcctgtagaaaagattacgtcataaaaaaagtttcg
cgcgaacaaaaaaaaattgaaggaagttctacttttttcatccgttacgt
caatttctaccaatggaattgcttcattttcaaCCGATCAATAACCttac
aaaaacttcaaaaaagttttcgctcatgtcgcgcgaaagtggagaccggc
cttaaagaTCTGACATCCGTAGAGTGCAGAcgtgtcaaaaatttttggcg
CGTAAAAAGTAGGCGTTTTGTTTCTCGAGCCATTTTTTTACAATGAATGT
GACAACAAGAAAGCAGCAAAAGAACATCGAAGAAGTACTTCAAGATATAC
CTTTATACACTACTACACAAGATtctccaacacaaaaagacacTCAAGAC
ACCTCNNNNNNNNNNNNNNTGACAACAAGAAAGCAGCAAAAGAACATCGA
AGAAGTACTTCAAGATATACCTTTATACACTACTACACAAGATtctccaa
cacaaaaagacacTCAAGACACCTCACCACACCAAGAAAAAGACTCTCTT
CAAACAAAAGACACAGACTTTGTGACAAGTCCTGGTGGTGATGTATCTTA
TTCTTTTTCTCAACCTTATAATCTTCATAAATCACTCGAGGAGGAACATA
TCGAGGGGGTTACACTTGAAATGATCTTTTACGAAATGAGGGTTATAAAG
TATGACATTGCATCAAAGATAGAGAGTGTAAAAGAAGATNagttttttca
ttgttttcatggGATCCATGAAAATTACCTATGGACTGAGCGGAACACAG
GAAGGAGTGGGGATTCATCATCTGACATCCGTAGAGTGCAGAcgtgtcaa
aaatttttggcgCGTAAAAAGTAGGCGTTTTGTTTCTCGAGCCATTTTTT
TACAATGAATGTGACAACAAGAAAGCAGCAAAAGAACATCGAAGAAGTAC
TTCAAGATATACCTTTATACACTACTACACAAGATtctccaacacaaaaa
gacactcaagaccccgggggggggcactgaccttgacgagcgacggggac
gtgccgctggagtttcaaaagtcgatcctgtcagaaatgaaatttgatga
aaaatagaccctgtcagaagaaaaattcgatgaaaaacctaccctgtcag
attttACTGTGAAAAACctataccctgtcagattctaccctgaaaaacct
accctgtcagattctatgttaaaaacctactctttatatgcgtttttcgc
gtttttcgtaaaGTATAACGTGATATCAACATTTCCAGGCTATAAACTAC
AACATTGCATAAACATTAAACCTCAATACCTGGAAAACCGACCAAAAGAA
TCGACGACGAGAGTTATGAAATTACAAAGTAACATATCTTTAATATGATT
CAAAATCATCACTCTCTACttccacaaaatgtgtttcaAAGCTAGAAAGG
TCATACAATATTATAGATTTACAGGAACAAATAGAacgctaaagtttcaa
aaaacgtaataacgaaCGTAGTTAAATTTCAGATATCCGTTTCCAGGATT
ACCGTAGGATCACATAAAATTCCGATTCCCGCTCTAGCATTACTGGCGCT
TTTCCGGGATCATTCCGCTAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCTCCAAAATCAAAACTTGGAGATGAGAAGAGAACTGGACGAA
CTTAAGCAGGAACTTTCTTCGAAAAGCAAAATTATTGACGATTTGAGAAC
TGAACTGGATCCAAGTTGGGAAAGGAAAGGTTGATTTGGACGACGTTAGC
ACAGTAGAGAGACAAAACAATGAACTTCAACAATACATAAGAAGGAATAA
TATCGAAATTGCGGGTATCCCTGACTCTGTGAAACAAAACAAGTTAGAAT
CGAAAGTGATCGAAATAGCTAAAGCCGTCAACATTGATATTCCTCCCAAC
GAAATCGAAGCTTGTCATCGCCTGttccaaagaaaaaatcaaaaaggtcC
AAAGCGCACAATAGTGAGATTTGTAAACAGAAAACTTGCAGAAAAGTTAA
TCAAAAAAGGCAAAGACTTCAGTAAACGTGAGGTATTTGAAAAAGCAGAT
TTGACAAATAAAATTTACATTGATAATaacctttgcagttactacagaTT
TCTCTGGGGAAGAGTTAAAGCGTTGTATGGTCGTAATGCTATTGAATCGT
TTTGGGTGTTTAATCAGGTTCTATTAACTTGAGATTTAATGATGACACAG
ATGAAGTCTTGAAAGTAACACATTTAAATGATTTAATTGAATTCTTTCCT
GATCATANTCGTAATGCTATTGAATCGTTTTGGGTGTTTAATGGTTCTAT
TAACTTGAGATTTAATGATGACACAGATGAAGTCTTGAAAGTAACACATC
TAAATGATTTAATTGAATTCTTTCCTGATCATAAAGATCTCTTTGtttct
aaataattttttcattctGTAGCGTTTCTTATTTATATCTTAGTTTTTGA
ATGCTCTGTTTTTTATTATACTTTGGCTCGAGAaacatttctcttttgca
cACTGATTTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
CTTCATAATCTCAATCATAATTTTAGCATTCTCGGTATCAGTGAAACCAG
ACTCAAATCTTCTATCGAAAACACTGAACTTTCTATCAACGGCTTTAAAT
CCTTTGATACCCCAGCCATCTCATCAGTTGGGGGAACTGCTCTCTTTATT
TCTAACTCTCTCAAAAGCAAACCTCGCACAGATCTTTCAAAGATGTGCAC
TCAGCCTGTGGTAATCTTGAGTCAACTTTTGCTGAAATCGTcttaaaaaa
taggaaaaaactATATCGTTGGTTGCAACTACAAACATCCAGACCTTGAC
GttgatctttttaataaaaattttatatcTCCTTTGCTGAAGAAAGCCTG
CCAAGAAAgcaaaaatcttattttattaGGCGATTTCAACATAGATCTTT
TGACTTGTGACTCTGTAATCTCTCACTCTAAATTTCTTGATATTCTTGGT
GCTTATCAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGTT
CGTTCAAAAATTCCTTTTACGCGTCATCATTTCTCAGAGTGGCTAAAGAA
CGAAAATCGAAATGCTAATGACTTTTTCATTGCTCCAGCTTCAAAACCAT
CATGTCATCAAAACTCTCATGTCTCTCAGTGAAAATAAGGCAACTGGTCC
AAACAGCATCCCGTATCGAATTATTTCTTCCAACTTGGACACGCTTTCTT
CTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCAGCTG
AAAGAAGCGAAAGTCATCCCtgtcttcaaaaacaaaggttCTCCATTCGA
TGCTGAGAACTATAGGCCAATTTCTCTTCTTTCTAACATTGataaaatct
tccaaaaactcATGCATTCACGACTGATGAACTTCCTCGACCAATCAAAC
TCGATCTACCCATTACAGTTTGGATTTTGATCAAACCACTCGACTGAAAC
AGCCCTTCTCTATGCTATCAACAAAATATCAAATGCTTTGAATGAAGGTA
AGTATGGATGCTCTATTTTC

Coding sequence (CDS) from alignment at sc0002367:7037..16256+

>TCONS_00040258 ID=TCONS_00040258|Name=TCONS_00040258|organism=Clytia hemisphaerica|type=CDS|length=5832bp|location=Sequence derived from alignment at sc0002367:7037..16256+ (Clytia hemisphaerica)
ATAGGTACACCAAGATCCTTGAAGAAAGTCTCAGTCAATTTGAATAACAT
GTTTGAAGATGTGGACGATGAATGCACTATAGTACCAGATCAATCAACAG
CTTATCAAACTGCTCTTGAAGATCAGTCATCGGCGATGCATTCAAGTCTC
ATCATACAAGAAGAAGCCAATAAAGGTATTGACAGTATCAAGCAAATGGA
ATCACTCAGACATCAAATTCATTCCTCTTTTTACCCAAACCACAGAGaaa
tctCTCCAGGAAATCTGTCAGATACATCGAGTGTTGATACGATAGCATTG
TTACGATCTACTATTTCACTACCATCACCGGAACTCCAGCTTGATGAAAA
TGGTATTCTGATAGCATCTATGAACAATTTGAAAAGTTTGTACCACTCAC
CATCGAGTATCCTGGATTCTTCACTTGCAGCTGAAAAcaccattttgaaa
gaaaacattgaaaaagagAGACTTAGGCGAAAGCATTGTGAAGATCAAAT
TAAGATACTTCAACAAAAGCTTCTGGATAGCCAAGAGCAACTAGCTGTAA
GTGTATCGACAGATCGGAAAAAACAAATCATGATAGAACAATTGGATAAT
acTCTGGCAAACGTGGTGGAGGGATGGAAAAAGAAGGAGAGCTTACGAGA
TACAGCGTACAAGCGCGTTTGTTCGGAGAAAGAAACATTAGAATCCACTG
TGCAGAGGCAAGAAGAGTTTGGATTTTGAATAGGTACACCAAGATCCTTG
AAGAAAGTCTCAGTCAATTTGAATAACATGTTTGAAGATGTGGACGATGA
ATGCACTATAGTACCAGATCAATCAACAGCTTATCAAACTGCTCTTGAAG
ATCAGTCATCGGCGATGCATTCAAGTCTCATCATACAAGAAGAAGCCAAT
AAAGGTATTGACAGTATCAAGCAAATGGAATCACTCAGACATCAAATTCA
TTCCTCTTTTTACCCAAACCACAGAGaaatctCTCCAGGAAATCTGTCAG
ATACATCGAGTGTTGATACGATAGCATTGTTACGATCTACTATTTCACTA
CCATCACCGGAACTCCAGCTTGATGAAAATGGTATTCTGATAGCATCTAT
GAACAATTTGAAAAGTTTGTACCACTCACCATCGAGTATCCTGGATTCTT
CACTTGCAGCTGAAAAcaccattttgaaagaaaacattgaaaaagagAGA
CTTAGGCGAAAGCATTGTGAAGATCAAATTAAGATACTTCAACAAAAGCT
TCTGGATAGCCAAGAGCAACTAGCTGTAAGTGTATCGACAGATCGGAAAA
AACAAATCATGATAGAACAATTGGATAATacTCTGGCAAACGTGGTGGAG
GGATGGAAAAAGAAGGAGAGCTTACGAGATACAGCGTACAAGCGCGTTTG
TTCGGAGAAAGAAACATTAGAATCCACTGTGCAGAGGCAAGAAGAGTTTG
GATTTTGAATAGGTACACCAAGATCCTTGAAGAAAGTCTCAGTCAATTTG
AATAACATGTTTGAAGATGTGGACGATGAATGCACTATAGTACCAGATCA
ATCAACAGCTTATCAAACTGCTCTTGAAGATCAGTCATCGGCGATGCATT
CAAGTCTCATCATACAAGAAGAAGCCAATAAAGGTATTGACAGTATCAAG
CAAATGGAATCACTCAGACATCAAATTCATTCCTCTTTTTACCCAAACCA
CAGAGaaatctCTCCAGGAAATCTGTCAGATACATCGAGTGTTGATACGA
TAGCATTGTTACGATCTACTATTTCACTACCATCACCGGAACTCCAGCTT
GATGAAAATGGTATTCTGATAGCATCTATGAACAATTTGAAAAGTTTGTA
CCACTCACCATCGAGTATCCTGGATTCTTCACTTGCAGCTGAAAAcacca
ttttgaaagaaaacattgaaaaagagAGACTTAGGCGAAAGCATTGTGAA
GATCAAATTAAGATACTTCAACAAAAGCTTCTGGATAGCCAAGAGCAACT
AGCTGTAAGTGTATCGACAGATCGGAAAAAACAAATCATGATAGAACAAT
TGGATAATacTCTGGCAAACGTGGTGGAGGGATGGAAAAAGAAGGAGAGC
TTACGAGATACAGCGTACAAGCGCGTTTGTTCGGAGAAAGAAACATTAGA
ATCCACTGTGCAGAGGCAAGAAGAGTTTGGATTTTGAATAGGTACACCAA
GATCCTTGAAGAAAGTCTCAGTCAATTTGAATAACATGTTTGAAGATGTG
GACGATGAATGCACTATAGTACCAGATCAATCAACAGCTTATCAAACTGC
TCTTGAAGATCAGTCATCGGCGATGCATTCAAGTCTCATCATACAAGAAG
AAGCCAATAAAGGTATTGACAGTATCAAGCAAATGGAATCACTCAGACAT
CAAATTCATTCCTCTTTTTACCCAAACCACAGAGaaatctCTCCAGGAAA
TCTGTCAGATACATCGAGTGTTGATACGATAGCATTGTTACGATCTACTA
TTTCACTACCATCACCGGAACTCCAGCTTGATGAAAATGGTATTCTGATA
GCATCTATGAACAATTTGAAAAGTTTGTACCACTCACCATCGAGTATCCT
GGATTCTTCACTTGCAGCTGAAAAcaccattttgaaagaaaacattgaaa
aagagAGACTTAGGCGAAAGCATTGTGAAGATCAAATTAAGATACTTCAA
CAAAAGCTTCTGGATAGCCAAGAGCAACTAGCTGTAAGTGTATCGACAGA
TCGGAAAAAACAAATCATGATAGAACAATTGGATAATacTCTGGCAAACG
TGGTGGAGGGATGGAAAAAGAAGGAGAGCTTACGAGATACAGCGTACAAG
CGCGTTTGTTCGGAGAAAGAAACATTAGAATCCACTGTGCAGAGGCAAGA
AGAGTTTGGATTTTGAATAGGTACACCAAGATCCTTGAAGAAAGTCTCAG
TCAATTTGAATAACATGTTTGAAGATGTGGACGATGAATGCACTATAGTA
CCAGATCAATCAACAGCTTATCAAACTGCTCTTGAAGATCAGTCATCGGC
GATGCATTCAAGTCTCATCATACAAGAAGAAGCCAATAAAGGTATTGACA
GTATCAAGCAAATGGAATCACTCAGACATCAAATTCATTCCTCTTTTTAC
CCAAACCACAGAGaaatctCTCCAGGAAATCTGTCAGATACATCGAGTGT
TGATACGATAGCATTGTTACGATCTACTATTTCACTACCATCACCGGAAC
TCCAGCTTGATGAAAATGGTATTCTGATAGCATCTATGAACAATTTGAAA
AGTTTGTACCACTCACCATCGAGTATCCTGGATTCTTCACTTGCAGCTGA
AAAcaccattttgaaagaaaacattgaaaaagagAGACTTAGGCGAAAGC
ATTGTGAAGATCAAATTAAGATACTTCAACAAAAGCTTCTGGATAGCCAA
GAGCAACTAGCTGTAAGTGTATCGACAGATCGGAAAAAACAAATCATGAT
AGAACAATTGGATAATacTCTGGCAAACGTGGTGGAGGGATGGAAAAAGA
AGGAGAGCTTACGAGATACAGCGTACAAGCGCGTTTGTTCGGAGAAAGAA
ACATTAGAATCCACTGTGCAGAGGCAAGAAGAGTTTGGATTTTGAATAGG
TACACCAAGATCCTTGAAGAAAGTCTCAGTCAATTTGAATAACATGTTTG
AAGATGTGGACGATGAATGCACTATAGTACCAGATCAATCAACAGCTTAT
CAAACTGCTCTTGAAGATCAGTCATCGGCGATGCATTCAAGTCTCATCAT
ACAAGAAGAAGCCAATAAAGGTATTGACAGTATCAAGCAAATGGAATCAC
TCAGACATCAAATTCATTCCTCTTTTTACCCAAACCACAGAGaaatctCT
CCAGGAAATCTGTCAGATACATCGAGTGTTGATACGATAGCATTGTTACG
ATCTACTATTTCACTACCATCACCGGAACTCCAGCTTGATGAAAATGGTA
TTCTGATAGCATCTATGAACAATTTGAAAAGTTTGTACCACTCACCATCG
AGTATCCTGGATTCTTCACTTGCAGCTGAAAAcaccattttgaaagaaaa
cattgaaaaagagAGACTTAGGCGAAAGCATTGTGAAGATCAAATTAAGA
TACTTCAACAAAAGCTTCTGGATAGCCAAGAGCAACTAGCTGTAAGTGTA
TCGACAGATCGGAAAAAACAAATCATGATAGAACAATTGGATAATacTCT
GGCAAACGTGGTGGAGGGATGGAAAAAGAAGGAGAGCTTACGAGATACAG
CGTACAAGCGCGTTTGTTCGGAGAAAGAAACATTAGAATCCACTGTGCAG
AGGCAAGAAGAGTTTGGATTTTGAATAGGTACACCAAGATCCTTGAAGAA
AGTCTCAGTCAATTTGAATAACATGTTTGAAGATGTGGACGATGAATGCA
CTATAGTACCAGATCAATCAACAGCTTATCAAACTGCTCTTGAAGATCAG
TCATCGGCGATGCATTCAAGTCTCATCATACAAGAAGAAGCCAATAAAGG
TATTGACAGTATCAAGCAAATGGAATCACTCAGACATCAAATTCATTCCT
CTTTTTACCCAAACCACAGAGaaatctCTCCAGGAAATCTGTCAGATACA
TCGAGTGTTGATACGATAGCATTGTTACGATCTACTATTTCACTACCATC
ACCGGAACTCCAGCTTGATGAAAATGGTATTCTGATAGCATCTATGAACA
ATTTGAAAAGTTTGTACCACTCACCATCGAGTATCCTGGATTCTTCACTT
GCAGCTGAAAAcaccattttgaaagaaaacattgaaaaagagAGACTTAG
GCGAAAGCATTGTGAAGATCAAATTAAGATACTTCAACAAAAGCTTCTGG
ATAGCCAAGAGCAACTAGCTGTAAGTGTATCGACAGATCGGAAAAAACAA
ATCATGATAGAACAATTGGATAATacTCTGGCAAACGTGGTGGAGGGATG
GAAAAAGAAGGAGAGCTTACGAGATACAGCGTACAAGCGCGTTTGTTCGG
AGAAAGAAACATTAGAATCCACTGTGCAGAGGCAAGAAGAGTTTGGATTT
TGAATAGGTACACCAAGATCCTTGAAGAAAGTCTCAGTCAATTTGAATAA
CATGTTTGAAGATGTGGACGATGAATGCACTATAGTACCAGATCAATCAA
CAGCTTATCAAACTGCTCTTGAAGATCAGTCATCGGCGATGCATTCAAGT
CTCATCATACAAGAAGAAGCCAATAAAGGTATTGACAGTATCAAGCAAAT
GGAATCACTCAGACATCAAATTCATTCCTCTTTTTACCCAAACCACAGAG
aaatctCTCCAGGAAATCTGTCAGATACATCGAGTGTTGATACGATAGCA
TTGTTACGATCTACTATTTCACTACCATCACCGGAACTCCAGCTTGATGA
AAATGGTATTCTGATAGCATCTATGAACAATTTGAAAAGTTTGTACCACT
CACCATCGAGTATCCTGGATTCTTCACTTGCAGCTGAAAAcaccattttg
aaagaaaacattgaaaaagagAGACTTAGGCGAAAGCATTGTGAAGATCA
AATTAAGATACTTCAACAAAAGCTTCTGGATAGCCAAGAGCAACTAGCTG
TAAGTGTATCGACAGATCGGAAAAAACAAATCATGATAGAACAATTGGAT
AATacTCTGGCAAACGTGGTGGAGGGATGGAAAAAGAAGGAGAGCTTACG
AGATACAGCGTACAAGCGCGTTTGTTCGGAGAAAGAAACATTAGAATCCA
CTGTGCAGAGGCAAGAAGAGTTTGGATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024433XLOC_024433Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040258-exon-sc0002367-1491911889:7037..7171TCONS_00040258-exon-sc0002367-1491911889:7037..7171Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1510915933:7037..7171TCONS_00040258-exon-sc0002367-1510915933:7037..7171Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1575043694:7037..7171TCONS_00040258-exon-sc0002367-1575043694:7037..7171Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1491911889:7896..8007TCONS_00040258-exon-sc0002367-1491911889:7896..8007Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1510915933:7896..8007TCONS_00040258-exon-sc0002367-1510915933:7896..8007Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1575043694:7896..8007TCONS_00040258-exon-sc0002367-1575043694:7896..8007Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1491911889:8271..8362TCONS_00040258-exon-sc0002367-1491911889:8271..8362Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1510915933:8271..8362TCONS_00040258-exon-sc0002367-1510915933:8271..8362Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1575043694:8271..8362TCONS_00040258-exon-sc0002367-1575043694:8271..8362Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1491911889:9107..9250TCONS_00040258-exon-sc0002367-1491911889:9107..9250Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1510915933:9107..9250TCONS_00040258-exon-sc0002367-1510915933:9107..9250Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1575043694:9107..9250TCONS_00040258-exon-sc0002367-1575043694:9107..9250Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1491911889:10016..10051TCONS_00040258-exon-sc0002367-1491911889:10016..10051Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1510915933:10016..10051TCONS_00040258-exon-sc0002367-1510915933:10016..10051Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1575043694:10016..10051TCONS_00040258-exon-sc0002367-1575043694:10016..10051Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1491911889:10290..10370TCONS_00040258-exon-sc0002367-1491911889:10290..10370Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1510915933:10290..10370TCONS_00040258-exon-sc0002367-1510915933:10290..10370Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1575043694:10290..10370TCONS_00040258-exon-sc0002367-1575043694:10290..10370Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1491911889:10971..11087TCONS_00040258-exon-sc0002367-1491911889:10971..11087Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1510915933:10971..11087TCONS_00040258-exon-sc0002367-1510915933:10971..11087Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1575043694:10971..11087TCONS_00040258-exon-sc0002367-1575043694:10971..11087Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1491911889:16155..16256TCONS_00040258-exon-sc0002367-1491911889:16155..16256Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1510915933:16155..16256TCONS_00040258-exon-sc0002367-1510915933:16155..16256Clytia hemisphaericaexon
TCONS_00040258-exon-sc0002367-1575043694:16155..16256TCONS_00040258-exon-sc0002367-1575043694:16155..16256Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040258-proteinTCONS_00040258-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002367supercontigsc0002367:7037..16256 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.2163	18.3704	9.79098	6.80909	15.2681	11.6428	9.53511	7.445	5.19836	7.0395	5.6037	5.85067	5.05554	4.91034	4.89518	5.81047	6.68164	8.11114	3.29134	3.79515	4.25803	4.104	11.2376	12.5219	20.4523	16.5233	2.65723	1.35874	9.93933	12.5109
Blast
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BLAST of TCONS_00040258 vs. Swiss-Prot (Human)
Match: CNTRB (Centrobin OS=Homo sapiens GN=CNTROB PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.001e-19
Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:  445 LKENIEKERLRRKHCEDQIKILQQKLLDSQEQLAVSVSTDRKKQIMIEQLDNTLANVVEGWKKKESLRDTAYKRVCSEKETLESTVQRQEEFGF*SNHSTETALLYAINKISNALN 792
            L++ ++ E  RRKHCE  I+ LQ ++L+ Q+QLAV+V+ DRKK  MIEQLD TLA VVEGW + E+ R    + +  E +  E T  +Q+E        T T L  ++++   ALN
Sbjct:  186 LRDALDSEHTRRKHCERHIQSLQTRVLELQQQLAVAVAADRKKDTMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEEHQAAELTRSKQQE--------TVTRLEQSLSEAMEALN 293
The following BLAST results are available for this feature:
BLAST of TCONS_00040258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNTRB6.001e-1942.24Centrobin OS=Homo sapiens GN=CNTROB PE=1 SV=1[more]
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