TCONS_00020062 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020062
Unique NameTCONS_00020062
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1097

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020062 ID=TCONS_00020062|Name=TCONS_00020062|organism=Clytia hemisphaerica|type=transcript|length=1097bp
ccggtttaTATCTGATTTGACTTTCGATCTCAGATTTGCCGGCAccgaaa
gttttcaaaataaactttGTGGTGTTTTGCTCTTTTGCTGGTGATCGTTT
CGCATCTTCCACTTTCTGCCACTGATGTGTTATACCTAAAGGCTTCATTT
GACATTTGAGCAATCATATGGCGAAGTTGGAAAGTCTTTAATCAAACAGA
AGATAGTTTTACACCAATAATAAAGATCAAGATGTCGCCATCGTTAAAGG
AAATCGACTCACCAGTGCAGATGAGGCTGTATGGTCTTACCAAACACaag
tttgttatggtttttaCTAGTTTCTGTATTTCATTCTTTGTTGTGCTTCT
CATTGGGATACTTGGTCCTGAGGCTATCGGAGAATCATCAATAACTGCAA
AAGAGCTTGGAGTATCTCCTAAACACTTTCTGACTGGTCCTTTCACAATA
AATTCTGGATTGGTCAATAAATTCAACCAAGAGCTGTGGTTATTCTGTAA
ATTCAAATTGAGGAAGCTTCAAGTGAAAGAAGATTATAAATTGGAAAGGG
AGTTCAGAATGACAACCCAAGTTCTGGGAACCAAAAAAGACTCCAGTCAT
CAATTAATTAACCATGTGAATCATAATCGAACAAGAACTCTGAAATGTGA
TGCCAGTaattgtGAATCGTTGGTGGTGTTTCATCTGGGGATGCTTTTGA
ACCCTTCTTATTTGGTTACTGTTCGGTTTTTCAATCTGAATCTACCTGAT
GGCGTAAAAGTTGACAATATCATTTTCACGtttAAATACTATGAGGAGCA
ATTCAcacaaattcaaatttggtttcgttttgtttttttggttcTTGCTT
TTACGGTTACGtgTTTGTTCACACACAGTTTACGACAGTATCCAGTCAGA
GATTGGTGTATTGAACAAAAGTGGATGTCCATCTTACTACCCCTTCTTCT
TCTCTATGACAGTATAATGCTTTTGTTTGTACATCTTCAGTCAGGGCATT
TCCCTTTTCTGACCAATGTTGAGCTCCATATCTGTGTCAATTtaatgtga
aaaagtttgtaaattaaaattgatgagtaagcaaaagaTATCAACTA
Run BLAST on NCBI

protein sequence of TCONS_00020062-protein

>TCONS_00020062-protein ID=TCONS_00020062-protein|Name=TCONS_00020062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MSPSLKEIDSPVQMRLYGLTKHKFVMVFTSFCISFFVVLLIGILGPEAIG
ESSITAKELGVSPKHFLTGPFTINSGLVNKFNQELWLFCKFKLRKLQVKE
DYKLEREFRMTTQVLGTKKDSSHQLINHVNHNRTRTLKCDASNCESLVVF
HLGMLLNPSYLVTVRFFNLNLPDGVKVDNIIFTFKYYEEQFTQIQIWFRF
VFLVLAFTVTCLFTHSLRQYPVRDWCIEQKWMSILLPLLLLYDSIMLLFV
HLQSGHFPFLTNVELHICVNLM
Run BLAST on NCBI

transcript from alignment at sc0000348:88467..93925-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020062 ID=TCONS_00020062|Name=TCONS_00020062|organism=Clytia hemisphaerica|type=transcript|length=5459bp|location=Sequence derived from alignment at sc0000348:88467..93925- (Clytia hemisphaerica)
CCGGTTTATATCTGATTTGACTTTCGATCTCAGATTTGCCGGCACCGAAA
GTTTTCAAAATAAACTTTGTGGTGTTTTGCTCTTTTGCTGGTGATCGTTT
CGCATCTTCCACTTTCTGCCACTGATGTGTTATACCTAAAGGCTTCATTT
GACATTTGAGCAATCATATGGCGAAGTTGGAAAGTCTTTAATCAAACAGA
AGATAGTTTTACACCAATAATAAAGATCAAGATGTCGCCATCGTTAAAGG
AAATCGACTCGTAAGGAAAATTTTGTATCGATATTGAAACTTTTTGTTTG
TGTCCAATATTTTGTTTGTTCCTATTTTGAAAATTGTCATTAAATATTGT
TGATATTTTGGATAATGGGGCTGTAAAAGGGTCAGGGGATGTGTGCAGCC
TACCTTTCTACCTTTAATGCCTCCTTTTTTGTTTATCAACAATCACGAGA
CTATCTGACACAATCTGACAAAACATGGGACGACAATTCGACCACCATTT
CACCGAACCTCCAAAGTCATTTGATTTGAGTTAATAAACAAGTCTGGTTG
ATAAACTTGGTGGAGTTATGAAAAAAAAATTGTTGTCAAAGAGATTTAAC
AGTACGTAAGTGAAAATACAGGCCAGATATCAACAGTCCCATGTTTCGAC
CAATCGTCCCAAGTTAGAGCAGTTGACGGTACCATGGAGATCGGGTAACT
TGCATCAGTGAAGGGAGACTTGCATAACCATCAAATGCCTGACCAATCAA
AGAAAGCAGCAAAATTTCAAAACAATGTAACTCTCTACCATTTTAGAATC
TTATACTTGCCGCACAAGTATTTTTGTGCGAGTTATACTCGGCAACAGAA
TTGGGGATAAATAAAATAGCGTGGTTGGAAAATAAAAAATCATGCAAGAT
CATAAATTTTAAGATGTTTCTGGATGGCTGCTGGACGTGTAATATGAGAT
CTCAAATTAATAATTCTAGTAGGCATAATTATGCATGACATCACTTTTTT
TATCGTAAGTTGGTCTAATCTTGACATTCATCTTCTAATTTCCACATCCT
TCCTTAGAGATATAGAGGAATTCCTTAGAGGAATCACTGATAGAAGAAAG
ATTTTTTCCTCTCTGAACGTACGTTAAACTAAGACAATTTGTTTCAATAA
GCAATTCTGACTTTCCTATCATTCCAATCTCCGAAGAAGGGTGTCAAAAT
TAGAAGAGGGATGTTGACATTAGACCAACTTACGGTATGATTAGGAGATA
ATATATTTATACATTTTTTATTTAGATTTGCATTTTAATGTCCAGTCAGG
TCATTCATTTGAGGGCTATGTATGTTAGCCTCCACTGATGCTCCAAACTC
AGACTTGACACGAAAAACGTCAAATGGACGTTTTATGTACGAACCCCCAC
CCCCTTTCAATTAACGTCACTGTGGCAGTAAAACTTAATCTCAAGATATT
AAACCCTTTATCAGCTTCATTGCTATAAATATTCCATGGCTGTTTCCTTT
GCGATCTTTATTTTTGCTTGCTTTAGGCAAATCCTCCACTCCTTTGAAAT
GCAAGAGCACACAATTTTCCTTTGAAAATACAGAAGACGCAGAATTTTCC
TTTAAAAATACGGAAGACACAGATTTTCCTTTGAAAATACGAAAGACAGA
CTTTTCCTTTTGAAATAAGGAAGACAGAATTTTCCCTTGTAAATGCAGAA
AGACAAAATTTTCCTTTGATGGCAGGAAGACAGAATTTTCCTTTGAAAAT
ACAGGATGCAAAATTTTCCTTTGAAATGCAGGAAGACGCAGAATTTTCCT
TCAAAAATACGGAAGACACAGAATTTTCCTTTGAAAATACGAAAGACTTT
TTCTTTGAAAATACGGAAGACAGAATTTTCCTTTGAAAATACAGGATGCA
GAATCTTTTTTTTTTTTTGAATACAAAAGACAGAGTTTTCCTTTAAAAAC
ATGAAAGACAGACTTTTCCTTTTGAAATAAGGAAGAAAGAATTTTCCCTT
GTAAATGCAGAAAGACAGAATTTTCCTTTGATGGCAGGAAGACAGAATTT
TCCTTTGAAAATACAGGATGCAAAATTTCCTTTGAAATGCAGCAAGACGC
AGAAATTTCCTTCAAAAATACGGAAGACACAGAATTTTCCTTTGAAAATA
CAGAAGACAGAAATTTCCTTTGAAAGATGCAGAATTATTATTTTTTTGAA
TACAGAAGACAGAGTTTTCCTTTGAAAATACGGAAAATAGACTTTTCCTT
TTGAAATAAGGAAGACAGAATTTTCCTTTGTAAATGCAGGAAGACAGAAT
TTTCCTTTGAAAATACAGGATACAAAATTTTCTTTTGAAATAGAGAAGAT
AGAATTTTTCTTTAGAAATATAGAAAAGACAGAGTTTTCCTTTGAAATGC
AGGAAGACCGAATTTTCCTTTGAAAATAGGAAATACAGAATTTTCCTCCT
TAAAATATGGAACACAGAATTTCCGTTTGAGAATGAAAACTAATTATTTT
CCTTTTTAAATATGATAGTAAAAAGCAAAGAATATGTCAGAAGAAAGGTG
TAAAACAAAAAAAAATAATCGCTATGATTTGACTTTTTTGTGTTTTTGTG
TCCTAAAATTACTTTCCCTATCATGTTCTTTGCATTATTTTGCTTCACTA
ACATCGAAACGCTTCTTACACTGCACACTTCTTACACTGCACACTTTATG
ATACTACAATGAGCTTCCATTGAAAGTAATATTTAACAACTCAGGCTGTA
TTTTAGAAAAGTAGGGCAGTGTCTGTTGATGGTCGAAAAGGGCACTTTTT
TAGTATTTTTCAACTGAAAAGGCTGTTTTTGCCAACATTTTAGTTATTTC
AGAAGGGGGTCGTGTCAGTAATCAGACGCTAAAAAGGCATGAAAAATTGC
CTGCGACTTTGATAACTGTCCATAGTTCTAGTCGTCTTTGCCCCTTGCTT
CAAGGGGGGCTAGAAGGTTCAAAGGCAACTGGTACCTGGAATAGCCTTAT
GCCAGGGGCTACCTACTCGGCTAGGGGTCTCCTACATTTATTCAAATTAA
AAAATTTATCAAAGATCAAAAGTTAAACGTCTAATATAGTAACTCTCAAT
GTCATAATACGAATGTTACTAACTTACCCAATGCCCCCTGGATTGGTATA
TATCTCAGAAAATGTCTTCATATATGAATATTTTTTTGGCATACCTTTTA
TCTAAAGACTAAAGTGGGTAGCCAATTATATAAATTTTTCATAAGTAGAA
AGACAAAATGATATTCCATCAGATTCATTCCTGGCAATTCGTGACAAAGA
AAGTTATTGAAAGTTTCTGTAATGAGGAGCGCCTTGTAAAGTTTTCCTAT
TAAATTGGCATATAAATAGTAATATATAACTCAAATTAAGTTAATAGGCA
CCTTTTATATGTAAATATGAGTTTTTTAAAGTGTAGCAAAATAATGACAA
AAATTTTAATCTGTGCTTATGTTTTTCAAAGTTAGAAAAGACATGAAAAT
TAAAAAAAACTGACCCCCTGTCCCTCATTTTTAAGATAACTTTTTCGTTT
AAATGATTTCAAAAATAAAATTTCAAGCTGTTTTTATCACTTGCAATTGT
TATTAAAAACTTCTCTTCTTTCACAATTTAGACCAGTGCAGATGAGGCTG
TATGGTCTTACCAAACACAAGTTTGTTATGGTTTTTACTAGTTTCTGTAT
TTCATTCTTTGTTGTGCTTCTCATTGGGATACTTGGTCCTGAGGCTATCG
GAGAATCATCAATAACTGCAAAAGAGCTTGGAGTATCTCCTAAACACTTT
CTGGTGAGTTATTTTTTCACAAAGATAAAATTAAATTTAAGAAGCTTCTT
GTTAATAAGAATTTAATAAAGAGCGCTACTTTGAGTTGACTTACTAAGTG
AAACTGTTTTCTGTACTATTTTTAGACTGGTCCTTTCACAATAAATTCTG
GATTGGTCAATAAATTCAACCAAGAGCTGTGGTTATTCTGTAAATTCAAA
TTGAGGAAGCTTCAAGTGAAAGAAGGTTCGCAAATTTACTTATTCAATTA
GAAATATTGATGACAATTAGAGCATTTGTTTCTTTTATAAGATCTTTGCA
TAGGGCATTAAAATTATGGTCTTAAAAGAGCTGCAATAAATCGACCCCGC
TCCTTCTTGTTATTCCACCCATTTTTGATGATCCCTCTTTCTGTGATTTT
CTTGGAGGATGGGCACCATCGCCCTTAACAAAGGGGTTACAAACTTTGTA
TTGTCTTGAAAATATTTATATTTGTGTATTGATCTAGATTATAAATTGGA
AAGGGAGTTCAGAATGACAACCCAAGTTCTGGGAACCAAAAAAGACTCCA
GTCATCAATTAATTAACCATGTGAATCATAATCGAACAAGAACTCTGAAA
TGTGATGCCAGTGTAAGCCAATTTGTTTGTTCAATGTTTTGTATGCACAG
AATATTTCTTTCTTCCTGGATTTAGTAAATCAAGTGTTTCATGTTGCATG
ATATATTTTTCCCAAGCCTCTTATAATCATTAACATCTAAATCATAACCT
TCCGTATTAGTATTAGCTCCAGAATAGCTTTATTTTGCCATATTAAAGGT
TCTTATTGTGTTTTGTCTGAAAATTTATTATTTTTTAGAATTGTGAATCG
TTGGTGGTGTTTCATCTGGGGATGCTTTTGAACCCTTCTTATTTGGTTAC
TGTTCGGTTTTTCAATCTGAATCTACCTGATGGCGTAAAAGTTGACAATA
TCATTTTCACGGTTTGTTTTTTCTCATCTTACCCATAATCCTTTTCCCGA
ATTTGTAGACTGTCAACCTAAATTTTATTGCTCTCTTTTTTTGTCATTAC
ACTGAAGTTTCAAGATTTCATTTTTTTTATATTTTAGTTTAAATACTATG
AGGAGCAATTCACACAAATTCAAATTTGGTTTCGTTTTGTTTTTTTGGTT
CTTGCTTTTACGGTTACGGTAAGTAAATCACTTCAAGCTAAAGAGCACTT
CAAACTTTTTGTTTCATTGCTGCTAAATAAAAATTCAGGATGGACCTATC
AATTAGCATTTTTAGAATTTTGACAAATAGATTTTGGAACATAAAATTCA
TGTCTCCATCTGTTAGTAGATAAAAAAATGTCTTATTAAGGGAAGATTAT
AGCGATAATATGTCCTATATATCTTTGTCTTTGTTTCTCTATGTCGAACA
ATATTTATTATTTCATTTTTCAGTGTTTGTTCACACACAGTTTACGACAG
TATCCAGTCAGAGATTGGTGTATTGAACAAAAGTGGATGTCCATCTTACT
ACCCCTTCTTCTTCTCTATGACAGTATAATGCTTTTGTTTGTACATCTTC
AGTCAGGGCATTTCCCTTTTCTGACCAATGTTGAGCTCCATATCTGTGTC
AATTTAATGTGAAAAAGTTTGTAAATTAAAATTGATGAGTAAGCAAAAGA
TATCAACTA

Coding sequence (CDS) from alignment at sc0000348:88467..93925-

>TCONS_00020062 ID=TCONS_00020062|Name=TCONS_00020062|organism=Clytia hemisphaerica|type=CDS|length=5733bp|location=Sequence derived from alignment at sc0000348:88467..93925- (Clytia hemisphaerica)
TGTTTGTTCACACACAGTTTACGACAGTATCCAGTCAGAGATTGGTGTAT
TGAACAAAAGTGGATGTCCATCTTACTACCCCTTCTTCTTCTCTATGACA
GTATAATGCTTTTGTTTGTACATCTTCAGTCAGGGCATTTCCCTTTTCTG
ACCAATGTTGAGCTCCATATCTGTGTCAATTTAATGTGATTTAAATACTA
TGAGGAGCAATTCACACAAATTCAAATTTGGTTTCGTTTTGTTTTTTTGG
TTCTTGCTTTTACGGTTACGAATTGTGAATCGTTGGTGGTGTTTCATCTG
GGGATGCTTTTGAACCCTTCTTATTTGGTTACTGTTCGGTTTTTCAATCT
GAATCTACCTGATGGCGTAAAAGTTGACAATATCATTTTCACGATTATAA
ATTGGAAAGGGAGTTCAGAATGACAACCCAAGTTCTGGGAACCAAAAAAG
ACTCCAGTCATCAATTAATTAACCATGTGAATCATAATCGAACAAGAACT
CTGAAATGTGATGCCAGTACTGGTCCTTTCACAATAAATTCTGGATTGGT
CAATAAATTCAACCAAGAGCTGTGGTTATTCTGTAAATTCAAATTGAGGA
AGCTTCAAGTGAAAGAAGACCAGTGCAGATGAGGCTGTATGGTCTTACCA
AACACAAGTTTGTTATGGTTTTTACTAGTTTCTGTATTTCATTCTTTGTT
GTGCTTCTCATTGGGATACTTGGTCCTGAGGCTATCGGAGAATCATCAAT
AACTGCAAAAGAGCTTGGAGTATCTCCTAAACACTTTCTGATGTCGCCAT
CGTTAAAGGAAATCGACTCTGTTTGTTCACACACAGTTTACGACAGTATC
CAGTCAGAGATTGGTGTATTGAACAAAAGTGGATGTCCATCTTACTACCC
CTTCTTCTTCTCTATGACAGTATAATGCTTTTGTTTGTACATCTTCAGTC
AGGGCATTTCCCTTTTCTGACCAATGTTGAGCTCCATATCTGTGTCAATT
TAATGTGATTTAAATACTATGAGGAGCAATTCACACAAATTCAAATTTGG
TTTCGTTTTGTTTTTTTGGTTCTTGCTTTTACGGTTACGAATTGTGAATC
GTTGGTGGTGTTTCATCTGGGGATGCTTTTGAACCCTTCTTATTTGGTTA
CTGTTCGGTTTTTCAATCTGAATCTACCTGATGGCGTAAAAGTTGACAAT
ATCATTTTCACGATTATAAATTGGAAAGGGAGTTCAGAATGACAACCCAA
GTTCTGGGAACCAAAAAAGACTCCAGTCATCAATTAATTAACCATGTGAA
TCATAATCGAACAAGAACTCTGAAATGTGATGCCAGTACTGGTCCTTTCA
CAATAAATTCTGGATTGGTCAATAAATTCAACCAAGAGCTGTGGTTATTC
TGTAAATTCAAATTGAGGAAGCTTCAAGTGAAAGAAGACCAGTGCAGATG
AGGCTGTATGGTCTTACCAAACACAAGTTTGTTATGGTTTTTACTAGTTT
CTGTATTTCATTCTTTGTTGTGCTTCTCATTGGGATACTTGGTCCTGAGG
CTATCGGAGAATCATCAATAACTGCAAAAGAGCTTGGAGTATCTCCTAAA
CACTTTCTGATGTCGCCATCGTTAAAGGAAATCGACTCTGTTTGTTCACA
CACAGTTTACGACAGTATCCAGTCAGAGATTGGTGTATTGAACAAAAGTG
GATGTCCATCTTACTACCCCTTCTTCTTCTCTATGACAGTATAATGCTTT
TGTTTGTACATCTTCAGTCAGGGCATTTCCCTTTTCTGACCAATGTTGAG
CTCCATATCTGTGTCAATTTAATGTGATTTAAATACTATGAGGAGCAATT
CACACAAATTCAAATTTGGTTTCGTTTTGTTTTTTTGGTTCTTGCTTTTA
CGGTTACGAATTGTGAATCGTTGGTGGTGTTTCATCTGGGGATGCTTTTG
AACCCTTCTTATTTGGTTACTGTTCGGTTTTTCAATCTGAATCTACCTGA
TGGCGTAAAAGTTGACAATATCATTTTCACGATTATAAATTGGAAAGGGA
GTTCAGAATGACAACCCAAGTTCTGGGAACCAAAAAAGACTCCAGTCATC
AATTAATTAACCATGTGAATCATAATCGAACAAGAACTCTGAAATGTGAT
GCCAGTACTGGTCCTTTCACAATAAATTCTGGATTGGTCAATAAATTCAA
CCAAGAGCTGTGGTTATTCTGTAAATTCAAATTGAGGAAGCTTCAAGTGA
AAGAAGACCAGTGCAGATGAGGCTGTATGGTCTTACCAAACACAAGTTTG
TTATGGTTTTTACTAGTTTCTGTATTTCATTCTTTGTTGTGCTTCTCATT
GGGATACTTGGTCCTGAGGCTATCGGAGAATCATCAATAACTGCAAAAGA
GCTTGGAGTATCTCCTAAACACTTTCTGATGTCGCCATCGTTAAAGGAAA
TCGACTCTGTTTGTTCACACACAGTTTACGACAGTATCCAGTCAGAGATT
GGTGTATTGAACAAAAGTGGATGTCCATCTTACTACCCCTTCTTCTTCTC
TATGACAGTATAATGCTTTTGTTTGTACATCTTCAGTCAGGGCATTTCCC
TTTTCTGACCAATGTTGAGCTCCATATCTGTGTCAATTTAATGTGATTTA
AATACTATGAGGAGCAATTCACACAAATTCAAATTTGGTTTCGTTTTGTT
TTTTTGGTTCTTGCTTTTACGGTTACGAATTGTGAATCGTTGGTGGTGTT
TCATCTGGGGATGCTTTTGAACCCTTCTTATTTGGTTACTGTTCGGTTTT
TCAATCTGAATCTACCTGATGGCGTAAAAGTTGACAATATCATTTTCACG
ATTATAAATTGGAAAGGGAGTTCAGAATGACAACCCAAGTTCTGGGAACC
AAAAAAGACTCCAGTCATCAATTAATTAACCATGTGAATCATAATCGAAC
AAGAACTCTGAAATGTGATGCCAGTACTGGTCCTTTCACAATAAATTCTG
GATTGGTCAATAAATTCAACCAAGAGCTGTGGTTATTCTGTAAATTCAAA
TTGAGGAAGCTTCAAGTGAAAGAAGACCAGTGCAGATGAGGCTGTATGGT
CTTACCAAACACAAGTTTGTTATGGTTTTTACTAGTTTCTGTATTTCATT
CTTTGTTGTGCTTCTCATTGGGATACTTGGTCCTGAGGCTATCGGAGAAT
CATCAATAACTGCAAAAGAGCTTGGAGTATCTCCTAAACACTTTCTGATG
TCGCCATCGTTAAAGGAAATCGACTCTGTTTGTTCACACACAGTTTACGA
CAGTATCCAGTCAGAGATTGGTGTATTGAACAAAAGTGGATGTCCATCTT
ACTACCCCTTCTTCTTCTCTATGACAGTATAATGCTTTTGTTTGTACATC
TTCAGTCAGGGCATTTCCCTTTTCTGACCAATGTTGAGCTCCATATCTGT
GTCAATTTAATGTGATTTAAATACTATGAGGAGCAATTCACACAAATTCA
AATTTGGTTTCGTTTTGTTTTTTTGGTTCTTGCTTTTACGGTTACGAATT
GTGAATCGTTGGTGGTGTTTCATCTGGGGATGCTTTTGAACCCTTCTTAT
TTGGTTACTGTTCGGTTTTTCAATCTGAATCTACCTGATGGCGTAAAAGT
TGACAATATCATTTTCACGATTATAAATTGGAAAGGGAGTTCAGAATGAC
AACCCAAGTTCTGGGAACCAAAAAAGACTCCAGTCATCAATTAATTAACC
ATGTGAATCATAATCGAACAAGAACTCTGAAATGTGATGCCAGTACTGGT
CCTTTCACAATAAATTCTGGATTGGTCAATAAATTCAACCAAGAGCTGTG
GTTATTCTGTAAATTCAAATTGAGGAAGCTTCAAGTGAAAGAAGACCAGT
GCAGATGAGGCTGTATGGTCTTACCAAACACAAGTTTGTTATGGTTTTTA
CTAGTTTCTGTATTTCATTCTTTGTTGTGCTTCTCATTGGGATACTTGGT
CCTGAGGCTATCGGAGAATCATCAATAACTGCAAAAGAGCTTGGAGTATC
TCCTAAACACTTTCTGATGTCGCCATCGTTAAAGGAAATCGACTCTGTTT
GTTCACACACAGTTTACGACAGTATCCAGTCAGAGATTGGTGTATTGAAC
AAAAGTGGATGTCCATCTTACTACCCCTTCTTCTTCTCTATGACAGTATA
ATGCTTTTGTTTGTACATCTTCAGTCAGGGCATTTCCCTTTTCTGACCAA
TGTTGAGCTCCATATCTGTGTCAATTTAATGTGATTTAAATACTATGAGG
AGCAATTCACACAAATTCAAATTTGGTTTCGTTTTGTTTTTTTGGTTCTT
GCTTTTACGGTTACGAATTGTGAATCGTTGGTGGTGTTTCATCTGGGGAT
GCTTTTGAACCCTTCTTATTTGGTTACTGTTCGGTTTTTCAATCTGAATC
TACCTGATGGCGTAAAAGTTGACAATATCATTTTCACGATTATAAATTGG
AAAGGGAGTTCAGAATGACAACCCAAGTTCTGGGAACCAAAAAAGACTCC
AGTCATCAATTAATTAACCATGTGAATCATAATCGAACAAGAACTCTGAA
ATGTGATGCCAGTACTGGTCCTTTCACAATAAATTCTGGATTGGTCAATA
AATTCAACCAAGAGCTGTGGTTATTCTGTAAATTCAAATTGAGGAAGCTT
CAAGTGAAAGAAGACCAGTGCAGATGAGGCTGTATGGTCTTACCAAACAC
AAGTTTGTTATGGTTTTTACTAGTTTCTGTATTTCATTCTTTGTTGTGCT
TCTCATTGGGATACTTGGTCCTGAGGCTATCGGAGAATCATCAATAACTG
CAAAAGAGCTTGGAGTATCTCCTAAACACTTTCTGATGTCGCCATCGTTA
AAGGAAATCGACTCTGTTTGTTCACACACAGTTTACGACAGTATCCAGTC
AGAGATTGGTGTATTGAACAAAAGTGGATGTCCATCTTACTACCCCTTCT
TCTTCTCTATGACAGTATAATGCTTTTGTTTGTACATCTTCAGTCAGGGC
ATTTCCCTTTTCTGACCAATGTTGAGCTCCATATCTGTGTCAATTTAATG
TGATTTAAATACTATGAGGAGCAATTCACACAAATTCAAATTTGGTTTCG
TTTTGTTTTTTTGGTTCTTGCTTTTACGGTTACGAATTGTGAATCGTTGG
TGGTGTTTCATCTGGGGATGCTTTTGAACCCTTCTTATTTGGTTACTGTT
CGGTTTTTCAATCTGAATCTACCTGATGGCGTAAAAGTTGACAATATCAT
TTTCACGATTATAAATTGGAAAGGGAGTTCAGAATGACAACCCAAGTTCT
GGGAACCAAAAAAGACTCCAGTCATCAATTAATTAACCATGTGAATCATA
ATCGAACAAGAACTCTGAAATGTGATGCCAGTACTGGTCCTTTCACAATA
AATTCTGGATTGGTCAATAAATTCAACCAAGAGCTGTGGTTATTCTGTAA
ATTCAAATTGAGGAAGCTTCAAGTGAAAGAAGACCAGTGCAGATGAGGCT
GTATGGTCTTACCAAACACAAGTTTGTTATGGTTTTTACTAGTTTCTGTA
TTTCATTCTTTGTTGTGCTTCTCATTGGGATACTTGGTCCTGAGGCTATC
GGAGAATCATCAATAACTGCAAAAGAGCTTGGAGTATCTCCTAAACACTT
TCTGATGTCGCCATCGTTAAAGGAAATCGACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011278XLOC_011278Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020062-proteinTCONS_00020062-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020062-exon-sc0000348-1575043694:93666..93925TCONS_00020062-exon-sc0000348-1575043694:93666..93925Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1575043694:90123..90294TCONS_00020062-exon-sc0000348-1575043694:90123..90294Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1575043694:89901..90000TCONS_00020062-exon-sc0000348-1575043694:89901..90000Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1575043694:89514..89638TCONS_00020062-exon-sc0000348-1575043694:89514..89638Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1575043694:89165..89287TCONS_00020062-exon-sc0000348-1575043694:89165..89287Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1575043694:88958..89038TCONS_00020062-exon-sc0000348-1575043694:88958..89038Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1575043694:88467..88702TCONS_00020062-exon-sc0000348-1575043694:88467..88702Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1510915933:93666..93925TCONS_00020062-exon-sc0000348-1510915933:93666..93925Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1510915933:90123..90294TCONS_00020062-exon-sc0000348-1510915933:90123..90294Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1510915933:89901..90000TCONS_00020062-exon-sc0000348-1510915933:89901..90000Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1510915933:89514..89638TCONS_00020062-exon-sc0000348-1510915933:89514..89638Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1510915933:89165..89287TCONS_00020062-exon-sc0000348-1510915933:89165..89287Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1510915933:88958..89038TCONS_00020062-exon-sc0000348-1510915933:88958..89038Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1510915933:88467..88702TCONS_00020062-exon-sc0000348-1510915933:88467..88702Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1491911889:93666..93925TCONS_00020062-exon-sc0000348-1491911889:93666..93925Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1491911889:90123..90294TCONS_00020062-exon-sc0000348-1491911889:90123..90294Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1491911889:89901..90000TCONS_00020062-exon-sc0000348-1491911889:89901..90000Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1491911889:89514..89638TCONS_00020062-exon-sc0000348-1491911889:89514..89638Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1491911889:89165..89287TCONS_00020062-exon-sc0000348-1491911889:89165..89287Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1491911889:88958..89038TCONS_00020062-exon-sc0000348-1491911889:88958..89038Clytia hemisphaericaexon
TCONS_00020062-exon-sc0000348-1491911889:88467..88702TCONS_00020062-exon-sc0000348-1491911889:88467..88702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:88467..93925 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.2095	60.4268	25.8751	22.5266	35.0746	27.8016	40.5785	46.4044	48.7837	39.8673	45.132	49.9966	28.8296	23.3724	20.4404	29.3124	19.2549	22.3179	16.0538	19.4656	24.1427	20.688	24.0037	27.2369	20.8899	20.7876	22.1322	17.3643	14.9439	16.3098
Blast
[Close]
BLAST of TCONS_00020062 vs. Swiss-Prot (Human)
Match: TM181 (Transmembrane protein 181 OS=Homo sapiens GN=TMEM181 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.380e-41
Identity = 97/221 (43.89%), Postives = 132/221 (59.73%), Query Frame = 1 
Query:  271 MRLYGLTKHKFVMVFTSFCISFFVVLLIGILGPEAIGESSITAKELGVSPKHFLTGPFTINSGLVNKFNQELWLFCKFKLRKLQVKEDYKLEREFRMTTQVLGTKKDSSHQLINHVNHNRTRTLKCDASNCESLVVFHLGMLLNPSYLVTVRFFNLNLPDGVKVDNIIFTFKYYEEQFTQIQIWFRFVFLVLAFTVTCLFTHSLRQYPVRDWCIEQKWMSI 933
            MRLY L+K  FV+VF  F I F + + +GI GP+ I ++S     L  S K     P  I S  ++ +NQ+LWL C  +L   Q KE   ++  F MT +V G  +D +   I++  HNRTRTL C A  C  ++V HLG L    Y V V F +L LP    +  + FT+K Y   F++++IWFRF F+VL F VTCLF HSLR++ +RDW IEQKWMS+
Sbjct:  144 MRLYTLSKRHFVLVFVVFFICFGLTIFVGIRGPKVI-QTSAANFSLNNSKK---LKPIQILSNPLSTYNQQLWLTCVVELD--QSKET-SIKTSFPMTVKVDGVAQDGTTMYIHNKVHNRTRTLTC-AGKCAEIIVAHLGYLNYTQYTVIVGFEHLKLP----IKGMNFTWKTYNPAFSRLEIWFRFFFVVLTFIVTCLFAHSLRKFSMRDWGIEQKWMSV 352
The following BLAST results are available for this feature:
BLAST of TCONS_00020062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1814.380e-4143.89Transmembrane protein 181 OS=Homo sapiens GN=TMEM1... [more]
back to top