TCONS_00017638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017638
Unique NameTCONS_00017638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017638 ID=TCONS_00017638|Name=TCONS_00017638|organism=Clytia hemisphaerica|type=transcript|length=1684bp
CACGTTTTCATCTTTCCAAAAGTAGTTGAATTGCCATACAGTCTTGACTC
TTTGGAACCATGGATAGATGCTGAGACAATGAATGTGCACTTTAAAGGAC
ACCATGCAAGCTATATGGCTAAGATGAATGCAGCTTTGACTGAGTGGAGA
AAATCTGAACCAGAGAATGAATTAGCAAAGAAATCATTGGTAGACATTTT
GAAAGATGTGGATAGTATACCAGAAAAATGGAGGACTGCTATTCGAAACA
ATGgtggcggGTATTTAAATCACATCTTTTATTTTGCTACAATGAGTCCA
AATCCAAAAGGAATGGAGCATACTATGCCATTAGGTATTTTAACAAATTT
CCGCAAATCTTTTCACAATTTCACCCACTTCCAATCATGGATGAGTAAAG
AAGCAATGAATTTATTTGGATCTGGGTACGTTTGGCTTTGTCGTGAACCA
AATGGTGGATTTTTTACCATTTATGCAACAAAAGATCAAGCTAGTCCAAT
CACATATGGATTACAGCCTATCTTGGTCATTGACGTATGGGAACATGCTT
ATTATTTGaaacacaaaaataaaagGAAAAACTACATCGACAATTGGTGG
AAGATTGTAGATTTTTCAAAGGTAGAAGCACTTTTGAATTGGTGGTTGAA
TTTTGAGAAGAAATCACATGATGAACTTTAGTTAGAGGACTGGTGTCAAA
GTGTTATGCCGTTTCACTATTATAATAAACTAAATGAATAGCTGCAAAGA
AGTTTTACCAATTTGTACTTTATGGTTTTTAAAGATTCATATGTTTTTCA
CATTTCATCCAaatctttaatcggattaactttcgcgatttcgcgaattt
ttgccattttcgcgaaattgaAACTCGTGAAAACGCGTGAGAtttctgac
tcgcgaaattaaatccaccacaaaacttttaaaatcgcaTTTTCGGTGAA
GAAACCAGTCCAAAGTCTCTATTTGgggcaaaaaatggctatttttcagc
tgttttcaggcctattcgcgaaattaaatccacgcgagatttttcaaaac
tctgactcgcaaaattaaatccagaagaaatttaatccgattaaagcaGT
ATAGTAGAAACGTTCTAATTGATCTTTAAAGTCGTCAACTTATAACTATT
TATTGTCTGTTCATGTCAAATACAAAGGTCTAAACAATATTCATAGACAT
GTTATAATCTTTATTTGTATGTTTTGTCTAGTTAATTTATAATGATGGTA
TAACGTGATTTTAACTTTTATGATATCAAAAAAGAATTACTATTTGTAGA
TTCAAAGAAATAGAAGTAGAGAGAAGGAAAAACAACAATCTTTTATACTA
TTCATTTTGAGCCGTAGAGGGCTTGTTATAACAGCAGGTACCATAATTCA
AAACGATTTGATTGACACGCGCTTGTCTTAAAAGTAATTGTTTAAAACAA
CAGCCGGatctctttcttctttttgaaactttttatttgtgaGTTGTTTC
GATATATatcttttaataaataattttcataattagCATAATTAAAGTTG
ATTTTAATATTATGTTAACGATCTTGAACTCTCTTTCGAATAATTAAGAA
AAAATAGAAGCCGAGAGACAAAATGTTTACAACcgaaacaagacgacttg
aagtcgaaaatttcgcctagactTTGAATtgcat
Run BLAST on NCBI

protein sequence of TCONS_00017638-protein

>TCONS_00017638-protein ID=TCONS_00017638-protein|Name=TCONS_00017638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
HVFIFPKVVELPYSLDSLEPWIDAETMNVHFKGHHASYMAKMNAALTEWR
KSEPENELAKKSLVDILKDVDSIPEKWRTAIRNNGGGYLNHIFYFATMSP
NPKGMEHTMPLGILTNFRKSFHNFTHFQSWMSKEAMNLFGSGYVWLCREP
NGGFFTIYATKDQASPITYGLQPILVIDVWEHAYYLKHKNKRKNYIDNWW
KIVDFSKVEALLNWWLNFEKKSHDEL
Run BLAST on NCBI

transcript from alignment at sc0000271:305253..315874-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017638 ID=TCONS_00017638|Name=TCONS_00017638|organism=Clytia hemisphaerica|type=transcript|length=10622bp|location=Sequence derived from alignment at sc0000271:305253..315874- (Clytia hemisphaerica)
CACGTTTTCATCTTTCCAAAAGTAGTTGGTAAGTATAAATTGTATTAAAG
GGGTTACACACGAAACGAAAGTCTCGTGCTCGCAAGCGAAAGGTTTTTCA
AACACTATCAACCAAAGCGAAAAGCACCAATCGCAAAAATTTGGAAAAGC
CACTGTATTTTTGCTTTTGGATTGCTAGATTAGCTAGTTGGCTTAGGTTA
GGGGGCTTGTGGATTGTTATAGGTAAGTACGGTACCGTAGGATGGTCAGA
TGGTTAAAAACTCTCTCATTGTGGAAGAAAATTTCCGATTGCCAGTTTAC
AACGGAAAAAGACCAAAACTTATGAACTAACCCCAAAAAACGCTACAAAA
GTAGATTTAGCTTGTTAAGGCTTAAGCATAGCTGTCAACTTCGCATCACA
AAAATGCGGGAGAGCAAAAATCAAAGTCGGAAAAATTTTCCCCGATAATC
CGATTTTTCAAAACCAGAAAATCGGGAAATCGGGGAAATTTTCTCGTAAA
ATCCGATTTTATTGGAATTTTTTTTCGGGAAATTGGGGAATTTTTCGTTC
CGATCTTTCAAAATCCAGAAATTTTGCTGCTTGGTTTTTCCAAAATCGGG
AAATTTTTGGAAATGCGGGAGATGCGGGAGAAAATCCCAAAAATGCGGGA
GATTTGGCAGAATTTTCTTCACGCGGGAGAAATCGTTGACATGCAGGAGT
CTCCCGCTCAATGCGGGAGAGTTGACAGCTATGGCTTAAGCGGGTTAGTA
AGTTGTGTGTTGTCTACTGTACTACTTACACATAACAATAATACGAACGC
TCCATTATCAAAAGTTCTGAAATCCCAAAAAAGCAACCTGAAATCAGATT
GCGGTTGTTTTTCTGCCCAAACAGTGTAGCTCTAAAGCTCTAAAAACGCA
TCTAATAACATGAAAACCAGAATATGATTCTTCAATGGGAATCAAAACTA
TAAAGTGGACTTACAAACATCAATTTGTCAGATCTAACAAAATTTATAAC
GGCACTGTCATCATTGACAATAAAACAAAAAATACTCTGTCAAGAGCCTT
GTAAACATTCCAACAACTTCCATCGAAATGATCTATCACAGCTCAGTCTA
CCATTTTTAGCGCAGTCCGAGGATTGAACCGAGAACTCTCGCAGAGCGCC
CGAGCTCCCGCGCGGCACGCACCTTGGGGATGAAAAACTTCAATCTGTCA
ATCCTTTTGTCTCAAGCGAAGAGTACGCAAAGCGATTCTAGCTTTACGAT
AGTGCCGCAGATCATCAATGGATAGTATTCAATTATCATTATCCCTTTAT
TTTCATTCCTAGAACTTTTGCAAAAAAAAGGAAAAATAGAAAAGTTGTAT
TTCCTACTGCTCAATTCACATACTGAATTTGAAAGATCTTCTATGTGGCG
TTTTTTTGCAAACTTCAAAAAACTGATTTTTGTCCCGCCTTTGCGGGATT
TTGGCTCAAGTGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAAAGTCCAAATATGCGTT
TCCCGTAATTTTTGTATGAAGAGTTAGGTCTACACTGCCAAAGGGAAGCT
CTAAAAAGGGATGAGTGAAAATATATAACAATCTGATGACAGATGCAGCC
AACGAGCCCATTTCTATGGTGGCCCATGAAGGCCAAATTATTTTTTTAAA
TTGAAATGATTATTTATTTCCTAAACTAACGAAAAAAGTCAAAACATATC
CATTTTGATTTTCATTTTCAAAGTACTGTCCATTCTGGTCCATTTCGTAG
CCCATAGACCCGTTTCAATGTTTTGATTTTTCGCGTTTGTATGCGCATGC
GCCAAAATAGTTACGGTTTTTCAGAGGCAGAAAACACGAAGCGCTCGCTG
GAAAAAGGCAGTTTTGATTTTATTATTCAAAATCTCTTCATCAGAATTTC
ATGAAATTTTAGAATAAGAATCCTATATATAGTTATTAGATAACATACTA
AAATTTCTATTCAAAATTCCTTCTAGATCCTGAGAAAATTGACATAGTGT
GCCTCCAGCTAATGTTGTTGTCTTTTTTGCCTCTGAAAGTAGGGCCGTTT
TGCGGGTCGTAACGAGCCGATGTAAACATGTGACGTCACATGAAACGGGC
CTATAGATAGGGTGCGCACTCGTCGGGATTTTTTGCATGGAACGAGGAAG
AATTTACAAAATTGCATTAGTACTTATCTTTAAATTATCCAAATCTGTTC
ATTCTTTTTGCTCCGGCCTAGGAGCCTTTAATTCTCTCTTCCGACGGTCA
AGACATTTTTTGTTTGTTTATCTAATCCGATAATCTATTCTGATTTAATA
AAAACGGATTATCTGGATTTCGATAATATTGCGAAAGTATTTAGAAAAAG
ATGGCTGCCGAAAGTGGGCTTAGCTGCAAATCTCAGTGAAAGATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCATCATTATTCATG
ATGTTTTGGACATGATTTATGAGAATTCTGATGCATACTGGTCTATAACA
ATGTGGAAAGACTTTGGAGAAATTTTGGCCTTGAATTAAATCTTGAAAAA
TATGGCTAACTTCTCTAGTTTTATGGACGCACAAAACAACCACAAAACCA
TAACACATAAAACTCTGTGAAACTTTCAAACACACATCCATTGGAATTCG
AAAGAGAATACTAAAATTACAACATTACAGTGCAAATTTGAAAACGATCT
GAGCAGTTTTTGTGGTGTTATGTCATATGTGTATGGCTGAAAATGATCCT
GTTTTGTAGGTATTCATCATTTTTTGACTGGGCGACCATTCCTTTTGATT
TTTCAAACCCGACACAGATATTTTACAAACATATCACTATAAGAATTCAA
TAAAGGATACTAAAACACAATTCCTGTGTGAATTTGAACAAGATTGGAAA
AAATTTCACAGTATTATGGCTGAAAATGATCGTTTTTTAACTTTGTATGT
TGTAATTTCATTGCGGCTGACGACCGTTCCTTTTGATTTTTCAAACCCGA
CACAGATTTTTTATACAAACATATCACTATGAGAATTCAATAAAGGATAC
TAAAACACAATTCCTGTGTAAATTTGAAAAAAATTGGAGAAATTTTCACA
GTGTTATGGCTGAAAATGATCGTTTTTGGACTTTGTCGTAATTTCATCGC
GGCTAGGCGACCGTTCCTTTAATTTTTCAAACCCGACACAGATTTTTTAC
AAACATATCACTATGAGAATTCAGTAAAGGATACTAAAACACAATTCCTG
TGTAAATTTGAACAAGATCGGAGAAATTTTCACAGTGTTATAACTGAAAA
TGATATTTTTTGGATTTTGTCGTAATTTCATTGGCTGGGGCGACCGTTCC
TTTTGAAGATTTTTCAAACCCAAAACAGGTTTTTTCCAAATATACCACTA
TTTATTACATACACACTATTGTACCATTTTATTTGGTTTATCCTACTCTC
CCCCAAGTATTATCCCAACAGAAAAAATAATGCTTAGCTAAAAGCCTGTG
GCCTCTAATTTAGGCTATTTTTCTCCACGAAATTTTATCTGGACAATCAA
ATCAAGAACTTGGAAATATTGACTTATAAATGTTTATCTCATTTAGCTCC
AATGTTGAACTTTTTAGTCGAGAATGAGTGGGCGGGGGATGGGTTGGTTC
TTTAGGCGAGAAAGTGCATGTGTAATCACTTAGAAGAGCTAAACTTCCAG
CTGGTTTATTTATTCGTTAAGATTATTTCTCATACTCGCTCTGCAATAGA
ATTATTACTTGGCTTTCTGATCTGTTCTGATTAGCAGTTTGTGGGCAACG
TTCTAACACAACTAATTCAACAAGCTCATCTTTCACATCTTTTAATCTCT
TAAGCCGGAGCTTCCAGCGCAGCTGGTTTATTTTAAATCAATCACGAATT
ATCAGGGAAACAAGTAAAAAAAACTGCATCCATTATTTTCTTTCCAAAGA
TATTGATGTTTTTCGACATCAAGGTGAAAACACGACTTAGGCGAGGGGAA
TTTGATGTTCTGTTTACCGTCACGTTGTAAAAAATATTTGATGCAGCAAA
ATTTTCATTATTCCTACCTAGTGCTTCCCATCTCCAACGAAGTTTAATTC
CACAGTGAAATCGAGCTGCTTTCACTTTCGGAATCAAAATGACCATGCGC
GTGAATTCAAACGCGTTCGAGACGCGTCTAAAACGCAAATTTTTAAAACG
CCCTTGTAGCCGCCCACTGCTTAAAAAAATGCCTGCCCCATTCGCGGACG
TGATTTGAACCATGTTTTTTACTCTAGGTGCACATTTTGTTAGCGAAGAT
GTTATTTTTGATTCACTTTGAGTGTTTTGGATAGCTTGGCACAGGAAAAG
AAGAAAATAATGAGTCTTTAAGAAACAATGAACTTTTTTGAGCTGCAGCT
CAAGAGCATGCTGGCGGTCGACGGTAAACAGAACATCAAATCCCCCTCGC
CTTAGTGCTGACCACAGCACCGGAAAATTCTCGACCCACATTGAAACAAA
TGGCTGTTGCTAATGAGCTGGTTCATCTTTTCAATCGGGTTTTTTTTAGT
AATCCCAGGGTAAGATTAGGCTACAATCTATCACAATACGCTTTATTTGA
AAATCTACAGGCCGTCTGGAATTTTGAAAAATGGAAGAAATTGCGATTTT
TTAACAAGATTGCAGATTTTTTCATTTAAACACCATACACCATCTGAAAG
CTGAGGATTTCAGCTTTATATATAGTGGTGAAATTTGTTTTTAGCTATCA
TTTCCAGCTCATTAGCAATAAGCTAAAGTTTACCAGACCAGATTTTCAGA
CCACACCGGCAAAACTCTCCACACCCTGCCACACGGAAGACTAGATTTCA
TCCGCCATTTTTGGCGCGGTTTTGATGCTTCAGAAAATTATTTCTTGCTG
GCGTGGTAAGGAGGCGATTCTTTGAAAAGGTGATTTTTTTGTGTTTTGAA
AATAGAATAACTTAACCAATTTTAATAAATGACCCCTCATTTTTTTCAGA
AAGGTAAGGACTTTCAAATAAAAATTAGTTTGGTTTCTAAAAATTGAGGG
GAAAATTTCGGTTAAGTCAAAAAAATCTACCTTGATTTCAATTTTTCAAC
CGCTTTTTAAATGTTGTGTCCTTCATGGTCCATCGCGTGGTCAATTGAGG
ACACTAAAATTTTGGCTGCCGTAAGATTATATTGTTTTGATTTTTATTTC
CAAAATGGTACCTCTACATGCATGCTCGTATTCTCATGAAAATGAAAGAA
GTCTTTGTCAGTATGTTGAGTATGTGTTGTTTTTGAACTTATGGAATCTT
TTAAATGATTCGTTTTTATAATTACTATGTAGTTGTGTACTTCATTTGTG
CACCCACAAACTATTTGATGAGCATTATTAATTTCAACACTGTAAAAAGA
ATGAATGAGGGGTGTGCTTGGTTACAACATATTTATTTTTTGCTTCAAAC
AGTTACATCAATATGTCAAAAACATTTTGTTCAACTACTTTTATAGGATG
AACCATATTCATGTGGCTTTCAGCCTTGCACTCCATCGCAGAGGCTAATC
AATTTTAATGACTTTTTTTACTAATGACCAAGCTTTCATAAGAAACTAAA
TCAGTCATCTACAGGATGTATTTGCAACAACAAGGATGAGAGTTACCTGA
ATCAAGTTCAAATTCCCCAGACAATTAATTAAAACTTGAAAACTTAAATG
AGACAAAATGACCGGTTGTGAACGTCCAGCAGCCAAAATATCAACCAACC
AAATTTTGTTATTCGATTCCCGAGACAGCGCTACAATTTTTAAGGCCTTG
TTTATATGCTAAAGTAATTAAAAAAATTTTGCATATGTAAATGGGTCAGT
GTTTGAGGTCTGGCAAAATTTTCAAGAAATAGTCTATCCGGCGGTGCGCG
GATCTATGTGGGTTCTGTCTCCCCCGTAGATCTTTTTCTTGGGAAGTTGA
TCTTCAAATTAGTTTTCAATGTTGCCTTGGCTCAAGTCTTTTCATCTATG
GCTAAAATTTTAGGCAATTTCTCATAGTTTTTGAAAATATTAATTTCATT
AAAAAGTGCCAGGTTATTTTTTCATGAATCCCTTTAGAAGTTTTGTGGCA
CATTTTTTTGCTTGCAACTTAAGTAAACGATATAGCGCTTTCGCAGCAAC
AATCTTTGATACGCATTTCGGCGGGACGCTAGTGTGACTAACTGTTGCAT
TGGAAACAGATTGATGATTCTCGGTTCTGACTTCTGTAACTAGCTACCAT
GAAGTCGGGTAACTTGCATCAGTGGAGGGAAACTTGCATAACCATCAAAT
GAATGACCAATCAAAGCTTCACAATTTCAAAACAAATGAATTACGCAGCT
CTGCTCACAGCTCTACTCTACCATTTTAGAATCTCATATATGCTGTGCGA
GTAATTTTGATAATAAAAAATCATGGGAGATCATAAATTTAAAGATGGCT
GGATTTCAGACGTTTCTCGCTGGCTTCTGGACGTGTAACCTCAAAGTTAA
ACATAATTATGCATGACATCACTTTTGATTAGGAGATATACATTTTACCA
CCTGCAAATTTTGTAAATCCGGTTTGTTTTGATTTAACTTTTTATTTTAA
TGACTAGCCAAGTCATTCATTTGAGGGCTATGGAAGTTTCCCTCCACTGA
TATGCAAGTTACCTGACTTCACGGTATTAATCCTAGAGATCCGATCTTTT
GATATTTTATTTATCATTGAAGTATGACTTTTTGAAATTTAGTAGTTCCT
AAAATTTCTTTTAAAGGTGTCCCGTAAATTTTGGGGTAATTACAGGACAC
CCTCGGGGAAAATATGGGACAGGTATGACATGTTATTGAAAAATCCAGAT
ATCATTCCAAAAGGTCGTGATATTTGAGATTTTGAATCCACTTGATGACT
TAAAATCCAAGTGCTATCATTTAAAGATTTAGAGTGTAGTTATAATTCCA
TCAAACTAGAAAATCAAGTTTGTAGTTTTCTTATGGTTTTTTTGACTTTG
TTGAAAACTGGATTTTTCCTGATTTTTTGCATGGAAGTAGGGTACCATCA
ACGGAAAAAGATGGGTGAAGCAGATTTTCTCAAAAAAACTTTTTCGCCAT
AAAAATTGAATCTTTATCCATAAGAATCACTATCTATAAGCATACATTAA
TGTTTTTAATTTTAGCCAAATTACTCAATTTATTCCAAATCCCTCCCTTT
AAAAACCACCCCAATGTGCACGGGGGACTAAACAATAATGAAAACAAATG
ACAAATTCTATTAAATTGTCACTATTTGTGTTCCGAATGATTGTTTTAAC
GGTCACGCTCAAGTAGATATCAATTATATATGTGTTAAATGCATAACCAG
GTAGGTCCAGGTATCACTTGTTTGTGGAACAAATGGTCGAGAGTGGAAAG
CCCTAGGGCTACCAAAAATGTCTTGAATCTTTTGGGGGACTTAAAACTCA
GAAGGGACCTAATTTTTGCCTGGGACCTAAACCCAGGCTGACGCTATGTC
AATGCTGCACGCAAGTATTTAAGCTAAAGTCCCACTAAAGCTGGACAAAA
ATCACGTTTTTTAGTGTTTGCAAAAATAATGCCACATATTGTATTTTATG
ATTGACAGATTAAAGTTTTTTCACGCCCAAGGGAGTTCGCTGTTCTGAAG
GAGTGGCTATTTCAACTTGAGGCCAAATTCTCTAACCATGCGAGTTGTTT
TTAAAGTTTTTACAATATTAGAACTTAGATGCAGAAGATCTTACGGAACA
TTTTAAATGTGGTTCAGCAGTTCAAAAGTTATAGTGTAAAAAAGTAGTGT
AAAAAATCACTTTTGAAAAAGTACAAAAACACATGAAAAAAGGGAATCAT
CGAAACCCCATTGAAATTAATGTTTAAGATAGATCATATTCTACAGTACT
TTTTATTTAAGATATAAGTACAAAATAAGGAAATGCTAAATCTAGGCATA
CTCTTCATCACCATAAATGTCTTTATGTTTGGGCAATCTTCAAAAGATGA
AATTTATCTTGGTGTTGACCAATTTCAAGAATATTATGATTTGCCAGAAT
TGCCATACAGTCTTGACTCTTTGGAACCATGGATAGATGCTGAGACAATG
AATGTGCACTTTAAAGGACACCATGCAAGCTATATGGCTAAGATGAATGC
AGCTTTGACTGAGTGGAGAAAATCTGTAAGTAATTTGTGTGACCTTTTAG
TTTATATATTTATTAAGTATTATGAGAAGTGAGAATTGGGATCAGAAATC
CTTATTAAATTGAGTTTCTCCTGAAAATGGTTTTTCCAGCTGACGAGCTC
CCAAGCTATTTTTCCATATTTGATTTACTTTCGAATTAAAAAAAGGAATT
CTTGTGAAGTAAAGTAACAAATGAATTGTTGATGTTGGTGAAAACTAGAT
ATACTGTTTTCATGGTTTAAATTATGAAATTCATGCAAATAGCTTCAGCT
TTCTCCCCACTTTTCTAGGAACCAGAGAATGAATTAGCAAAGAAATCATT
GGTAGACATTTTGAAAGATGTGGATAGTATACCAGAAAAATGGAGGACTG
CTATTCGAAACAATGGTGGCGGGTATTTAATTTTTTTTTCAGGCTCTCTT
CGCATTGATAAAAAATAGGAGCAATTTGGGATAAATAGCCAAAGGTTAAT
TAAAAGTTTTTCTGAAAGCTGTCTATGCAAGCTATTTTTAACTGAATGCA
GTATGGAAGAAGAATCTGAATCGAATTGGTTTCCTTTTCTCCCAAAGTTG
TTTAAATCTAATCTAAAGAATATTTTTTGGTCTTATTTTCTAGGTATTTA
AATCACATCTTTTATTTTGCTACAATGAGTCCAAATCCAAAAGGAATGGA
GCATACTATGCCATTAGGTATTTTAACAAATTTCCGCAAATCTTTTCACA
ATTTCACCCACTTCCAATCATGGATGAGTAAAGAAGCAATGAATTTATTT
GGATCTGGGTACGTTTGGCTTTGTCGTGAACCAAATGGTGGATTTTTTAC
CATTTATGCAACAAAAGATCAAGCTAGTCCAATCACATATGGATTACAGC
CTATCTTGGTCATTGACGTATGGGAACATGCTTATTATTTGAAACACAAA
AATAAAAGGTAATTCTAATTTCTGGTATTGTTGATTGTTTTAAAAATTGC
TGTCTTGAAATGGAAAAAAGAAAGTTCATTTTGATTTTTTATAAAGAAAT
CATTATAGTGGTCTTGCTTTTTTAACATTGTGTAGTCTGGTGAGGTTATT
ATGGATAAAAGTTGGGGGTGTGGATATTATTGCATGATAATGAACACGTT
ATTGGTTTTTTAGGAAAAACTACATCGACAATTGGTGGAAGATTGTAGAT
TTTTCAAAGGTAGAAGCACTTTTGAATTGGTGGTTGAATTTTGAGAAGAA
ATCACATGATGAACTTTAGTTAGAGGACTGGTGTCAAAGTGTTATGCCGT
TTCACTATTATAATAAACTAAATGAATAGCTGCAAAGAAGTTTTACCAAT
TTGTACTTTATGGTTTTTAAAGATTCATATGTTTTTCACATTTCATCCAA
ATCTTTAATCGGATTAACTTTCGCGATTTCGCGAATTTTTGCCATTTTCG
CGAAATTGAAACTCGTGAAAACGCGTGAGATTTCTGACTCGCGAAATTAA
ATCCACCACAAAACTTTTAAAATCGCATTTTCGGTGAAGAAACCAGTCCA
AAGTCTCTATTTGGGGCAAAAAATGGCTATTTTTCAGCTGTTTTCAGGCC
TATTCGCGAAATTAAATCCACGCGAGATTTTTCAAAACTCTGACTCGCAA
AATTAAATCCAGAAGAAATTTAATCCGATTAAAGCAGTATAGTAGAAACG
TTCTAATTGATCTTTAAAGTCGTCAACTTATAACTATTTATTGTCTGTTC
ATGTCAAATACAAAGGTCTAAACAATATTCATAGACATGTTATAATCTTT
ATTTGTATGTTTTGTCTAGTTAATTTATAATGATGGTATAACGTGATTTT
AACTTTTATGATATCAAAAAAGAATTACTATTTGTAGATTCAAAGAAATA
GAAGTAGAGAGAAGGAAAAACAACAATCTTTTATACTATTCATTTTGAGC
CGTAGAGGGCTTGTTATAACAGCAGGTACCATAATTCAAAACGATTTGAT
TGACACGCGCTTGTCTTAAAAGTAATTGTTTAAAACAACAGCCGGATCTC
TTTCTTCTTTTTGAAACTTTTTATTTGTGAGTTGTTTCGATATATATCTT
TTAATAAATAATTTTCATAATTAGCATAATTAAAGTTGATTTTAATATTA
TGTTAACGATCTTGAACTCTCTTTCGAATAATTAAGAAAAAATAGAAGCC
GAGAGACAAAATGTTTACAACCGAAACAAGACGACTTGAAGTCGAAAATT
TCGCCTAGACTTTGAATTGCAT

Coding sequence (CDS) from alignment at sc0000271:305253..315874-

>TCONS_00017638 ID=TCONS_00017638|Name=TCONS_00017638|organism=Clytia hemisphaerica|type=CDS|length=3405bp|location=Sequence derived from alignment at sc0000271:305253..315874- (Clytia hemisphaerica)
GAAAAACTACATCGACAATTGGTGGAAGATTGTAGATTTTTCAAAGGTAG
AAGCACTTTTGAATTGGTGGTTGAATTTTGAGAAGAAATCACATGATGAA
CTTTAGGTATTTAAATCACATCTTTTATTTTGCTACAATGAGTCCAAATC
CAAAAGGAATGGAGCATACTATGCCATTAGGTATTTTAACAAATTTCCGC
AAATCTTTTCACAATTTCACCCACTTCCAATCATGGATGAGTAAAGAAGC
AATGAATTTATTTGGATCTGGGTACGTTTGGCTTTGTCGTGAACCAAATG
GTGGATTTTTTACCATTTATGCAACAAAAGATCAAGCTAGTCCAATCACA
TATGGATTACAGCCTATCTTGGTCATTGACGTATGGGAACATGCTTATTA
TTTGAAACACAAAAATAAAAGGAACCAGAGAATGAATTAGCAAAGAAATC
ATTGGTAGACATTTTGAAAGATGTGGATAGTATACCAGAAAAATGGAGGA
CTGCTATTCGAAACAATGGTGGCGGAATTGCCATACAGTCTTGACTCTTT
GGAACCATGGATAGATGCTGAGACAATGAATGTGCACTTTAAAGGACACC
ATGCAAGCTATATGGCTAAGATGAATGCAGCTTTGACTGAGTGGAGAAAA
TCTCACGTTTTCATCTTTCCAAAAGTAGTTGGAAAAACTACATCGACAAT
TGGTGGAAGATTGTAGATTTTTCAAAGGTAGAAGCACTTTTGAATTGGTG
GTTGAATTTTGAGAAGAAATCACATGATGAACTTTAGGTATTTAAATCAC
ATCTTTTATTTTGCTACAATGAGTCCAAATCCAAAAGGAATGGAGCATAC
TATGCCATTAGGTATTTTAACAAATTTCCGCAAATCTTTTCACAATTTCA
CCCACTTCCAATCATGGATGAGTAAAGAAGCAATGAATTTATTTGGATCT
GGGTACGTTTGGCTTTGTCGTGAACCAAATGGTGGATTTTTTACCATTTA
TGCAACAAAAGATCAAGCTAGTCCAATCACATATGGATTACAGCCTATCT
TGGTCATTGACGTATGGGAACATGCTTATTATTTGAAACACAAAAATAAA
AGGAACCAGAGAATGAATTAGCAAAGAAATCATTGGTAGACATTTTGAAA
GATGTGGATAGTATACCAGAAAAATGGAGGACTGCTATTCGAAACAATGG
TGGCGGAATTGCCATACAGTCTTGACTCTTTGGAACCATGGATAGATGCT
GAGACAATGAATGTGCACTTTAAAGGACACCATGCAAGCTATATGGCTAA
GATGAATGCAGCTTTGACTGAGTGGAGAAAATCTCACGTTTTCATCTTTC
CAAAAGTAGTTGGAAAAACTACATCGACAATTGGTGGAAGATTGTAGATT
TTTCAAAGGTAGAAGCACTTTTGAATTGGTGGTTGAATTTTGAGAAGAAA
TCACATGATGAACTTTAGGTATTTAAATCACATCTTTTATTTTGCTACAA
TGAGTCCAAATCCAAAAGGAATGGAGCATACTATGCCATTAGGTATTTTA
ACAAATTTCCGCAAATCTTTTCACAATTTCACCCACTTCCAATCATGGAT
GAGTAAAGAAGCAATGAATTTATTTGGATCTGGGTACGTTTGGCTTTGTC
GTGAACCAAATGGTGGATTTTTTACCATTTATGCAACAAAAGATCAAGCT
AGTCCAATCACATATGGATTACAGCCTATCTTGGTCATTGACGTATGGGA
ACATGCTTATTATTTGAAACACAAAAATAAAAGGAACCAGAGAATGAATT
AGCAAAGAAATCATTGGTAGACATTTTGAAAGATGTGGATAGTATACCAG
AAAAATGGAGGACTGCTATTCGAAACAATGGTGGCGGAATTGCCATACAG
TCTTGACTCTTTGGAACCATGGATAGATGCTGAGACAATGAATGTGCACT
TTAAAGGACACCATGCAAGCTATATGGCTAAGATGAATGCAGCTTTGACT
GAGTGGAGAAAATCTCACGTTTTCATCTTTCCAAAAGTAGTTGGAAAAAC
TACATCGACAATTGGTGGAAGATTGTAGATTTTTCAAAGGTAGAAGCACT
TTTGAATTGGTGGTTGAATTTTGAGAAGAAATCACATGATGAACTTTAGG
TATTTAAATCACATCTTTTATTTTGCTACAATGAGTCCAAATCCAAAAGG
AATGGAGCATACTATGCCATTAGGTATTTTAACAAATTTCCGCAAATCTT
TTCACAATTTCACCCACTTCCAATCATGGATGAGTAAAGAAGCAATGAAT
TTATTTGGATCTGGGTACGTTTGGCTTTGTCGTGAACCAAATGGTGGATT
TTTTACCATTTATGCAACAAAAGATCAAGCTAGTCCAATCACATATGGAT
TACAGCCTATCTTGGTCATTGACGTATGGGAACATGCTTATTATTTGAAA
CACAAAAATAAAAGGAACCAGAGAATGAATTAGCAAAGAAATCATTGGTA
GACATTTTGAAAGATGTGGATAGTATACCAGAAAAATGGAGGACTGCTAT
TCGAAACAATGGTGGCGGAATTGCCATACAGTCTTGACTCTTTGGAACCA
TGGATAGATGCTGAGACAATGAATGTGCACTTTAAAGGACACCATGCAAG
CTATATGGCTAAGATGAATGCAGCTTTGACTGAGTGGAGAAAATCTCACG
TTTTCATCTTTCCAAAAGTAGTTGGAAAAACTACATCGACAATTGGTGGA
AGATTGTAGATTTTTCAAAGGTAGAAGCACTTTTGAATTGGTGGTTGAAT
TTTGAGAAGAAATCACATGATGAACTTTAGGTATTTAAATCACATCTTTT
ATTTTGCTACAATGAGTCCAAATCCAAAAGGAATGGAGCATACTATGCCA
TTAGGTATTTTAACAAATTTCCGCAAATCTTTTCACAATTTCACCCACTT
CCAATCATGGATGAGTAAAGAAGCAATGAATTTATTTGGATCTGGGTACG
TTTGGCTTTGTCGTGAACCAAATGGTGGATTTTTTACCATTTATGCAACA
AAAGATCAAGCTAGTCCAATCACATATGGATTACAGCCTATCTTGGTCAT
TGACGTATGGGAACATGCTTATTATTTGAAACACAAAAATAAAAGGAACC
AGAGAATGAATTAGCAAAGAAATCATTGGTAGACATTTTGAAAGATGTGG
ATAGTATACCAGAAAAATGGAGGACTGCTATTCGAAACAATGGTGGCGGA
ATTGCCATACAGTCTTGACTCTTTGGAACCATGGATAGATGCTGAGACAA
TGAATGTGCACTTTAAAGGACACCATGCAAGCTATATGGCTAAGATGAAT
GCAGCTTTGACTGAGTGGAGAAAATCTCACGTTTTCATCTTTCCAAAAGT
AGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009856XLOC_009856Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017638-proteinTCONS_00017638-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017638-exon-sc0000271-1575043694:315847..315874TCONS_00017638-exon-sc0000271-1575043694:315847..315874Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1575043694:307500..307627TCONS_00017638-exon-sc0000271-1575043694:307500..307627Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1575043694:307103..307206TCONS_00017638-exon-sc0000271-1575043694:307103..307206Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1575043694:306567..306881TCONS_00017638-exon-sc0000271-1575043694:306567..306881Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1575043694:305253..306361TCONS_00017638-exon-sc0000271-1575043694:305253..306361Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1510915933:315847..315874TCONS_00017638-exon-sc0000271-1510915933:315847..315874Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1510915933:307500..307627TCONS_00017638-exon-sc0000271-1510915933:307500..307627Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1510915933:307103..307206TCONS_00017638-exon-sc0000271-1510915933:307103..307206Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1510915933:306567..306881TCONS_00017638-exon-sc0000271-1510915933:306567..306881Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1510915933:305253..306361TCONS_00017638-exon-sc0000271-1510915933:305253..306361Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1491911889:315847..315874TCONS_00017638-exon-sc0000271-1491911889:315847..315874Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1491911889:307500..307627TCONS_00017638-exon-sc0000271-1491911889:307500..307627Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1491911889:307103..307206TCONS_00017638-exon-sc0000271-1491911889:307103..307206Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1491911889:306567..306881TCONS_00017638-exon-sc0000271-1491911889:306567..306881Clytia hemisphaericaexon
TCONS_00017638-exon-sc0000271-1491911889:305253..306361TCONS_00017638-exon-sc0000271-1491911889:305253..306361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:305253..315874 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.2228	22.4698	15.3343	14.7987	22.6894	15.2219	29.0987	26.3174	26.9991	24.0626	22.1831	24.2536	14.5258	12.1637	15.2301	15.4162	17.2378	16.8574	14.4016	15.6516	13.7472	13.8458	25.731	23.0609	10.7702	13.2643	13.9378	11.9138	20.1463	18.7031
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001189Mn/Fe_SOD
IPR019832Mn/Fe_SOD_C
IPR019831Mn/Fe_SOD_N
IPR019833Mn/Fe_SOD_BS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0004784superoxide dismutase activity
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004784 superoxide dismutase activity
Blast
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BLAST of TCONS_00017638 vs. Swiss-Prot (Human)
Match: SODM (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 5.999e-28
Identity = 68/202 (33.66%), Postives = 112/202 (55.45%), Query Frame = 1 
Query:   28 ELPYSLDSLEPWIDAETMNVHFKGHHASYMAKMNAALTEWRKSEPENELAKKSLVDILKDVDSIPEKWRTAIRNNGGGYLNHIFYFATMSPNPKGMEHTMPLG-ILTNFRKSFHNFTHFQSWMSKEAMNLFGSGYVWLCREPNGGFFTIYATKDQASPI--TYGLQPILVIDVWEHAYYLKHKNKRKNYIDNWWKIVDFSKV 624
            +LPY   +LEP I+A+ M +H   HHA+Y+  +N    +++++     LAK    D+   +   P     A++ NGGG++NH  ++  +SPN  G     P G +L   ++ F +F  F+  ++  ++ + GSG+ WL      G   I A  +Q  P+  T GL P+L IDVWEHAYYL++KN R +Y+   W ++++  V
Sbjct:   30 DLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEA-----LAKG---DVTAQIALQP-----ALKFNGGGHINHSIFWTNLSPNGGGE----PKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENV 213
The following BLAST results are available for this feature:
BLAST of TCONS_00017638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SODM5.999e-2833.66Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
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