TCONS_00017638-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017638-protein
Unique NameTCONS_00017638-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length226

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017638-protein ID=TCONS_00017638-protein|Name=TCONS_00017638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
HVFIFPKVVELPYSLDSLEPWIDAETMNVHFKGHHASYMAKMNAALTEWR
KSEPENELAKKSLVDILKDVDSIPEKWRTAIRNNGGGYLNHIFYFATMSP
NPKGMEHTMPLGILTNFRKSFHNFTHFQSWMSKEAMNLFGSGYVWLCREP
NGGFFTIYATKDQASPITYGLQPILVIDVWEHAYYLKHKNKRKNYIDNWW
KIVDFSKVEALLNWWLNFEKKSHDEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009856XLOC_009856Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017638TCONS_00017638Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001189Mn/Fe_SOD
IPR019832Mn/Fe_SOD_C
IPR019831Mn/Fe_SOD_N
IPR019833Mn/Fe_SOD_BS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0004784superoxide dismutase activity
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004784 superoxide dismutase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001189Manganese/iron superoxide dismutasePRINTSPR01703MNSODISMTASEcoord: 176..188
score: 68.6
coord: 9..20
score: 51.42
coord: 82..95
score: 44.66
coord: 138..146
score: 63.14
IPR001189Manganese/iron superoxide dismutasePIRSFPIRSF000349MnSOD_FeSODcoord: 2..221
e-value: 3.0E-55
score: 184.9
IPR019832Manganese/iron superoxide dismutase, C-terminalPFAMPF02777Sod_Fe_Ccoord: 115..210
e-value: 6.3E-30
score: 103.3
IPR019832Manganese/iron superoxide dismutase, C-terminalSUPERFAMILY54719Fe,Mn superoxide dismutase (SOD), C-terminal domaincoord: 112..214
IPR019831Manganese/iron superoxide dismutase, N-terminalPFAMPF00081Sod_Fe_Ncoord: 9..99
e-value: 3.3E-19
score: 69.1
IPR019831Manganese/iron superoxide dismutase, N-terminalSUPERFAMILY46609Fe,Mn superoxide dismutase (SOD), N-terminal domaincoord: 7..100
NoneNo IPR availableGENE3D1.10.287.990coord: 23..99
e-value: 2.5E-25
score: 88.6
IPR019833Manganese/iron superoxide dismutase, binding sitePROSITEPS00088SOD_MNcoord: 178..185

Blast
[Close]
BLAST of TCONS_00017638-protein vs. Swiss-Prot (Human)
Match: SODM (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.522e-30
Identity = 68/202 (33.66%), Postives = 112/202 (55.45%), Query Frame = 0 
Query:   10 ELPYSLDSLEPWIDAETMNVHFKGHHASYMAKMNAALTEWRKSEPENELAKKSLVDILKDVDSIPEKWRTAIRNNGGGYLNHIFYFATMSPNPKGMEHTMPLG-ILTNFRKSFHNFTHFQSWMSKEAMNLFGSGYVWLCREPNGGFFTIYATKDQASPI--TYGLQPILVIDVWEHAYYLKHKNKRKNYIDNWWKIVDFSKV 208
            +LPY   +LEP I+A+ M +H   HHA+Y+  +N    +++++     LAK    D+   +   P     A++ NGGG++NH  ++  +SPN  G     P G +L   ++ F +F  F+  ++  ++ + GSG+ WL      G   I A  +Q  P+  T GL P+L IDVWEHAYYL++KN R +Y+   W ++++  V
Sbjct:   30 DLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEA-----LAKG---DVTAQIALQP-----ALKFNGGGHINHSIFWTNLSPNGGGE----PKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENV 213
The following BLAST results are available for this feature:
BLAST of TCONS_00017638-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SODM1.522e-3033.66Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
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