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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012695 ID=TCONS_00012695|Name=TCONS_00012695|organism=Clytia hemisphaerica|type=transcript|length=1460bp
CGTGTTAGATAGATGaatgaaggaaaaaaattataGATGTTAAAAACAAC
TGTCAAAGGAGCAGCACAGAAATGGAAAAAGTTCACTCTCATCTTGTCTT
TTGATCAGTCGACAAGTCGACTTCGAAATTGGGTGTCGCAGTACTTTTAG
CCTTTGTTGGAAAGGTAAAAGTAAGTAGACCCGATTCATCACAAGAAAAT
AGTGGTTATCGCAATTTTTTTGTTGGCTTATTTCATCAGCCTTATCGGGT
GTGATCATCAAAGACTTGAGAGTGAGAGAGGCTAGCAAATATTGAGCAAT
GTATTCTCAAATGTTGAATTCTAATCAACCACCACAAGGACTGACGGGTA
ATTTTGATGCAACATCAAACCCCATGATGCAACAGCAGTCAATGGCAGCA
ACTGATGCCAATAATTTGTTCAGCACCATACCGAATGATATCTACATGAC
TGATCATCTATACTCCCTAAACTCAAATTGGCCATTACGCCCTCCTGAAC
ACAACCACCATCAACACCATCAACACCAAACACATCAAGTCATGACCcat
catcaccatcatcatcaccatcatcCACATCTCAATTCACTGGATACAGt
tcaacagcaacaacaacacgTGGTCGACGATCCAAACACATTACAAGAAT
CAGGCAATTTAGAAACACTTCTTGCGGCAGCACaacttttgaaacttcaa
gAAAGTGGCAGTAAAAATAAAGTCCCTGATAATATAACAAGCTTGGCAAG
TAATGAAGTAACAAACACTGATTTTGATAAATGGACGCAACAACAACTTC
TTAATCTACCAAGTCCAACGGAATCAGAACATTCATTAAATTCTTTAGAA
GATCCATCAAACTCGTTATACCCACCCAAATACCAATGCCAACAATGTCA
TAAAGTCTTTAAAACCAAGTACACACTTACTATACATTTGAGAATGCCTG
ACCACACTAAAAACAGGCCTTTTGTTTGTAGTGTGTGTGGCAAAGGATTT
CGCCTATCAAGTACGCTTTGCCGACACAAAATCATCCACACAGCTGAAAA
ACCACATAAGTGCGAATTCTGCGATAAGGCTTTCAATAGATCATCAACAC
TTAAAACTCACATGAAAATACACAGTAATCAGAAAGACTTTATTTGTAAA
ATCTGCAATAAAGGATTCCATCAGAAAGGTAATTTGAGGAATCACATGTT
AGTTCACACGGGTGAGAAACCACATAATTGCACCGAGTGTGGTAAGCAGT
TTAGTAAACTttccaatttgaaatttcatttaCAATCACATAGTAATAGC
AGATAATGATGGACTTTTAGATGTACCGTCGGATCCCAACTCAGCTCTGG
CAAACAACGTTGGATGAATGTTAATCAAACGTTGTATGAATATTTGATGG
ACGTTGCGATTTATATTTCACAGAAGATGGTATGTATTTCCCATATGATT
TATTGGACAT Run BLAST on NCBI protein sequence of TCONS_00012695-protein >TCONS_00012695-protein ID=TCONS_00012695-protein|Name=TCONS_00012695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MYSQMLNSNQPPQGLTGNFDATSNPMMQQQSMAATDANNLFSTIPNDIYM
TDHLYSLNSNWPLRPPEHNHHQHHQHQTHQVMTHHHHHHHHHPHLNSLDT
VQQQQQHVVDDPNTLQESGNLETLLAAAQLLKLQESGSKNKVPDNITSLA
SNEVTNTDFDKWTQQQLLNLPSPTESEHSLNSLEDPSNSLYPPKYQCQQC
HKVFKTKYTLTIHLRMPDHTKNRPFVCSVCGKGFRLSSTLCRHKIIHTAE
KPHKCEFCDKAFNRSSTLKTHMKIHSNQKDFICKICNKGFHQKGNLRNHM
LVHTGEKPHNCTECGKQFSKLSNLKFHLQSHSNSR Run BLAST on NCBI transcript from alignment at sc0000147:356411..360278+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012695 ID=TCONS_00012695|Name=TCONS_00012695|organism=Clytia hemisphaerica|type=transcript|length=3868bp|location=Sequence derived from alignment at sc0000147:356411..360278+ (Clytia hemisphaerica)
CGTGTTAGATAGATGaatgaaggaaaaaaattataGATGTTAAAAACAAC
TGTCAAAGGAGCAGCACAGAAATGGAAAAAGTTCACTCTCATCTTGTCTT
TTGATCAGTCGACAAGTCGACTTCGAAATTGGGTGTCGCAGTACTTTTAG
CCTTTGTTGGAAAGGTAAAAGTAAGTAGACCCGATTCATCACAAGAAAAT
AGTGGTTATCGCAATTTTTTTGTTGGCTTATTTCATCAGCCTTATCGGGT
GTGATCATCAAAGACTTGAGAGTGAGAGAGGCTAGCAAATATTGAGCAAT
GTATTCTCAAATGTTGAATTCTAATCAACCACCACAAGGACTGACGGGTA
ATTTTGATGCAACATCAAACCCCATGATGCAACAGCAGTCAATGGCAGCA
ACTGATGCCAATAGTaagttttaaaatcattttatgcattttttttcaaa
gaacttgatttttggctttttcattttcatattctttAGAAATGAGATCT
TTTTAGTTTAAATCGTTCGATGATTTCTGTCATCGATGGTTTTAGAATTC
CATAACTTTGATAGTTTAAGGGTTTACGTTTTTTAACACCCTGAGaccta
tttttaaattttgagccaagattttaaaactttggTCCAATGAATTACGA
TTATTTAGACGCCGTGTTTTCTTTGTcgattttttataatttcaaaattt
tgtgacCTTGACAGAAACTCGATTGCTATATGGTTTTCGTACCCCTGTGG
GAGATTTCTATAGGGAGTCTTATGCCTCGCACATACTGatattttgccta
agtaacccccTCCGGATTTTCACCGTAAATTATGGTAACATTGTATCTTT
TGGCAGCAAAGTTACCAGAGCAGTCACAATGAATTATTTTGATCTTTCCT
TTGAATCTTTCTTAAATAGGTCTTTTAACTTTAGAGATTGAAAAGTTTGT
TGTAGGGCGTGGTATATTACACTTCGGCCATATCAATAAGGATCAATAAG
CCTAAATAGATGAGCAATTCAATTTTAAACACTTAGATGCCTTTTTTCAT
AAGGGCAGCCAATTTGGCAAAAGGTTTGAAAGATTTGCAAAAAAGTCTAA
CAAAAAAAACAGTGTTGTTTAAGATAATTAAAAACTTGAATACTGTATAT
ATGGTCTAAAACTTTTTAAGGGCAAAATTTCATCAATCGTTTATTTAGGT
CAAGCTGACTGTTCCTTTTGAGATTAAAAACCCAGAACATGACAACAGTC
AGCACAAAATAACAACCCAACTCCCGAGTAACCTTAGAAACGAATAAACA
ACTCTCAGAATAGGGCACTTCATTTAACACAGTCCTAAGTTTAGAACATT
GTTTTTGTAAATCTGACAGAGAACCATGTTCGTTGAATTTAGAACATCGG
ATAAAACTATCATGAAGAACAGAGGGAGTTTATACAAACATACTCAGTAT
GAAAAAACTCCCtaaatctttttgtttaaagTTATTAGAAGAACTTTTTG
ATACATTGAGAGTTCTAATGGGAAAAAGTTAACACAGAATCAAGAAAAcc
gttttcattaaaaattgaataaatttgaATTCAGCATTTCTCAATGCGGC
TTtatgaatattttaagaaaatatgtaATGTAATCTATATTTTTCAATAA
GTGTCAatgttaagttttttttcatGTTGGACAAGAGAAAAATGATCAAT
CAGTccctgaaaattttgaaaacctcaTTCAAGAATCTCCATCGTGgagt
attttgaaaaagtttattcATCTTACCCAGTAGGGGGCTTGAAGTCAgat
gtataaaaataaaataagaaaaagattctttcgtttataaattataaatt
accTACCAGCCTTCAACATATTAGTTATAGCTTTAACCCCCTTTTTCTTA
ACCTTGAAAATTAATTATCAATattctctctattgtttcaaaatatattt
ttcaaatgacACAATAGAAGTTTTGTGAAGACAACCCCTCTCAATACCTT
Cttgtataatttcaaaaatttttgaaatgaaaaatatcaaaatattaaaa
ataaacgaaaatgatagAAGAAATCTCGCTTCTTATATCTTATAACAGAA
AGATATATCGTTTTAAGAAAGTACactcaaagaaaatgaaaatcagaaat
aattcaatgaaagaaaCACTGTTGGgtagaaaaattggaaatatattCTC
AAGGTATTCAACAAGCAATGATTTTTGGAAATGGGGTTCAACGATTAGCG
AGGAGTTAATATTTCTGTTGCACTCGTATCGTTTCAGTTTCACTTTCTCA
AACAACTCTGTCTCGATCGAAAGTTATACCCCTGTCTCTAAGATATAGGA
TACAGCAGCCCAAACAACATTGCTTTTTCTTGAGCTCTTAAGGCCGgtgt
ccactttcgcgcgaagcgCGCGAAACTTTTCACGGTATTTGAAACgtcat
tggttgattgaaaaaagaagcaattcaattggtcaaaattgacgtaacgt
ttaaaaaaagttgaacttcctttttgttcgcgcgaaacttttttatgacg
taatcttttcttcagacaaaaacggttaagaaaaagcattacaccttttt
tcataagaacaaacttttaccaaaatattaagaacaagttaagaatattt
aaatggCTTTATTTATggactttaaaacacccaatttcttaggaaactgg
taaaattgagaaaatttcaagaatatttttagtgtttagaacattcgaag
gctttcaaatttttgaatttatagCTTTGAACGTATAGCtttaaaaaatg
tcattttcattttcgttttagATTTGTTCAGCACCATACCGAATGATATC
TACATGACTGATCATCTATACTCCCTAAACTCAAATTGGCCATTACGCCC
TCCTGAACACAACCACCATCAACACCATCAACACCAAACACATCAAGTCA
TGACCcatcatcaccatcatcatcaccatcatcCACATCTCAATTCACTG
GATACAGttcaacagcaacaacaacacgTGGTCGACGATCCAAACACATT
ACAAGAATCAGGCAATTTAGAAACACTTCTTGCGGCAGCACaacttttga
aacttcaagAAAGTGGCAGTAAAAATAAAGTCCCTGATAATATAACAAGC
TTGGCAAGTAATGAAGTAACAAACACTGATTTTGATAAATGGACGCAACA
ACAACTTCTTAATCTACCAAGTCCAACGGAATCAGAACATTCATTAAATT
CTTTAGAAGATCCATCAAACTCGTTATACCCACCCAAATACCAATGCCAA
CAATGTCATAAAGTCTTTAAAACCAAGTACACACTTACTATACATTTGAG
AATGCCTGACCACACTAAAAACAGGCCTTTTGTTTGTAGTGTGTGTGGCA
AAGGATTTCGCCTATCAAGTACGCTTTGCCGACACAAAATCATCCACACA
GCTGAAAAACCACATAAGTGCGAATTCTGCGATAAGGCTTTCAATAGATC
ATCAACACTTAAAACTCACATGAAAATACACAGTAATCAGAAAGACTTTA
TTTGTAAAATCTGCAATAAAGGATTCCATCAGAAAGGTAATTTGAGGAAT
CACATGTTAGTTCACACGGGTGAGAAACCACATAATTGCACCGAGTGTGG
TAAGCAGTTTAGTAAACTttccaatttgaaatttcatttaCAATCACATA
GTAATAGCAGATAATGATGGACTTTTAGATGTACCGTCGGATCCCAACTC
AGCTCTGGCAAACAACGTTGGATGAATGTTAATCAAACGTTGTATGAATA
TTTGATGGACGTTGCGATTTATATTTCACAGAAGATGGTATGTATTTCCC
ATATGATTTATTGGACAT Coding sequence (CDS) from alignment at sc0000147:356411..360278+ >TCONS_00012695 ID=TCONS_00012695|Name=TCONS_00012695|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at sc0000147:356411..360278+ (Clytia hemisphaerica)
ATGTATTCTCAAATGTTGAATTCTAATCAACCACCACAAGGACTGACGGG
TAATTTTGATGCAACATCAAACCCCATGATGCAACAGCAGTCAATGGCAG
CAACTGATGCCAATAATTTGTTCAGCACCATACCGAATGATATCTACATG
ACTGATCATCTATACTCCCTAAACTCAAATTGGCCATTACGCCCTCCTGA
ACACAACCACCATCAACACCATCAACACCAAACACATCAAGTCATGACCc
atcatcaccatcatcatcaccatcatcCACATCTCAATTCACTGGATACA
GttcaacagcaacaacaacacgTGGTCGACGATCCAAACACATTACAAGA
ATCAGGCAATTTAGAAACACTTCTTGCGGCAGCACaacttttgaaacttc
aagAAAGTGGCAGTAAAAATAAAGTCCCTGATAATATAACAAGCTTGGCA
AGTAATGAAGTAACAAACACTGATTTTGATAAATGGACGCAACAACAACT
TCTTAATCTACCAAGTCCAACGGAATCAGAACATTCATTAAATTCTTTAG
AAGATCCATCAAACTCGTTATACCCACCCAAATACCAATGCCAACAATGT
CATAAAGTCTTTAAAACCAAGTACACACTTACTATACATTTGAGAATGCC
TGACCACACTAAAAACAGGCCTTTTGTTTGTAGTGTGTGTGGCAAAGGAT
TTCGCCTATCAAGTACGCTTTGCCGACACAAAATCATCCACACAGCTGAA
AAACCACATAAGTGCGAATTCTGCGATAAGGCTTTCAATAGATCATCAAC
ACTTAAAACTCACATGAAAATACACAGTAATCAGAAAGACTTTATTTGTA
AAATCTGCAATAAAGGATTCCATCAGAAAGGTAATTTGAGGAATCACATG
TTAGTTCACACGGGTGAGAAACCACATAATTGCACCGAGTGTGGTAAGCA
GTTTAGTAAACTttccaatttgaaatttcatttaCAATCACATAGTAATA
GCAGATAAATGTATTCTCAAATGTTGAATTCTAATCAACCACCACAAGGA
CTGACGGGTAATTTTGATGCAACATCAAACCCCATGATGCAACAGCAGTC
AATGGCAGCAACTGATGCCAATAATTTGTTCAGCACCATACCGAATGATA
TCTACATGACTGATCATCTATACTCCCTAAACTCAAATTGGCCATTACGC
CCTCCTGAACACAACCACCATCAACACCATCAACACCAAACACATCAAGT
CATGACCcatcatcaccatcatcatcaccatcatcCACATCTCAATTCAC
TGGATACAGttcaacagcaacaacaacacgTGGTCGACGATCCAAACACA
TTACAAGAATCAGGCAATTTAGAAACACTTCTTGCGGCAGCACaactttt
gaaacttcaagAAAGTGGCAGTAAAAATAAAGTCCCTGATAATATAACAA
GCTTGGCAAGTAATGAAGTAACAAACACTGATTTTGATAAATGGACGCAA
CAACAACTTCTTAATCTACCAAGTCCAACGGAATCAGAACATTCATTAAA
TTCTTTAGAAGATCCATCAAACTCGTTATACCCACCCAAATACCAATGCC
AACAATGTCATAAAGTCTTTAAAACCAAGTACACACTTACTATACATTTG
AGAATGCCTGACCACACTAAAAACAGGCCTTTTGTTTGTAGTGTGTGTGG
CAAAGGATTTCGCCTATCAAGTACGCTTTGCCGACACAAAATCATCCACA
CAGCTGAAAAACCACATAAGTGCGAATTCTGCGATAAGGCTTTCAATAGA
TCATCAACACTTAAAACTCACATGAAAATACACAGTAATCAGAAAGACTT
TATTTGTAAAATCTGCAATAAAGGATTCCATCAGAAAGGTAATTTGAGGA
ATCACATGTTAGTTCACACGGGTGAGAAACCACATAATTGCACCGAGTGT
GGTAAGCAGTTTAGTAAACTttccaatttgaaatttcatttaCAATCACA
TAGTAATAGCAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012695-exon-sc0000147-1491911889:356411..356823 | TCONS_00012695-exon-sc0000147-1491911889:356411..356823 | Clytia hemisphaerica | exon |
| TCONS_00012695-exon-sc0000147-1510915933:356411..356823 | TCONS_00012695-exon-sc0000147-1510915933:356411..356823 | Clytia hemisphaerica | exon |
| TCONS_00012695-exon-sc0000147-1575043694:356411..356823 | TCONS_00012695-exon-sc0000147-1575043694:356411..356823 | Clytia hemisphaerica | exon |
| TCONS_00012695-exon-sc0000147-1491911889:359232..360278 | TCONS_00012695-exon-sc0000147-1491911889:359232..360278 | Clytia hemisphaerica | exon |
| TCONS_00012695-exon-sc0000147-1510915933:359232..360278 | TCONS_00012695-exon-sc0000147-1510915933:359232..360278 | Clytia hemisphaerica | exon |
| TCONS_00012695-exon-sc0000147-1575043694:359232..360278 | TCONS_00012695-exon-sc0000147-1575043694:359232..360278 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000147 | supercontig | sc0000147:356411..360278 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00012695 vs. Swiss-Prot (Human)
Match: FEZF2 (Fez family zinc finger protein 2 OS=Homo sapiens GN=FEZF2 PE=2 SV=2) HSP 1 Score: 187.578 bits (475), Expect = 7.274e-53 Identity = 86/144 (59.72%), Postives = 104/144 (72.22%), Query Frame = 2
Query: 872 PPKYQCQQCHKVFKTKYTLTIHLRMPDHTKNRPFVCSVCGKGFRLSSTLCRHKIIHTAEKPHKCEFCDKAFNRSSTLKTHMKIHSNQKDFICKICNKGFHQKGNLRNHMLVHTGEKPHNCTECGKQFSKLSNLKFHLQSHSNSR 1303
P + C+ C KVF Y LT H MP HT RPFVC VCGKGFR +STLCRHKIIHT EKPHKC C KAFNRSSTL TH++IH+ K F+C+ C KGFHQKGN +NH L H+GEK + CT C K F ++ NL FH+ +H++ +
Sbjct: 274 PKNFTCEVCGKVFNAHYNLTRH--MPVHTGARPFVCKVCGKGFRQASTLCRHKIIHTQEKPHKCNQCGKAFNRSSTLNTHIRIHAGYKPFVCEFCGKGFHQKGNYKNHKLTHSGEKQYKCTICNKAFHQVYNLTFHMHTHNDKK 415
The following BLAST results are available for this feature:
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