XLOC_026715 (gene) - C. hemisphaerica

Overview
NameXLOC_026715
Unique NameXLOC_026715
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0003803:1..9079+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_026715 ID=XLOC_026715|Name=XLOC_026715|organism=Clytia hemisphaerica|type=gene|length=9079bp|location=Sequence derived from alignment at sc0003803:1..9079+ (Clytia hemisphaerica)
TAAAGCCTTTTAATTGTCaagagtgtggtaaatcttttggaCTTAGGACG
ACCTTAACTTCTCATCAAAGAACTGTTCATGAAGGTGTAAATGCCTtcaa
atgtcaagaatgtggtaaatcttttgggCAAAAGACGAACTTAACTTCTC
ATCAAAGAACTGTTCATGAATGTGTAAAGGCCTtcaaatgtcaagaatgt
ggtaaatgtttttctACAAAGAGTTCTTTGAAAAGGCATCAAAGAACAGT
CCATGATAAAGCCTTTTGAGCGTCAGAAATAAGGAAAAAGAATTGAGAGA
AAGGTTCGTTAAAGAAACACGAAAgaatttataaatttcattGATGTGAA
ATGTCATTGATGTGGTAGACTTTTTTTCACTCTTATCCACAGACACGTCG
AAAGGAAGTTCAAGAAGGGATTGAATGTTTCAATGTGTGAAAAGTGTTGC
AAATTTAATTGAAGATAAACAAGGAGCGCAGGCTAATAGCGATGGGAGCC
TTTTATTATCTTTAAGTATCAAAATTTCAACGAATGTTGTCATTGATAAC
GAGCTACTGAGCCTTCAACGGCACTTTCTTtaggaaaattgaaacaaatg
aTCATATACTTACTGCCAACCTTTCTTAGAAACACAGAAATTTATAATAA
ACCTGCCAGTTGAAGCTAATTTTGTCCTAATTAGCCTTTTTTCTataatt
tattttatattttagaatgtacattttgttttataaacaTAGGAAAAGTG
GGTGCCAGCTAGCAAATGATATTTCACAAAAGACGCTATAAAATACAAAT
AAtatatcaatcgtaaaaggggttacgcacggagaacgagtctcgtgttc
gcaaagcgaaagggattctatAGAGCCAACTATTTCCCGGGTTAGAAGAT
CAacaataactcggaaagctaaaggaagcaaaaattccgaagttaaaaaa
tgaaaaataacttccgggtctctattatttcgaatgtttttgttcgaaaa
tcttgttagattcgaattttagattcgaacaaaaacattcgaccgaagtt
cccgccaaaattatgcacataaaaataaagaaaaattttgtcgatccaga
agcttcaaaataaatgcagcagctttttcagagatgtgaaatTATTATAC
ATTACAGTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCA
TTGaattttttcgattgagaagaaattcttcattaatgcgtttctctatc
agattgataacactttcgatgtttttgtttcgatgcatagaTGAGAAAAT
GTATACTGGTTTAAGCTATGAATggtctgaaacaacatttttgcaacaaa
aactaacTGGGTTGAATTTTCGAAGTAAAAagtgttgattgttgaagaat
tgatgctgaaaagGCAAAGACACAGTTTTGTGGAGGATTGGGAGAGACAC
AAGCAGACACAAGAGACTTTTTACACAAATCCCTCGTTTTACCTGGTTTA
TGGTTTAATCAAAGACAAAGATATTGAATTTCCCTCgttttgttatggaa
aatattcttgacaagtattaaataatttcaagtttttatgcatACATTCA
TAAAAAGAACTGTTTGGTTTTCACGAAACGAACGAAAGTGCCGAAAGCTG
AATTTATTTACTTTGGGTCGTGTCACGTGTGTGTCGAGttgttttgtaat
aatttctatatatttcatcagttttaatttcactgactttttggaaagaa
tggagtaagagctcatcaaaaaatattttttttacgtttttccattattt
attccgagagttcagttcttttcggctgttttgttttgattttctcacgc
tGACCCAAATGGtaaccaatttttatttaaagtcatCCTAAGGCCTCATA
ACGCTCATAACACCCCTCTCTCATTGCATTATCGATAAATTTTCCGATCC
AAAGAGGGGTTAGCCATttccaaactcctttccaatcccatcttattttc
cccatcttattcccgatagaatgaggggtcaacgacctcccaattccttt
ccaatctcgagttatcgcatttttttgttttgatgacgtcatcagctaaa
aatggctaaaaattcagccaaattctaaagtcctactcaagccttataaa
ccctcccatctcattccccataaaattcccgatagagAATGTAATAATGT
ACGATAGGGGTCAACTCCTCTTCAAGCTCGAGATATcgtattttgaagtt
tttcaaaaacccGTGaagtcattgggtccctttacccctaatgttatcaa
cggtcaattcgcgaattttgaaatttttgcggtcaacaggtaccttgtgc
cccaagggtcccaaaaaaNTAAAAATCGTTTTGTTAACCCAGGTTGAATT
AATTGTTTCAGAGTGAATAATTTAGGAGGACCTTTTTTCATAGTGTACGA
ACAATTTTTGGATCTTTTTTCAATCGTGATATTTTCAATGCGTTTattgt
gtttttctttcatttagaatattttgtttaaaaaatgaattctgtgaaag
aagaaatgaaaaaagagattGACCAGATTGACAAAGAAGAAGTTCATGGT
TGTGATGAAACAAAACATTTGGAAATTGTTATCAAACTGGAAGATGAATC
AACTGGATATCCAGACGACGAACTTTTGGAACCATTCAAAAGCCATGAAA
atgaactatttaaaaatcattgTAGAAATGTAAAGGGGAACGATGTTACA
TCACCCGAAAAAACTGACcccaaaaattatgaaatcaCTATTAAACTTGA
AGATGAGTCAAAACCTCAAGATGATAAGAATAAAAGTCTCCAATTAATGG
ATGATTTGGAAAATCCAAATTCAGTCAATATTAACAATGGAACTAATTGT
TTTGATCAGTTTTCACCGATTAAAGAAATGATCGGGGAGGAAATTACTAT
taaatttgaagataaattgtttcaaaaccatgaaaatgaaaatgtacaGG
AATGTTTTGAGGCTGATAAGATAGAAAATCCGAACAAAGACGAAATAACG
AAAAGTTCGTTTAAAGAACATCAAAGAACGATATATGATAAACCTtttaa
atgtcaagaatgtggtaaatcttttgctACAAAGAGAAATTTGGTGAGGC
ACCATAAAACAATCCATCAAGGTATAAAGCCTTtcaaatgtcaagaatgt
gATAAATGTTTTGTAGATAAAACCAACTTAACTTCTCATCAAATAGCTGT
CCATCAACTAGGTATAAAGGCTTTTAACTGTCAGAAATGTGCAAAGTCAT
TTACAATGAAAAGTTATTTGAAGGCGCATCAAAGAACAGTCCATCCAggt
atgaaaacatttttttgtcaagaatgtggtaagtCTTTTGGACATAAATC
GACCCTAACTTCGCATCAAAGAACAGTCCATGAAGGTATTAAGCCATTTG
ATTGTAAAGAATGTGGTAACTGTTTTGGACAGAAAACGAACTTAACTTCG
CATCAAAGAACAGTTCATGAAGGTATAAAGGCTTttgaatgtcaagaatg
tggtaagtGTTTTGTAGAGAAAAGAAACTTAACTTCGCATCAAAGAACAG
TTCATGAAGGTATAAAGCCCTTTAAATGTCaagagtgtggtaaatctttt
ggaCAGAAAGTGAACTTAACTTCGCATCAAGGAATAGTCCATGAAGGTAT
AAAGCCAtttaaatgtcaagaatgtggtaaatcttttggaCATAAATCGA
CCCTAACTTTGCATCAAAGAACTGTCCATGAAGGTATAAAGCCCtttaaa
tgtcaagaatgtggtaagtGTTTTGGACAAAAAACGAACTTAACTTCGCA
TCAAAGAACTGTCCATCAAGGTATAAAGGCCTATAAATGTCATcaatgtg
gtaaatcttttgctAAAAAGACTTGTTTGAAGCAGCATCAATTAACAGTT
CATAAAACGAGATAAAGGCTTTTGTGTGtcaggaatgtggtaaatgtttt
gcaGAGAAAAGAAATTTCACTTCGCATCAAAGAACTATCCATCAAggttg
aaaaaacttttaatgtcaagaatgtggtaaatgtttttctACAAAGACTT
ATTTGAAAAGACCCCAAAGAACAGTCCATGATAAAGCCTTTTGAGTGTCA
ACTATAGAAATTCTTTTGGTGAGAAAGGTTCGCTAtagaaacatcaaaga
aaagtaCATGATAAAACTCAACCTTTTCAGTGTCATGGACGTGGTCAATC
TGtgtatttcgatttttttacaAACGCATCAAAAGGATGTTCACGAGAGA
ATGAAAGTTTTTGCGTGTGAAAGTGTTGCAAATATTTTACAgggaaaact
aatttgaagacgCACCAAAGAACAAGCGAATAGGCGAgaagaatatatat
ttttggatcCTAAAAACGAAAGTCTCATCGGATTTTCTCATAGATTAAAA
AGCTCCCTACTGTGTCTTCAACAGAGCTTTCTTCTTACATGCTGGAACAG
ATGATAATGCGCTGTAAaccttttataaaaatattcaaatttgtattaaa
TTACCAAATCTACAAAGCTAACTCTTCTCCTGAATTATccaatttttggc
caattttttcttAATCAAAGGTGTGTTTTAGTTATGATGAAGTCATAGTG
ATGTCAACGTAAGCAAGTTACAATTTTGTCTCACTTTAGGGTGAAAGTTT
TTGGatcgaaaagttttttcaaaattttatattgttGAATGGGTccctat
ttttagaaaattattgTACGTACAACCCATTCCTTAATGAGTAATGAAGA
TGacaaatgaagaaaaagaaatatatcttcttgtagaaaagtgctatgat
cttcatttttgtaaTGGAGATGCTTCAATATTACAATGTCATAAATGCTA
AAAACAATTAAGAAtattcattcagtcaaaaactacagtttaaaacttta
ttatttccgaatttttgtaatatttttgtttttattttattatcatcatt
tttatttctattccactcatttttatcttttcaacaagcactaaactaaa
attaattcgaatcaaaagttacagcctctTTTGGCttcgctgcagattat
attgagacagactttagtttggTTATGGTTTTACTTATCTGTGTGTGATT
ATTTCTTTTCACCTTTTTGCTAGTCCTTGTGTATTACAAGATCGAATAAA
GTATTCTGAAGTAAAGAATTAAGGGctgtcattttttttcaattcttcaa
caattttACTTAACACttcttttgacattttcaagcataataataatttc
aattctgttactgtatctttctttcatttagagtattttgtttaaaaaat
gaatgaGATTGaaggaataaaaataaaaattgaagaggAAGAAATTCATG
GTGGTGATGAAACGAATCATGAAGATTTGGAAATTGTTATCAAACTGGAA
AATGAATCAATTAGATATGAAGACGACGAAAATTTAGAACCATTCGAAAA
CCATGAAAgtgaactatttaaaaattcttgtagaaatgtAAAGGGGAACG
ATGTTACATCATCCGAAGAAACAAACcccaaaaattatgaaatcaCCATT
AAACTTGAAGATGAGTCAAAACCTCAAGATGATAAGAATCAAAGTGCAAA
ATCAATAGAAAATTTGGGAAATCGAAATTCAGAAAATATTAATGCTGGTA
CGAATTATTTTGATCAGTTCTCCGTAAATGAAGAAATTAATTCAAAGATC
GGGGAAGGAATCACTATTAAGTTTGAAGATGGATTGGATAGCTTTCACAA
CCAtgaaaatgcaaatctacagGAATGTTTTGAGGCTATCAAGACTGACA
ATTCTAATAATGACGATTTGACAGGTGCAGATGGTTTTGATTACGATCAA
AGTATTAGACCTTTCAAGTGTAATGAATGTGGTGAACAATTTTACCAAGA
AAGCACTCTAACTCGACACAAAAGGATCCATAAAGAATGTAAGTATAGAT
GCAAACAATGTGATAAATGTTATAATAGTAAAAATAATCTTATTCaacat
caaaaagattttcatgaAGGTTTGAGACCCTTCAGGTGTGACGAGTGCCA
TAAAGCCTTTTGTCGCAAAAATCACTTAACAATCCATAAAAGAACAGTTC
ATGAAGGTATAAAGGCATttgaatgtcaagaatgtggtaaatcatTTGGA
CATAAATCAGACCTAACTTTGCATCAAAGAACAGTCCATGAAGGTATAAA
AGCTTTTgagtgtcaagaatgtggtaaatcttttggaCATAAATATGATT
TGAAGAGGCATCATAGAATTGTCCATGAAGGTATAAAGGCATTTGAGTGT
caggaatgtggtaaatcttttggaCAGAAATCGGCTCTAACCTCGCATAA
AAGAACTGTTCATGAAGGCATAAAGCCTCTTAATTGTCAAGAGTGTGGTA
AATCTCTTGGACTTAGGACGACCTTAACTTCTCATCAAAGAACTGTTCAT
GAAGGTGTAAAGGccttcaaatgtcaaaaatgtggtaaatcttttggaCA
AAAGACGAACTTAACTTCTCATCAAAGAACTGTTCATGAATGTGTAAAGG
CCTtcaaatgtcaagaatgtggtaaatgtttttctACAAAGAGTTGTTTG
AAAAGGCATCAAAGAACAGTCCATGATAAAGCCTTTTGAGCGTCAGAAAT
ATGGAAAAAGAATTGAGAGAAAGGTTCGTTAAAGAAACataaaagaataa
ataaatgaataaatttcATTGATGtgatagattttttttcacttttatcC
ACAGACACGTCGTAAGGAAGTTCAAGAAGGGATTGAATGTTTCATTGTGT
GAAAAGTGCTGCAAATTTAATTGAAGATAAACAAGGAGCGCGGGCTATTA
GCGATGTGAGCGTTTTATTATCTTTAAATATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTGAGACTGACAAGATCGAAAATCCAAACATTGAC
GAAATAACGAAAAGTTCGGTTAAAGAACATCAAAGAACGATATATGATAA
ACCTTTTAAATGTCAACAATGTAGTAAATCTCTTGCTACAAAGAGAAATT
AGTTGAGACACCAAAGAACATCCCATCAAGGTATAAAAGCCTTtcaatgt
caagaatgtggtaaatgtttcgcagagaaaaagaaattaacTTCTCATCA
AAGAACTGTTCATCAAGgtataaagctttttaaatgtCGAGAATGTGGTA
AATTTTTTGGACGCAAGACGACCTTAACTTTGCATCAAAGAACTGTTCAT
GAAGGTATTAAGCCTTTTCAATGTCAAGgatgtggtaaatcttttggaCG
CAAGACGACCTTAACTTCTCATCAAAGAACTGTtcatgaaggtttaaagc
cttttcaatgtcaagaatgtggtaaatcttttggaCGCAAGACGACCTTA
ACTTTTCATCAAAGAATTCTTCATGAAGGTGTAACTGTAAAGGCCTtcaa
atgtcaagaatgtggtaaatgtttttctACAAAGAGTAATTTGAAAATGC
ATCAAAGAACAGTCCATGATACAGCCGTTTGAGTGTCAGAAATGTGGAAA
GAATTAATGTTTGTTAAAGAAACATGAAAgaatttataaatttcattggt
ttgaaaaaagtcattgatgtggtatatatttttttaacttttatccACAG
ACACGTCAAAAGGAAGTTCAAGAAGGATTGAATGTTTCAATGTGTGAAAA
GTGTTGCAAACCTTTTGCAGACTAACCAAAGAACAGCCGACAAGGCGATG
AGAAGAATTTTGGATATTAAAAACGAAAATCTTATTGAATCTCAATATCA
TTGATAAAGAGCTACCTACGGTGCCTTCAACAGAGCTTTCTTCTTACAAG
CTGGAACAGATGATAATGCGCTGCAaacctttcttaaaaatattcaaatt
tgtaataAATTACCAAATCTACAAAGCTAACTTTTCTCCTAAATTGTGCA
ACTTTTCTAAATCATAGGTGTATTTTGATTATGAAGACAGTCATAGTCAT
GTCAACCTAAGCAAATTACAATTTGTAACATCTaaggttgaaagttttta
tttcgaaaattttttgcgaattttatATTGTTATTTAAATGGGTTATTAT
TTTTAGACAGTTAATTATTGTACGTACAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00042950TCONS_00042950Clytia hemisphaericatranscript
TCONS_00042951TCONS_00042951Clytia hemisphaericatranscript
TCONS_00042952TCONS_00042952Clytia hemisphaericatranscript
TCONS_00042953TCONS_00042953Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00042953-proteinTCONS_00042953-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003803supercontigsc0003803:1..9079 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.34	25.95	14.33	11.23	10.36	7.47	9.6	10.87	5.18	3.8	5.7	4.83	4.28	4.59	3.47	4.2	3.74	4.26	1.82	1.69	3.65	3.29	27.71	25.89	4.02	6.61	4.73	3.84	14.47	16.66